mRNA_H-elongata_contig145800.3132.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145800.3132.1
Unique NamemRNA_H-elongata_contig145800.3132.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig145800.3132.1 vs. uniprot
Match: D8LP29_ECTSI (Glycosyltransferase, family GT49 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP29_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 1.880e-89
Identity = 122/133 (91.73%), Postives = 128/133 (96.24%), Query Frame = 1
Query:    1 YAEDVPETITELKPCLESNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKSSILPAFDERFSGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTVWEKTGGGKQ 399
            YA DVPETI +LKPCLE+NTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRT+EHILCFKSHRFEPYLVVRK+++LP FDERF GYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKT WEKTGGGKQ
Sbjct:   91 YANDVPETIADLKPCLETNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTMEHILCFKSHRFEPYLVVRKTALLPKFDERFLGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTSWEKTGGGKQ 223          
BLAST of mRNA_H-elongata_contig145800.3132.1 vs. uniprot
Match: A0A7S2UWU4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWU4_9STRA)

HSP 1 Score: 132 bits (332), Expect = 2.480e-34
Identity = 63/132 (47.73%), Postives = 82/132 (62.12%), Query Frame = 1
Query:    4 AEDVPETITELKPCLESNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKSSILPAFDERFSGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTVWEKTGGGKQ 399
            +  VP+ +T LK C     C  FD  N  G G+     W        Q  L  I CF+S+R+EPY+V++KS  LP FDERF GYGKNKIQ + HLRYSG+ FYV+P +F+IH+PHPKS A+  W+ T   +Q
Sbjct:  260 SRQVPDDLTTLKNCFAMKRCNIFDHQNPRGHGSTGYKEWNYQ----EQTELREIPCFRSNRYEPYVVLKKSGGLPLFDERFVGYGKNKIQHVVHLRYSGYRFYVVPGSFIIHSPHPKSYARRKWQYTDKRQQ 387          
BLAST of mRNA_H-elongata_contig145800.3132.1 vs. uniprot
Match: A0A7S4D647_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D647_HETAK)

HSP 1 Score: 129 bits (325), Expect = 6.130e-33
Identity = 60/130 (46.15%), Postives = 83/130 (63.85%), Query Frame = 1
Query:    7 EDVPETITELKPCLESNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKSSILPAFDERFSGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTVWEKTGGGK 396
            ++VP T  EL  CL +  C  FD  N +G  T     W+       + +L  I CFKS+R+EPY ++RK  +LP +DERF GYGKNKIQ + HLRY+G++F V+  +FV+HAPHPKS ++  WEK+   K
Sbjct:  313 KEVPATSLELSKCLGTRKCWIFDYHNPAGHSTTDYNKWQKQ----EESSLREISCFKSNRYEPYFILRKHPVLPLYDERFVGYGKNKIQHVLHLRYAGYTFRVLGKHFVVHAPHPKSNSRRAWEKSNHRK 438          
BLAST of mRNA_H-elongata_contig145800.3132.1 vs. uniprot
Match: A0A7S3K145_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K145_9STRA)

HSP 1 Score: 130 bits (328), Expect = 8.490e-33
Identity = 63/126 (50.00%), Postives = 84/126 (66.67%), Query Frame = 1
Query:    4 AEDVPETITELKPCLESNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKSSILPAFDERFSGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTVWEK 381
            AE +P +   LK C+    C  FD  NQ G GT     W   LRQ + + L HI CF S+R+EPY+V+ KS +LPAF+E+F+GYGKNKIQ + HLRY+GF F V+P +F++H PH KS A+  WE+
Sbjct:  318 AERMPTSFQRLKQCIIQKECHIFDRYNQDGHGTTDYRAW---LRQDSSQ-LRHIQCFLSNRYEPYVVLHKSPLLPAFEEKFTGYGKNKIQNLVHLRYAGFHFSVLPKSFLVHFPHHKSAARMAWEQ 439          
BLAST of mRNA_H-elongata_contig145800.3132.1 vs. uniprot
Match: A0A7S0Q5D9_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q5D9_9EUKA)

