mRNA_H-elongata_contig14557.3115.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14557.3115.1
Unique NamemRNA_H-elongata_contig14557.3115.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14557.3115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14557contigH-elongata_contig14557:5418..6587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_003970.1
Exons3
Model size820
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14557.3115.1prot_H-elongata_contig14557.3115.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14557 5828..6318 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929865.9475677-UTR-H-elongata_contig14557:5417..56871622929865.9475677-UTR-H-elongata_contig14557:5417..5687Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14557 5418..5687 +
1691679187.5802088-UTR-H-elongata_contig14557:5417..56871691679187.5802088-UTR-H-elongata_contig14557:5417..5687Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14557 5418..5687 +
1622929865.9636047-UTR-H-elongata_contig14557:5825..58271622929865.9636047-UTR-H-elongata_contig14557:5825..5827Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14557 5826..5827 +
1691679187.589812-UTR-H-elongata_contig14557:5825..58271691679187.589812-UTR-H-elongata_contig14557:5825..5827Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14557 5826..5827 +
1622929866.0295303-UTR-H-elongata_contig14557:6318..65871622929866.0295303-UTR-H-elongata_contig14557:6318..6587Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14557 6319..6587 +
1691679187.6350596-UTR-H-elongata_contig14557:6318..65871691679187.6350596-UTR-H-elongata_contig14557:6318..6587Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14557 6319..6587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929865.9892066-CDS-H-elongata_contig14557:5827..59851622929865.9892066-CDS-H-elongata_contig14557:5827..5985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14557 5828..5985 +
1691679187.60736-CDS-H-elongata_contig14557:5827..59851691679187.60736-CDS-H-elongata_contig14557:5827..5985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14557 5828..5985 +
1622929866.015608-CDS-H-elongata_contig14557:6197..63181622929866.015608-CDS-H-elongata_contig14557:6197..6318Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14557 6198..6318 +
1691679187.6231513-CDS-H-elongata_contig14557:6197..63181691679187.6231513-CDS-H-elongata_contig14557:6197..6318Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14557 6198..6318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14557.3115.1

>prot_H-elongata_contig14557.3115.1 ID=prot_H-elongata_contig14557.3115.1|Name=mRNA_H-elongata_contig14557.3115.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MTVETLRLHQLAKSSKLKASTMGLVQGHQSHVLDGIELGHAAWDPITQET
IIRGWIKADTLASPNQAHMIETFGKDMPKNTASLMNPKACII*
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mRNA from alignment at H-elongata_contig14557:5418..6587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14557.3115.1 ID=mRNA_H-elongata_contig14557.3115.1|Name=mRNA_H-elongata_contig14557.3115.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1170bp|location=Sequence derived from alignment at H-elongata_contig14557:5418..6587+ (Himanthalia elongata Himel1 dioecious)
AGGGTATTAACGCAAAAGAACGTCTCACGGCCTACATTATTTGTGTTAAC
GCCAGTGGTACCGCAAAAAAGCCGCTGAGCCCCCATAGGAATGACCGCGA
ACCCAAAGTACTTCCGCGAAGACGAAACATTGCTGCCAAAAGACAAAATA
AGCCTGAACCAGACGTGAGCGTGGTCAGACACTCGCACGCTAGGCTTTGG
TTAAGGCGCTTCCCCCACTACGTTCGCAAGATCACGTCGAAGCCCATTCT
TCTTCTCGTGGACAAGCATAGCAACTATGCCAGCCTGAAAGACCCGAACA
AGCAAGTAAAAGTAATGCAATTTATGCCTAATTATAAAAGAAAACATTCG
GGGATCATCCAGGAATGAAAAATGCTCTACAAGTCGGCCCTCTGGTCGGA
GCGGGAAGACATGACGGTGGAGACCCTGCGGCTGCACCAGCTGGCGAAAT
CTTCGAAATTGAAAGCGAGTACGATGGGGTTAGTGCAGGGCCACCAGTCG
CATGTACTGGACGGCATCGAACTTGGGCACGCAGCGTGGGACCCGATCAC
ACAGGAAACGATAATACGGTGAGTTTTCTGTTAATTCACGATTTTTGGGG
GATAATGTCTTCTGATGTACACCGCATTTGCCAGTAAGGAATCTTGGTTG
TTTTCTCCTTACCTTGTTATTTTTCTGTTGCGATTCTTTGTGTGTGGTGA
TGCCGCTGGATAAATCTTCACGGAACTTTTGCCGACTTTGCTACAGCATT
CACAATTCATTTCTCTTCCCACTTCTTCAGGGGCTGGATAAAAGCAGACA
CGCTCGCTTCCCCGAACCAAGCCCACATGATCGAGACTTTTGGCAAGGAC
ATGCCTAAAAACACGGCGTCGCTGATGAATCCAAAGGCCTGTATTATCTA
GCTGATGTAATTACCGGCTAAGTATTGGAATCAAACGCGGTACAGGATTA
TATGACTTGTGCGAAGAGCTTGAAGCACTGTATCTCAAGCCTGGTCAACA
GCAGTCGTACACGTCCCTCGAAGCCGCTAGCGCGTGTATCGTCTTGCAGG
ATGACGTAAGCATGGCCGAAGCTGTTCGACTCGATCTTGGGGCCGGAATT
CTGGCAGAGAACGGAGGTGTTGGGGAAGCCGACAAGGACTCAATAACGAA
CTAGGACGGGGAAAATAACA
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Coding sequence (CDS) from alignment at H-elongata_contig14557:5418..6587+

>mRNA_H-elongata_contig14557.3115.1 ID=mRNA_H-elongata_contig14557.3115.1|Name=mRNA_H-elongata_contig14557.3115.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig14557:5418..6587+ (Himanthalia elongata Himel1 dioecious)
ATGACGGTGGAGACCCTGCGGCTGCACCAGCTGGCGAAATCTTCGAAATT
GAAAGCGAGTACGATGGGGTTAGTGCAGGGCCACCAGTCGCATGTACTGG
ACGGCATCGAACTTGGGCACGCAGCGTGGGACCCGATCACACAGGAAACG
ATAATACGATGACGGTGGAGACCCTGCGGCTGCACCAGCTGGCGAAATCT
TCGAAATTGAAAGCGAGTACGATGGGGTTAGTGCAGGGCCACCAGTCGCA
TGTACTGGACGGCATCGAACTTGGGCACGCAGCGTGGGACCCGATCACAC
AGGAAACGATAATACGGGGCTGGATAAAAGCAGACACGCTCGCTTCCCCG
AACCAAGCCCACATGATCGAGACTTTTGGCAAGGACATGCCTAAAAACAC
GGCGTCGCTGATGAATCCAAAGGCCTGTATTATCTAGGGGCTGGATAAAA
GCAGACACGCTCGCTTCCCCGAACCAAGCCCACATGATCGAGACTTTTGG
CAAGGACATGCCTAAAAACACGGCGTCGCTGATGAATCCAAAGGCCTGTA
TTATCTAG
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