mRNA_H-elongata_contig145626.3119.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145626.3119.1
Unique NamemRNA_H-elongata_contig145626.3119.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig145626.3119.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE)

HSP 1 Score: 85.5 bits (210), Expect = 7.350e-19
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 2 
Query:   41 TWTLREEHYAKLRTVHHRVLLRIIGTQRK-RTDHRITLYYRALEITR*ESIETTLRTRILLWAGTLIRMSGGRLAAK 268
            TWTL  +H+AKLR+ HH VLLR+IG QR+ RTDH    Y +AL ITR ESIETT+R R L +AG ++R   GRL ++
Sbjct:   16 TWTLNADHFAKLRSAHHEVLLRVIGFQRRLRTDHTTLSYAKALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSR 92
[Close]
BLAST of mRNA_H-elongata_contig145626.3119.1 vs. uniprot
Match: A0A6H5JS19_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS19_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.100e-11
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 2 
Query:   41 TWTLREEHYAKLRTVHHRVLLRIIGTQRKRTDHRITLYYRALEITR*ESIETTLRTRILLWAGTLIRMSGGRL 259
            TW  R++ Y  LRT+HHR+LLR+IG QR++  +R   Y + L+    +S+ETT+R R LL+AG L R   GRL
Sbjct:  330 TWAPRQDQYRTLRTIHHRLLLRVIGYQREKGTYRQLSYAQTLKRVGCQSVETTIRQRRLLFAGALARQPDGRL 402
[Close]
BLAST of mRNA_H-elongata_contig145626.3119.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 3.340e-11
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 2 
Query:   38 STWTLREEHYAKLRTVHHRVLLRIIGTQRKRTDHRITLYYRALEITR*ESIETTLRTRILLWAGTLIRMSGGRL 259
            +TW+    HY  LR++HHR+LLR+IG +RK+  +R   Y + L+    +S+E T+R R LL+AG+L R   GRL
Sbjct:    9 TTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGSLARQPDGRL 82
[Close]
BLAST of mRNA_H-elongata_contig145626.3119.1 vs. uniprot
Match: A0A6H5KN66_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN66_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 7.730e-11
Identity = 33/73 (45.21%), Postives = 48/73 (65.75%), Query Frame = 2 
Query:   41 TWTLREEHYAKLRTVHHRVLLRIIGTQRKRTDHRITLYYRALEITR*ESIETTLRTRILLWAGTLIRMSGGRL 259
            TW  R++ Y  LRT+HHR+LLR++G QR +  +R   Y + L+    +S+E+T+R R LL+AG L R   GRL
Sbjct:  707 TWAPRQDQYRTLRTIHHRLLLRVVGYQRMKCTYRQLSYAQTLKRVGCQSVESTIRQRRLLFAGALARQPDGRL 779
[Close]
BLAST of mRNA_H-elongata_contig145626.3119.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 9.540e-11
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 2 
Query:   41 TWTLREEHYAKLRTVHHRVLLRIIGTQRKRTDHRITLYYRALEITR*ESIETTLRTRILLWAGTLIRMSGGRL 259
            TW+    HY  LR++HHR+LLR+IG +RK+  +R   Y + L     ES+E T+R R LL+AG L R   GRL
Sbjct:  142 TWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLRRVECESVEPTIRQRRLLFAGALARQPDGRL 214
[Close]
BLAST of mRNA_H-elongata_contig145626.3119.1 vs. uniprot
Match: A0A6H5L6U6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U6_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.360e-10
Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 2 
Query:   41 TWTLREEHYAKLRTVHHRVLLRIIGTQRKRTDHRITLYYRALEITR*ESIETTLRTRILLWAGTLIRMSGGRL 259
            TW+    HY  LR++HHR+LLR+IG +RK+  +R   Y + L+    +S+E T+R R LL AG L R S GRL
Sbjct:  142 TWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLLAGALARQSDGRL 214
[Close]
BLAST of mRNA_H-elongata_contig145626.3119.1 vs. uniprot
Match: A0A6H5KPA7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPA7_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.650e-10
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 2 
Query:   35 RSTWTLREEHYAKLRTVHHRVLLRIIGTQRKRTDHRITLYYRALEITR*ESIETTLRTRILLWAGTLIRMSGGRL 259
            R TW+    HY  LR++HHR+LLR+IG +RK+  +R   Y + L+    +S E T+R R LL+AG L R   GRL
Sbjct:  140 RMTWSPLSGHYQTLRSIHHRLLLRVIGDERKKDTYRQLSYAQTLKRIGCQSAEATIRQRRLLFAGALARQPDGRL 214
[Close]
BLAST of mRNA_H-elongata_contig145626.3119.1 vs. uniprot
Match: A0A6H5JBT6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT6_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.450e-10
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 2 
Query:   41 TWTLREEHYAKLRTVHHRVLLRIIGTQRKRTDHRITLYYRALEITR*ESIETTLRTRILLWAGTLIRMSGGRL 259
            TW+    HY  LR++HHR+LLR+IG +RK+  +R   Y + L+    +S+E T+R R LL+AG L R   GRL
Sbjct:  286 TWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRL 358
[Close]
BLAST of mRNA_H-elongata_contig145626.3119.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.610e-10
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 2 
Query:   41 TWTLREEHYAKLRTVHHRVLLRIIGTQRKRTDHRITLYYRALEITR*ESIETTLRTRILLWAGTLIRMSGGRL 259
            TW+    HY  LR++HHR+LLR+IG +RK+  +R   Y + L+    +S+E T+R R LL+AG L R   GRL
Sbjct:  166 TWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRL 238
[Close]
BLAST of mRNA_H-elongata_contig145626.3119.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.660e-10
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 2 
Query:   41 TWTLREEHYAKLRTVHHRVLLRIIGTQRKRTDHRITLYYRALEITR*ESIETTLRTRILLWAGTLIRMSGGRL 259
            TW+    HY  LR++HHR+LLR+IG +RK+  +R   Y + L+    +S+E T+R R LL+AG L R   GRL
Sbjct:  494 TWSPLSRHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRL 566
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145626.3119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001AA1A1FE7.350e-1957.14hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
A0A6H5JS19_9PHAE1.100e-1147.95Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JYE2_9PHAE3.340e-1144.59Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KN66_9PHAE7.730e-1145.21Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JAH7_9PHAE9.540e-1146.58Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L6U6_9PHAE1.360e-1046.58Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KPA7_9PHAE1.650e-1045.33Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JBT6_9PHAE2.450e-1045.21Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1X4_9PHAE2.610e-1045.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KS82_9PHAE2.660e-1045.21Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145626contigH-elongata_contig145626:1031..1643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size271
Cds size168
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145626.3119.1prot_H-elongata_contig145626.3119.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145626 1134..1643 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929866.625961-UTR-H-elongata_contig145626:1030..11331622929866.625961-UTR-H-elongata_contig145626:1030..1133Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig145626 1031..1133 -
1691679187.8927345-UTR-H-elongata_contig145626:1030..11331691679187.8927345-UTR-H-elongata_contig145626:1030..1133Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig145626 1031..1133 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929866.6483428-CDS-H-elongata_contig145626:1133..12621622929866.6483428-CDS-H-elongata_contig145626:1133..1262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145626 1134..1262 -
1691679187.9011204-CDS-H-elongata_contig145626:1133..12621691679187.9011204-CDS-H-elongata_contig145626:1133..1262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145626 1134..1262 -
1622929866.6659536-CDS-H-elongata_contig145626:1604..16431622929866.6659536-CDS-H-elongata_contig145626:1604..1643Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145626 1605..1643 -
1691679187.9147277-CDS-H-elongata_contig145626:1604..16431691679187.9147277-CDS-H-elongata_contig145626:1604..1643Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145626 1605..1643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145626.3119.1

