mRNA_H-elongata_contig14536.3107.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14536.3107.1 vs. uniprot
Match: D7FW26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW26_ECTSI) HSP 1 Score: 307 bits (786), Expect = 1.770e-97 Identity = 193/413 (46.73%), Postives = 260/413 (62.95%), Query Frame = 1
Query: 1 MVASLGSTLTLSSLRDSWQVAVAASLTIFVSFATSELFGR-AFLRPQARREFVPVQLAIAFPNAGAFPLLLMESLCQQEAINIDYDGDSEECFRSATSIIFIYLVVFQFIFFSWGFHALGNNNALELNISRQS--TDLGGSTGVVEESFKTK--RGDGLTQANVDVVSNSVQNTEEYNKIPIDTR--------DGSMALMPAVEEG*-----KWAAKGHLLLRALSSPNIIAIAIAIVISAIPPLQEMLFGNPQAALWPLGAALQTLGTPTVTLSTVVMAASLMQVPKVSLENQDAIWSGQ-------------RLMMGALHVVCRLIAFPLFGFIAFWMARNTSLVMGSNRLMYLVLLIEFSVPSASLNIVSLNQLRMPATAGFMARLYIVQYFISMFTISAWIAIALNMLY 1146
M A G+TLT +L+D+WQ+ V S TI S + L GR +F RP+ RR F P LAIAFPN+ FPLLL+++LC+Q+ IN D+D D ECF AT +IFIY+VV+Q F+SWGF+ALG ++ LE ++ ++ + +T VE S + +GD L + S T + + +R G+ A A ++G WA L R + SPN+IA+AI + I+ IP LQE LF NP+A L PLGAA++T+G+PTV +ST+VMA SL+QVP V + A GQ R+++G LHVVCRLI P GF FW+ARN S VMG NRLM+L+LLIE ++PSA+ IVSLNQLRMPATAGFMARLY+ QY SM TI+AW A+A++++Y
Sbjct: 59 MTAGTGATLTPGTLQDAWQLVVTGSFTIGFSGVVAWLVGRVSFRRPEDRRAFRPAALAIAFPNSAGFPLLLVDALCEQDYINSDFDDDEVECFTQATGMIFIYVVVWQVWFYSWGFYALGQDDELERKLAGEAAKSPSEATTDDVEISSPCEIAQGDALPPRQAEGGSGRQSPTHDGAVVVGASRRNEGVSGTSGTAAASHAGKDGDDEGCCSWAGLRRRLWRLVVSPNMIAVAIGVTIAMIPALQEQLFDNPRAVLRPLGAAVETIGSPTVAVSTLVMAGSLVQVPTVGAASAAASQGGQGDDDGTLRRWRRFRILVGFLHVVCRLIVVPAVGFTLFWVARNQSSVMGENRLMHLILLIELAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMVTITAWTALAVHLVY 471
BLAST of mRNA_H-elongata_contig14536.3107.1 vs. uniprot
Match: A0A6H5JAX8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAX8_9PHAE) HSP 1 Score: 306 bits (783), Expect = 3.720e-97 Identity = 190/406 (46.80%), Postives = 250/406 (61.58%), Query Frame = 1
Query: 1 MVASLGSTLTLSSLRDSWQVAVAASLTIFVSFATSELFGRAFLR-PQARREFVPVQLAIAFPNAGAFPLLLMESLCQQEAINIDYDGDSEECFRSATSIIFIYLVVFQFIFFSWGFHALGNNNALELNISRQST----------DLGGSTGVVEESFKTKRGDGLTQANVDVVSNSVQNTEEYNKIPIDTRDGSMALMPAVEEG*KWAAKGHLLLRALSSPNIIAIAIAIVISAIPPLQEMLFGNPQAALWPLGAALQTLGTPTVTLSTVVMAASLMQVPKVSLENQDAIWSGQ-------------RLMMGALHVVCRLIAFPLFGFIAFWMARNTSLVMGSNRLMYLVLLIEFSVPSASLNIVSLNQLRMPATAGFMARLYIVQYFISMFTISAWIAIALNMLY 1146
M++SLG+TL +L++SWQ+ VA S T+ +S + + GR F R P+ RR F P LAI F N+ FPLLLM +LC+Q+ + DY+ D+ ECF AT +IFIY+VV+Q FF WGF+ALG+++ LE +++ Q T T + + G G A VV + T E + T G V EG WA + R L SPNII++ I +VI+ I PLQEMLF N ++ L PLGAALQT+GTP V +ST+VMA SL QVP V+ + GQ R++ G LHVVCRLI P GF FW+AR S VMG NRLM+L+LLIEF++PSA+ IVSLNQLRMPATAGFMARLY+ QY SM TI+AW A+A++++Y
