mRNA_H-elongata_contig14577.3130.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14577.3130.1
Unique NamemRNA_H-elongata_contig14577.3130.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14577.3130.1 vs. uniprot
Match: D7G9H7_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9H7_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.830e-14
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   16 HSDNSCSVCLDEYGEGDELLQLTCSHVFHQPCIDRWIGEKR 138
            +SDNSCSVCLD+Y EGDELLQ+TC HVFH+ CID W+   R
Sbjct:  188 YSDNSCSVCLDDYEEGDELLQVTCGHVFHRACIDHWLKAHR 228
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BLAST of mRNA_H-elongata_contig14577.3130.1 vs. uniprot
Match: A0A6H5JXK0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK0_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.490e-14
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   16 HSDNSCSVCLDEYGEGDELLQLTCSHVFHQPCIDRWIGEKR 138
            +SDNSCSVCLD+Y EGDELLQ+TC HVFH+ CID W+   R
Sbjct:  268 YSDNSCSVCLDDYEEGDELLQVTCGHVFHRACIDHWLMAHR 308
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BLAST of mRNA_H-elongata_contig14577.3130.1 vs. uniprot
Match: A0A7S0UQL3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0UQL3_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 2.920e-10
Identity = 20/34 (58.82%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:   25 NSCSVCLDEYGEGDELLQLTCSHVFHQPCIDRWI 126
            N+CSVCLD +  GDE+++LTC H FH+PC+ RW+
Sbjct:  352 NTCSVCLDTFSSGDEVIELTCGHCFHEPCVSRWL 385
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BLAST of mRNA_H-elongata_contig14577.3130.1 vs. uniprot
Match: A0A3Q7JB13_SOLLC (RING-type domain-containing protein n=4 Tax=Solanum subgen. Lycopersicon TaxID=49274 RepID=A0A3Q7JB13_SOLLC)

HSP 1 Score: 62.4 bits (150), Expect = 3.850e-10
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    7 VVSHSDNSCSVCLDEYGEGDELLQLTCSHVFHQPCIDRWI 126
             VS  D+ CS+CL  Y +GDEL +L C H+FH PCID+W+
Sbjct:  312 AVSIDDSECSICLSTYDDGDELRELPCGHLFHCPCIDKWL 351
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BLAST of mRNA_H-elongata_contig14577.3130.1 vs. uniprot
Match: A0A7S0GSC4_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GSC4_MICPS)

HSP 1 Score: 62.4 bits (150), Expect = 3.870e-10
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    7 VVSHSDNSCSVCLDEYGEGDELLQLTCSHVFHQPCIDRWIGEKR 138
             ++ ++  C+VCLDEY EGDE+ +L C H FH+ CID W+  KR
Sbjct:  288 TLNGTNEVCTVCLDEYEEGDEIRELECEHAFHKTCIDEWLTTKR 331
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BLAST of mRNA_H-elongata_contig14577.3130.1 vs. uniprot
Match: A0A8J4RJC8_9ROSI (RING-type domain-containing protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4RJC8_9ROSI)

HSP 1 Score: 60.5 bits (145), Expect = 4.670e-10
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    4 KVVSHSDNSCSVCLDEYGEGDELLQLTCSHVFHQPCIDRWIGEK 135
            K  +  +  C+VCL E GEG+E+ QL C H+FH+ C+DRW+G K
Sbjct:   85 KPGTREEVECAVCLCEIGEGEEIRQLRCDHLFHRVCLDRWLGYK 128
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BLAST of mRNA_H-elongata_contig14577.3130.1 vs. uniprot
Match: M0ZYP4_SOLTU (Cleavage and polyadenylation specificity factor n=2 Tax=Solanum TaxID=4107 RepID=M0ZYP4_SOLTU)

HSP 1 Score: 62.0 bits (149), Expect = 5.160e-10
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   10 VSHSDNSCSVCLDEYGEGDELLQLTCSHVFHQPCIDRWI 126
            VS  D+ CS+CL  Y +GDEL +L C H+FH PCID+W+
Sbjct:  295 VSVDDSECSICLSTYDDGDELRELPCGHLFHCPCIDKWL 333
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BLAST of mRNA_H-elongata_contig14577.3130.1 vs. uniprot
Match: UPI0020088C57 (uncharacterized protein n=2 Tax=Purpureocillium takamizusanense TaxID=2060973 RepID=UPI0020088C57)

HSP 1 Score: 60.8 bits (146), Expect = 6.450e-10
Identity = 20/37 (54.05%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   25 NSCSVCLDEYGEGDELLQLTCSHVFHQPCIDRWIGEK 135
            +SCS+C +++ EGDEL +LTC H+FH PCID W+ ++
Sbjct:  149 SSCSICTEDFVEGDELRRLTCGHLFHMPCIDPWLQDR 185
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BLAST of mRNA_H-elongata_contig14577.3130.1 vs. uniprot
Match: A0A7N2MSJ7_QUELO (RING-type domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2MSJ7_QUELO)