>prot_H-elongata_contig145626.3119.1 ID=prot_H-elongata_contig145626.3119.1|Name=mRNA_H-elongata_contig145626.3119.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
VGPLDCTSHGAKKYVDPSRGTLRQTPHRAPPGLASHHRNTAQENRSSDYL
VLPCP*
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mRNA from alignment at H-elongata_contig145626:1031..1643-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145626.3119.1 ID=mRNA_H-elongata_contig145626.3119.1|Name=mRNA_H-elongata_contig145626.3119.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=613bp|location=Sequence derived from alignment at H-elongata_contig145626:1031..1643- (Himanthalia elongata Himel1 dioecious)
GTTGGTCCCCTGGACTGCACCTCTCACGGCGCTAAGAAGGTGTGGATGTT
CGGAGAGTTGGAATGAGTTCATTTTTTTTAAAATAAAAAATCGACTCTAC
GGTCGACAAGGGAACGAGACGGCTGAATCCTCCTCGAGATAGAAATTAAG
GCAAGCACCGCAGAATCGAGGTGGAGAAATCCTGTGTAACCCTACCCTAC
CCCGGCTGGTGCCTCCACAAAACCGACGTCCAGAATAAATGGGATAACAA
CCGAAAGTGGCCCTCTTGACAGACGCGTCAAGGACACGTCTCCATTCTAA
AACTAGTACATTTTACAAAAAGACATCTTGACGCACTGTCAATAACCTGT
CAACCGACAACTATGTCTTGTATGGATACAGTACGTGGACCCTTCGAGAG
GAACACTACGCCAAACTCCGCACCGTGCACCACCGGGTCTTGCTTCGCAT
CATCGGAACACAGCGCAAGAGAACAGATCATCGGATTACCTTGTACTACC
GTGCCCTTGAGATAACCCGGTGAGAGAGCATCGAGACAACGTTGCGCACA
AGAATACTTTTGTGGGCGGGGACGCTCATCCGAATGAGCGGCGGGCGGCT
GGCTGCCAAAGCG
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Coding sequence (CDS) from alignment at H-elongata_contig145626:1031..1643-

>mRNA_H-elongata_contig145626.3119.1 ID=mRNA_H-elongata_contig145626.3119.1|Name=mRNA_H-elongata_contig145626.3119.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig145626:1031..1643- (Himanthalia elongata Himel1 dioecious)
GTTGGTCCCCTGGACTGCACCTCTCACGGCGCTAAGAAGGTTGGTCCCCT
GGACTGCACCTCTCACGGCGCTAAGAAGTACGTGGACCCTTCGAGAGGAA
CACTACGCCAAACTCCGCACCGTGCACCACCGGGTCTTGCTTCGCATCAT
CGGAACACAGCGCAAGAGAACAGATCATCGGATTACCTTGTACTACCGTG
CCCTTGATACGTGGACCCTTCGAGAGGAACACTACGCCAAACTCCGCACC
GTGCACCACCGGGTCTTGCTTCGCATCATCGGAACACAGCGCAAGAGAAC
AGATCATCGGATTACCTTGTACTACCGTGCCCTTGA
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