HSP 1 Score: 117 bits (292), Expect = 1.750e-30
Identity = 59/128 (46.09%), Postives = 78/128 (60.94%), Query Frame = 1
Query:    4 AEDVPETITELKPCL---ESNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKSSILPAFDERFSGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTVWE 378
            A+ +PE+  +L+ C    +   C  F +   +   T Y  +WR+  R         I CF S R+EPYLV+  S+  P+FDERF GYGKNKIQWI HLR +GFSFYV+P  FVIH PHP+S ++  WE
Sbjct:   31 AKALPESFQQLRECFRVAKPAKCRVFKSNTDTHYTTNYDKWWRAPERY-------RIQCFHSLRYEPYLVLPNSNSTPSFDERFLGYGKNKIQWIQHLRLTGFSFYVLPQAFVIHCPHPESASRQNWE 151          
BLAST of mRNA_H-elongata_contig145800.3132.1 vs. uniprot
Match: A0A7S4A3V8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3V8_9STRA)

HSP 1 Score: 119 bits (297), Expect = 5.680e-29
Identity = 55/127 (43.31%), Postives = 81/127 (63.78%), Query Frame = 1
Query:    4 AEDVPETITELKPCLESNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKSSILPAFDERFSGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTVWEKT 384
            A+ +P++   LK C+ +  C  FD  N  G GT     W         ++L+ + CF S+R+EPY+V+RKS +LP ++ERF+GYGKNKI+ I HLRY+G+ F V+  +F+ H PH KS A+  WE+T
Sbjct:  301 ADQIPDSFETLKKCIMAKDCHIFDRYNHDGHGTTDYRSWLHGF--DGGKSLKPVSCFGSNRYEPYVVLRKSPLLPMYEERFTGYGKNKIEQIVHLRYAGWRFQVLGRSFLTHFPHHKSAARVEWEET 425          
BLAST of mRNA_H-elongata_contig145800.3132.1 vs. uniprot
Match: A0A7S0J5T3_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J5T3_9EUKA)

HSP 1 Score: 116 bits (291), Expect = 3.390e-28
Identity = 58/127 (45.67%), Postives = 76/127 (59.84%), Query Frame = 1
Query:    4 AEDVPETITELKPCLESNT---CGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKSSILPAFDERFSGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTVW 375
            A+++PET  +L+ C        C  F ++  +   T+Y  +WR+  R         I CF S R+EPYLV+   +  P FDERF GYGKNKIQWI HLR SGFSF+V+P  FVIH PHP S ++  W
Sbjct:  296 AKELPETFGQLRECFRVGKPPRCRIFKSSTDTHLSTSYDRWWRASERY-------RISCFHSLRYEPYLVLPSRNSTPMFDERFLGYGKNKIQWIQHLRLSGFSFHVLPQAFVIHCPHPTSASRQNW 415          
BLAST of mRNA_H-elongata_contig145800.3132.1 vs. uniprot
Match: A0A835YRB2_9STRA (Glycosyl-transferase for dystroglycan-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRB2_9STRA)

HSP 1 Score: 112 bits (280), Expect = 6.180e-27
Identity = 55/126 (43.65%), Postives = 71/126 (56.35%), Query Frame = 1
Query:    4 AEDVPETITELKPCLESNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKSSILPAFDERFSGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTVWEK 381
            AE     I++L  CL ++ C  F     +  G+     W        Q  L  I CF+S R+EPYL+V K    P FDERF+GYGKNKI W +HLRY GF F V+P  F++H PHP S AK  W++
Sbjct:  188 AEAALNDISDLAGCLLAHQCSIFYPRVPASHGSTNYTAWT------RQSALRRIPCFQSSRYEPYLIVPKGPGTPRFDERFTGYGKNKIAWTSHLRYLGFRFLVLPGAFLVHCPHPPSAAKQAWQQ 307          
BLAST of mRNA_H-elongata_contig145800.3132.1 vs. uniprot
Match: A0A7S1U758_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U758_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.580e-26
Identity = 54/126 (42.86%), Postives = 72/126 (57.14%), Query Frame = 1
Query:    1 YAEDVPETITELKPCLESNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKSSILPAFDERFSGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTVWE 378
            Y + +P     L+          FD        T Y  +++         TL ++ C  S+R+EPYL+VRK+  LP FDERF+GYGKNKIQWI HLRY G++F V+P  +V H PHPKS A+  WE
Sbjct:  240 YEQKIPSDKDSLRTMFIDREIHIFDEPYHGHSSTNYKLWFKQ-----RPMTLRYVQCLDSNRYEPYLIVRKTQYLPLFDERFTGYGKNKIQWILHLRYLGWAFTVLPDVYVTHLPHPKSKARKHWE 360          
BLAST of mRNA_H-elongata_contig145800.3132.1 vs. uniprot
Match: A0A7S0KZK0_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0KZK0_9EUKA)