HSP 1 Score: 60.8 bits (146), Expect = 7.310e-10
Identity = 22/45 (48.89%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    4 KVVSHSDNSCSVCLDEYGEGDELLQLTCSHVFHQPCIDRWIGEKR 138
            K  +  +  C+VC+ E  EG+E+ QLTC H+FH+ C+DRW+G KR
Sbjct:   67 KPGTREEVECAVCMCEIEEGEEIRQLTCDHLFHRVCLDRWLGYKR 111
[Close]
BLAST of mRNA_H-elongata_contig14577.3130.1 vs. uniprot
Match: A0A2P6RWL0_ROSCH (Putative transcription factor C2H2 family n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6RWL0_ROSCH)

HSP 1 Score: 61.6 bits (148), Expect = 7.420e-10
Identity = 21/41 (51.22%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    4 KVVSHSDNSCSVCLDEYGEGDELLQLTCSHVFHQPCIDRWI 126
            + +S  D  CS+CL  Y + DE+ +LTCSHVFH  C+DRW+
Sbjct:  356 RAISEEDAVCSICLANYSDNDEVRELTCSHVFHVECVDRWL 396
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14577.3130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9H7_ECTSI1.830e-1470.73RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JXK0_9PHAE2.490e-1470.73RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S0UQL3_9CHLO2.920e-1058.82Hypothetical protein (Fragment) n=1 Tax=Polytomell... [more]
A0A3Q7JB13_SOLLC3.850e-1055.00RING-type domain-containing protein n=4 Tax=Solanu... [more]
A0A7S0GSC4_MICPS3.870e-1050.00Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A8J4RJC8_9ROSI4.670e-1050.00RING-type domain-containing protein n=1 Tax=Castan... [more]
M0ZYP4_SOLTU5.160e-1056.41Cleavage and polyadenylation specificity factor n=... [more]
UPI0020088C576.450e-1054.05uncharacterized protein n=2 Tax=Purpureocillium ta... [more]
A0A7N2MSJ7_QUELO7.310e-1048.89RING-type domain-containing protein n=1 Tax=Quercu... [more]
A0A2P6RWL0_ROSCH7.420e-1051.22Putative transcription factor C2H2 family n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14577contigH-elongata_contig14577:247..387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue1.7e-11
Seed eggNOG ortholog2880.D7G9H7
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-28_000960.1
Exons1
Model size141
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929867.5586-CDS-H-elongata_contig14577:246..3871622929867.5586-CDS-H-elongata_contig14577:246..387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14577 247..387 +
1691679188.2410975-CDS-H-elongata_contig14577:246..3871691679188.2410975-CDS-H-elongata_contig14577:246..387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14577 247..387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14577.3130.1prot_H-elongata_contig14577.3130.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14577 247..387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14577.3130.1

>prot_H-elongata_contig14577.3130.1 ID=prot_H-elongata_contig14577.3130.1|Name=mRNA_H-elongata_contig14577.3130.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
LKVVSHSDNSCSVCLDEYGEGDELLQLTCSHVFHQPCIDRWIGEKR*
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mRNA from alignment at H-elongata_contig14577:247..387+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14577.3130.1 ID=mRNA_H-elongata_contig14577.3130.1|Name=mRNA_H-elongata_contig14577.3130.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig14577:247..387+ (Himanthalia elongata Himel1 dioecious)
CTGAAAGTTGTAAGCCACTCGGACAACTCGTGCTCCGTTTGCCTCGATGA
GTACGGGGAGGGGGACGAGCTGCTCCAACTCACATGCAGCCATGTCTTTC
ACCAACCATGCATTGACCGGTGGATCGGCGAGAAAAGATAA
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Coding sequence (CDS) from alignment at H-elongata_contig14577:247..387+

>mRNA_H-elongata_contig14577.3130.1 ID=mRNA_H-elongata_contig14577.3130.1|Name=mRNA_H-elongata_contig14577.3130.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig14577:247..387+ (Himanthalia elongata Himel1 dioecious)
CTGAAAGTTGTAAGCCACTCGGACAACTCGTGCTCCGTTTGCCTCGATGA
GTACGGGGAGGGGGACGAGCTGCTCCAACTCACATGCAGCCATGTCTTTC
ACCAACCATGCATTGACCGGTGGATCGGCGAGAAAAGATAACTGAAAGTT
GTAAGCCACTCGGACAACTCGTGCTCCGTTTGCCTCGATGAGTACGGGGA
GGGGGACGAGCTGCTCCAACTCACATGCAGCCATGTCTTTCACCAACCAT
GCATTGACCGGTGGATCGGCGAGAAAAGATAA
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