Sbjct: 59 MISSLGATLNPEALKNSWQLVVAGSFTVALSGTVAWVVGRVFFRRPEDRRAFRPAGLAITFANSAGFPLLLMNALCEQDYVRSDYNDDALECFTQATGMIFIYVVVWQMYFFGWGFYALGHDDTLERSLTGQQTRTRTPSTKXXXXXXXTSSTSSARQEHGGVGRINAAEAVVIDIEPCTGEESSSEGTTNAGGTEDGGDVSEGGPWAGFKERVSRVLVSPNIISVTIGVVIAMIAPLQEMLFDNSRSILRPLGAALQTVGTPEVAVSTLVMAGSLAQVPTVAAASTQG---GQGDDDGTLRRKRRFRIIAGFLHVVCRLIVVPAIGFTLFWVARTQSSVMGENRLMHLILLIEFAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTITAWTALAVHLVY 461
BLAST of mRNA_H-elongata_contig14536.3107.1 vs. uniprot
Match: A0A6H5J918_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J918_9PHAE) HSP 1 Score: 177 bits (450), Expect = 2.720e-46 Identity = 180/623 (28.89%), Postives = 250/623 (40.13%), Query Frame = 1
Query: 1 MVASLGSTLTLSSLRDSWQVAVAASLTIFVSFATSELFGR-AFLRPQARREFVPVQLAIAFPNAGAFPLLLMESLCQQEAINIDYDGDSEECFRSA-------TSIIFI-------------------------YLVVFQFIFFSWGFHALGNNNALELNISRQSTDLGG--STGVVEESFKTK--RGDGLTQANVDVVSNSVQNTEEYNKIPIDTR--------DGSMALMPAVEEG*-----KWAAKGHLLLRALSSPNIIAIAIAIVISAIPPLQEMLFGNPQAALWPLGAALQ----------------TLGTPTVTLSTVVMAASLMQVPKVSLENQDAI-------------WSGQRLMMGALHVVCRLIA------------------------------------------------------------------------------------------------------------------------------------------------------------------FPLFGFIAFWMARNTSLVMGSNRLMYLVLLIEFSVPSASLNIVSLNQLRMPATAGFMARLYIVQYFISMFTISAWIAIALNMLY 1146
M A G+TLT +L+D+WQ+ V S TI S + L GR +F RP+ RR F P LAIAFPN+ FPLLL+++LC+Q+ IN + + + F + T+ ++I Y + Q F+SWGF+ALG ++ LE ++ + + +T VE S + +GD L D S + I +R G+ A E+G WA L R SPN+IA+AI ++I+ +P LQE+LF +P+A L P GAA++ T+G+PTV +ST+VMA SL+QVP V + A W R+++G LHVVCRLI P GF FW+ARN S VMG NRLM+L+LLIE ++PSA+ IVSLNQLRMPATAGFMARLY+ QY SM TI+AW A+A++++Y
Sbjct: 56 MTAGTGATLTPGTLQDAWQLVVTGSFTIGFSGVVAWLVGRVSFQRPEDRRAFRPAALAIAFPNSAGFPLLLVDALCEQDYIN-RWPTQNTKLFDNVLLWRGVETTGLYIATCELAPRPAACSHTLRRQGFSFHGYGQILQVWFYSWGFYALGQDDELERKLAGEEAKIPSEATTDDVEISSPCEIAQGDALPPLQADGGSGMQSPIHDGAVIVGASRRNEGVSGTGGTAVASHAGEDGDDAGCFSWAGLRRRLWRLAVSPNMIAVAIGVIIAMLPALQELLFDSPRAVLRPFGAAIEVGHCSLAATPVAIEQGTIGSPTVAVSTLVMAGSLVQVPTVGAGSAAATQGVQCDDDGTLRRWRRFRIVVGFLHVVCRLIVGEHADPRAARFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVVGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVPAVGFTLFWVARNQSSVMGENRLMHLILLIELAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTITAWTALAVHLVY 677
BLAST of mRNA_H-elongata_contig14536.3107.1 vs. uniprot
Match: A0A6H5J8G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8G0_9PHAE) HSP 1 Score: 154 bits (389), Expect = 4.860e-38 Identity = 94/196 (47.96%), Postives = 126/196 (64.29%), Query Frame = 1
Query: 586 WAAKGHLLLRALSSPNIIAIAIAIVISAIPPLQEMLFGNPQAALWPLGAALQTLGTPTVTLSTVVMAASLMQVPKVSLE-------NQDA--IWSGQRLMMGALHVVCRLIAFPLFGFIAFWMARNTSLVMGSNRLMYLVLLIEFSVPSASLNIVSLNQLRMPATAGFMARLYIVQYFISMFTISAWIAIALNMLY 1146
W H L SP I+A+ IVI I PLQ+MLF NPQA L PLG A+Q +G PTVT+S++VMA SL+ V V+ E N+ A IW R + G L V RL+A P F FW+A+ S VMG NRLM+L+LL+EF++P+A++ I L+Q+R+P TAGF++RL + QY S T+S W A+A+ MLY