HSP 1 Score: 105 bits (261), Expect = 1.290e-25
Identity = 49/124 (39.52%), Postives = 74/124 (59.68%), Query Frame = 1
Query:   13 VPETITELKPCLESNTCGRFDAAN--QSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKSSILPAFDERFSGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTVWE 378
            VP T+++++ C+ S  C  F A +  ++   T Y  +W    +      L  I CFK+ R+EPY+V+      P + E F+GYGKNKI+ + HLR++GF F+ +P  FV+H PHPKS  K +WE
Sbjct:   51 VPRTLSQMRDCIASGQCAAFYAHSSPETHGSTPYERWWS---QAAGSEPLS-IPCFKNQRYEPYVVLPNLPSTPIYSEAFTGYGKNKIELVTHLRFAGFKFFALPAAFVVHMPHPKSDQKRLWE 170          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145800.3132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LP29_ECTSI1.880e-8991.73Glycosyltransferase, family GT49 n=1 Tax=Ectocarpu... [more]
A0A7S2UWU4_9STRA2.480e-3447.73Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4D647_HETAK6.130e-3346.15Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3K145_9STRA8.490e-3350.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S0Q5D9_9EUKA1.750e-3046.09Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S4A3V8_9STRA5.680e-2943.31Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0J5T3_9EUKA3.390e-2845.67Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A835YRB2_9STRA6.180e-2743.65Glycosyl-transferase for dystroglycan-domain-conta... [more]
A0A7S1U758_9STRA1.580e-2642.86Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S0KZK0_9EUKA1.290e-2539.52Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145800contigH-elongata_contig145800:371..1476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score269.6
Seed ortholog evalue7.6e-70
Seed eggNOG ortholog2880.D8LP29
KEGG koko:K09668
KEGG Pathwayko00515,ko01100,map00515,map01100
EggNOG free text desc.protein O-linked glycosylation
EggNOG OGsKOG3765@1,KOG3765@2759
COG Functional cat.A
CAZyGT49,GT8
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons3
Model size399
Cds size399
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145800.3132.1prot_H-elongata_contig145800.3132.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145800 371..1476 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929867.6773698-CDS-H-elongata_contig145800:370..5551622929867.6773698-CDS-H-elongata_contig145800:370..555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145800 371..555 +
1691679188.2777739-CDS-H-elongata_contig145800:370..5551691679188.2777739-CDS-H-elongata_contig145800:370..555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145800 371..555 +
1622929867.7270534-CDS-H-elongata_contig145800:808..8981622929867.7270534-CDS-H-elongata_contig145800:808..898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145800 809..898 +
1691679188.2873542-CDS-H-elongata_contig145800:808..8981691679188.2873542-CDS-H-elongata_contig145800:808..898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145800 809..898 +
1622929867.741021-CDS-H-elongata_contig145800:1352..14761622929867.741021-CDS-H-elongata_contig145800:1352..1476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145800 1353..1476 +
1691679188.2999136-CDS-H-elongata_contig145800:1352..14761691679188.2999136-CDS-H-elongata_contig145800:1352..1476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145800 1353..1476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145800.3132.1

