mRNA_H-elongata_contig145485.3109.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145485.3109.1
Unique NamemRNA_H-elongata_contig145485.3109.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig145485.3109.1 vs. uniprot
Match: D8LL29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL29_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 3.160e-19
Identity = 58/110 (52.73%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:    1 MSLSLKEQADEAASVETARLEAKEAKIKNDSKDKGGEADAVASLSKEGKTRKVVRNAGTKAG--------RKEMCMVKSTLGRLKRRVDGFWYSRLPFSGASGFRRRVLL 306
            M LSLK+QAD  AS ETAR EAKEA IK  S+ K G+A+A                              RKE+  VKSTLGRL+RRVDGFWYS+ PF+GASGFR+RVLL
Sbjct:    1 MGLSLKQQADTVASAETARFEAKEADIKKTSQ-KAGDAEAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXRRKELSKVKSTLGRLQRRVDGFWYSKFPFAGASGFRKRVLL 109
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BLAST of mRNA_H-elongata_contig145485.3109.1 vs. uniprot
Match: A0A6H5KWU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU5_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.030e-16
Identity = 58/115 (50.43%), Postives = 68/115 (59.13%), Query Frame = 1 
Query:    1 MSLSLKEQADEAASVETARLEAKEAKIKNDSKDKGGEADAVASLSKEGKTRKVVRNAGTKAG-------------RKEMCMVKSTLGRLKRRVDGFWYSRLPFSGASGFRRRVLL 306
            M LSLK+QAD  AS ETAR EAKEA+IK  S+ K G+A+A                                   RKE+  VKSTLGRL+RRVDGFWYS+ PF+GASGFR+RVLL
Sbjct:  367 MGLSLKQQADTVASTETARFEAKEAEIKKASQ-KAGDAEAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRKELSKVKSTLGRLQRRVDGFWYSKFPFAGASGFRKRVLL 480
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145485.3109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL29_ECTSI3.160e-1952.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWU5_9PHAE1.030e-1650.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145485contigH-elongata_contig145485:415..1117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_000890.1
Exons2
Model size306
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929865.3610075-CDS-H-elongata_contig145485:414..5161622929865.3610075-CDS-H-elongata_contig145485:414..516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145485 415..516 +
1691679187.354848-CDS-H-elongata_contig145485:414..5161691679187.354848-CDS-H-elongata_contig145485:414..516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145485 415..516 +
1622929865.3787725-CDS-H-elongata_contig145485:913..11171622929865.3787725-CDS-H-elongata_contig145485:913..1117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145485 914..1117 +
1691679187.3626158-CDS-H-elongata_contig145485:913..11171691679187.3626158-CDS-H-elongata_contig145485:913..1117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145485 914..1117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145485.3109.1prot_H-elongata_contig145485.3109.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145485 415..1117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145485.3109.1

>prot_H-elongata_contig145485.3109.1 ID=prot_H-elongata_contig145485.3109.1|Name=mRNA_H-elongata_contig145485.3109.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MSLSLKEQADEAASVETARLEAKEAKIKNDSKDKGGEADAVASLSKEGKT
RKVVRNAGTKAGRKEMCMVKSTLGRLKRRVDGFWYSRLPFSGASGFRRRV
LL
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mRNA from alignment at H-elongata_contig145485:415..1117+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145485.3109.1 ID=mRNA_H-elongata_contig145485.3109.1|Name=mRNA_H-elongata_contig145485.3109.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=703bp|location=Sequence derived from alignment at H-elongata_contig145485:415..1117+ (Himanthalia elongata Himel1 dioecious)
ATGAGCTTGAGTCTGAAAGAGCAAGCGGACGAAGCGGCGTCGGTGGAGAC
GGCGCGCTTGGAGGCGAAGGAGGCGAAGATAAAAAATGACTCCAAGGACA
AGGTGTGCATCGTTACAACCAGCGTCTTTAAATAAAAATATGTATATATA
AAGAGTCGATCTTATCCTTTTTATTAGGGAGGCGTTGGCTCGTTGGTGGT
TCTTCGGAAAGGGGGGAAGGGAGCGGGGGGTTGGGCGGACTGAAAAAAAC
GATCATGTTTCTCGGTGTTCATCGTCGTCGGTGAAGAGATAGGCGACAGC
GATGGGCTTACGCATATATGCTCTACCATTAAAAACGCGTTCGGCACGAG
ATGCGCAGCCCTTTCTTATACGCATCTTACTGTTTCCCGGCCAGCGCTTG
CCCGTCTTATATCGTTGTATCGTATTCCATTCCATCCCATATCATCCCAT
CCCATGATGTCACATGCTAACCCAACCTGACAATCGATGGTGAATCCAGG
GCGGAGAAGCCGATGCTGTCGCGAGCCTGTCAAAGGAAGGCAAGACACGT
AAGGTCGTCAGGAACGCCGGTACCAAAGCCGGACGCAAAGAGATGTGCAT
GGTGAAGTCGACCCTTGGCCGCTTGAAGCGTCGAGTGGACGGGTTCTGGT
ACTCAAGGCTGCCCTTCTCGGGAGCGAGTGGATTCCGCCGCCGTGTTCTG
CTG
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Coding sequence (CDS) from alignment at H-elongata_contig145485:415..1117+

>mRNA_H-elongata_contig145485.3109.1 ID=mRNA_H-elongata_contig145485.3109.1|Name=mRNA_H-elongata_contig145485.3109.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig145485:415..1117+ (Himanthalia elongata Himel1 dioecious)
ATGAGCTTGAGTCTGAAAGAGCAAGCGGACGAAGCGGCGTCGGTGGAGAC
GGCGCGCTTGGAGGCGAAGGAGGCGAAGATAAAAAATGACTCCAAGGACA
AGATGAGCTTGAGTCTGAAAGAGCAAGCGGACGAAGCGGCGTCGGTGGAG
ACGGCGCGCTTGGAGGCGAAGGAGGCGAAGATAAAAAATGACTCCAAGGA
CAAGGGCGGAGAAGCCGATGCTGTCGCGAGCCTGTCAAAGGAAGGCAAGA
CACGTAAGGTCGTCAGGAACGCCGGTACCAAAGCCGGACGCAAAGAGATG
TGCATGGTGAAGTCGACCCTTGGCCGCTTGAAGCGTCGAGTGGACGGGTT
CTGGTACTCAAGGCTGCCCTTCTCGGGAGCGAGTGGATTCCGCCGCCGTG
TTCTGCTGGGCGGAGAAGCCGATGCTGTCGCGAGCCTGTCAAAGGAAGGC
AAGACACGTAAGGTCGTCAGGAACGCCGGTACCAAAGCCGGACGCAAAGA
GATGTGCATGGTGAAGTCGACCCTTGGCCGCTTGAAGCGTCGAGTGGACG
GGTTCTGGTACTCAAGGCTGCCCTTCTCGGGAGCGAGTGGATTCCGCCGC
CGTGTTCTGCTG
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