>prot_H-elongata_contig145800.3132.1 ID=prot_H-elongata_contig145800.3132.1|Name=mRNA_H-elongata_contig145800.3132.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
YAEDVPETITELKPCLESNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQR
TLEHILCFKSHRFEPYLVVRKSSILPAFDERFSGYGKNKIQWINHLRYSG
FSFYVMPVNFVIHAPHPKSVAKTVWEKTGGGKQ
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mRNA from alignment at H-elongata_contig145800:371..1476+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145800.3132.1 ID=mRNA_H-elongata_contig145800.3132.1|Name=mRNA_H-elongata_contig145800.3132.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1106bp|location=Sequence derived from alignment at H-elongata_contig145800:371..1476+ (Himanthalia elongata Himel1 dioecious)
TACGCGGAAGATGTACCGGAGACAATAACGGAGCTCAAGCCGTGCTTGGA GAGCAACACCTGCGGAAGGTTTGATGCCGCCAATCAGTCGGGGCAGGGGA CGGCCTACGTGTACTATTGGCGGAGCATGCTGCGGCAGCCGAATCAGCGC ACACTGGAACACATCCTGTGCTTCAAGTCCCACAGGTGATGACTTGTTCC CGCGTGTGGCATCGCCCTTGCGCCCCCACCCCAAACGTTTTAATCGTTGG AGGGAGGGTCTTAAGCGTTGGGTGAGAAAGGGGCGAGAAAAGAGAGGACG GGAAAATATATAGGCAGCTTCAGCGAACGTTAAACGTAAAGGAGGCCGAG GCACGCGGGTATGCCACCATCTCGCTTGAAACTGCGCGTTGGGTTGCGTC GCTCGCTCGATGTTCTTGTCTCGCGCGCCGCCGGGCAGGTTTGAGCCTTA CCTGGTCGTGCGAAAATCTTCGATCCTGCCGGCCTTTGACGAGAGATTCT CGGGCTACGGCAAAAATAAGATTCAGTGGTGAGAGAACAAGAGGGTGGGA AAATGGACTAGACATTTTCCCCGCCCCGCACTTTGCATTGTTGGTTTCTG TCTGGGGAATCGCTGTTTTTGTGTATGATCGTCCTCGATACCGTGTGGCG CCATGGACGAGTAGCATGGGGGGCGTGCGCTGCGTGCTCGCGAACTGATG TAAGAGTGCTGTGTCAAGGGGATCGCGTGGGTGTTAAATACGCCCACGCC CCGATCTTCGCGTAGGGTGAGAATCCAGGATACACCTATCGCAGGAGGCG TGCACAACGGCAAAAACTGTGCCGATTTGCTTCGCCAGACTCTTCGTGAG GCATTAATAGTAGAGGCATGTATTTCAAGCCTCGCCTGTGTGTCACGTAC ATGCCTCGGCCCCGAGTTGTCCGCGCTCATGGCGACCTCTCGATTTTCCT TTTCTCTCTCCCTACCGGGGATGAGCTCTCAGGATCAACCACCTTCGTTA CAGCGGGTTTTCCTTTTACGTGATGCCAGTGAACTTCGTGATCCACGCGC CTCACCCGAAGTCCGTGGCCAAGACGGTATGGGAAAAGACAGGCGGCGGA AAGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig145800:371..1476+

>mRNA_H-elongata_contig145800.3132.1 ID=mRNA_H-elongata_contig145800.3132.1|Name=mRNA_H-elongata_contig145800.3132.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig145800:371..1476+ (Himanthalia elongata Himel1 dioecious)
TACGCGGAAGATGTACCGGAGACAATAACGGAGCTCAAGCCGTGCTTGGA
GAGCAACACCTGCGGAAGGTTTGATGCCGCCAATCAGTCGGGGCAGGGGA
CGGCCTACGTGTACTATTGGCGGAGCATGCTGCGGCAGCCGAATCAGCGC
ACACTGGAACACATCCTGTGCTTCAAGTCCCACAGTACGCGGAAGATGTA
CCGGAGACAATAACGGAGCTCAAGCCGTGCTTGGAGAGCAACACCTGCGG
AAGGTTTGATGCCGCCAATCAGTCGGGGCAGGGGACGGCCTACGTGTACT
ATTGGCGGAGCATGCTGCGGCAGCCGAATCAGCGCACACTGGAACACATC
CTGTGCTTCAAGTCCCACAGGTTTGAGCCTTACCTGGTCGTGCGAAAATC
TTCGATCCTGCCGGCCTTTGACGAGAGATTCTCGGGCTACGGCAAAAATA
AGATTCAGTGGTTTGAGCCTTACCTGGTCGTGCGAAAATCTTCGATCCTG
CCGGCCTTTGACGAGAGATTCTCGGGCTACGGCAAAAATAAGATTCAGTG
GATCAACCACCTTCGTTACAGCGGGTTTTCCTTTTACGTGATGCCAGTGA
ACTTCGTGATCCACGCGCCTCACCCGAAGTCCGTGGCCAAGACGGTATGG
GAAAAGACAGGCGGCGGAAAGCAGGATCAACCACCTTCGTTACAGCGGGT
TTTCCTTTTACGTGATGCCAGTGAACTTCGTGATCCACGCGCCTCACCCG
AAGTCCGTGGCCAAGACGGTATGGGAAAAGACAGGCGGCGGAAAGCAG
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