Sbjct: 427 WEEAKHRAWALLVSPVIVAVVAGIVICTIEPLQDMLFHNPQALLRPLGGAIQAVGVPTVTVSSLVMAGSLVAVSAVADEAAPPAGGNEVAVPIWRRPRFVTGFLLVFLRLVAIPAAFFGIFWVAKTYSSVMGENRLMHLILLVEFAMPTATIMIPLLHQIRLPRTAGFISRLLVWQYAASSITVSFWTALAITMLY 622
BLAST of mRNA_H-elongata_contig14536.3107.1 vs. uniprot
Match: D7FW24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW24_ECTSI) HSP 1 Score: 130 bits (328), Expect = 3.810e-33 Identity = 81/162 (50.00%), Postives = 106/162 (65.43%), Query Frame = 1
Query: 688 MLFGNPQAALWPLGAALQTLGTPTVTLSTVVMAASLMQVPKV------SLENQDA---IWSGQRLMMGALHVVCRLIAFPLFGFIAFWMARNTSLVMGSNRLMYLVLLIEFSVPSASLNIVSLNQLRMPATAGFMARLYIVQYFISMFTISAWIAIALNMLY 1146
MLF NPQA L PLG A+Q +G PTVT+S++VMA SL+ V V S +A IW R +MG L V RLIA P F FW A+ S VMG NRLM+L+LL+EF++P+A++ I L+Q+R+P TAGF++RL + QY S T+S W A A+ MLY
Sbjct: 1 MLFHNPQALLRPLGGAIQAVGVPTVTVSSLVMAGSLVAVSAVANGAAPSAGGHEAAVPIWRRPRFVMGFLLVFLRLIAIPAAFFGVFWGAKTYSSVMGENRLMHLILLVEFAMPTATIMIPLLHQIRLPRTAGFISRLLVWQYAASSITVSFWTAFAITMLY 162
BLAST of mRNA_H-elongata_contig14536.3107.1 vs. uniprot
Match: A0A835Z6D5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6D5_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 2.320e-17 Identity = 87/337 (25.82%), Postives = 143/337 (42.43%), Query Frame = 1
Query: 7 ASLGSTLTLSSLRDSWQVAVAASLTIFVSFATSELFGRAFLRPQARREFVPVQLAIAFPNAGAFPLLLMESLCQQEAINIDYDGDSEECFRSATSIIFIYLVVFQFIFFSWGFHALGN--------------NNALELNISRQ--------------------------------------STDLGGSTGVVEESFKTKRGDGLTQANV-----DVVSNSVQNT-----------EEYNKIPI--------DTRDGSMALMPAVEEG*KWAAKGHLLLRALSSPNIIAIAIAIVISAIPPLQEMLFGNPQAALWPLGAALQTLGTPTVTLSTVVMAA 789
AS+G+ L+ S L + + VA ++ +S+ + L P R F V++A+ F N G+ PLL MESLC Q+ +N DYDG + ECF +ATS+IF+YL+ + F+SWGF+ L +N L ++I+ G + S D T A D + + ++ ++ + P D R +A +P + W + RA+ SP +A+ + + I +P L+E +F + + L P+GAA+ T+G PT+ L T++MAA
Sbjct: 16 ASMGANLSTSLLLEYSPLLVADTVIRAISWVVITACEK--LLPVEPRLFKAVKIAVLFCNVGSIPLLYMESLCDQDIVNADYDGSASECFAAATSMIFVYLITWHIWFYSWGFYELAKADDLDEKPTALPPVDNFLGVSITGDFDRPHSMAVSVVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAGGARTFKLSAAASECDSTTGARAAARAPDALLPPLSHSRCGSAASGPAADKAARAPAFASAAANPDVRANGLAPLPEKQRW--WLGGAGGVWRAVVSPPNVAVLLGVTIGVVPALREGMFHDATSPLRPIGAAIVTIGQPTIALQTLLMAA 348
BLAST of mRNA_H-elongata_contig14536.3107.1 vs. uniprot
Match: A0A1Z5JCX7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JCX7_FISSO) HSP 1 Score: 84.7 bits (208), Expect = 2.890e-14 Identity = 73/275 (26.55%), Postives = 121/275 (44.00%), Query Frame = 1
Query: 37 SLRDSWQVAVAASLTIFVSFATSELFGRAFLRPQARREFVPVQLAIAFPNAGAFPLLLMESLCQQEAINIDYD-----------GDSEECFRSATSIIFIYLVVFQFIFFSWGFHAL---------GNNNALELNISRQSTDLGGST--GVVEESFKTKRGDGLTQANVDVVSNSVQNTEEYNKIPIDTRDGSMALMPAVEEG*KWAAKGHLLLRALSSPNIIAIAIAIVISAIPPLQEMLFGNPQAALWPLGAALQTLGTPTVTLSTVVMAASL 795
S+ D W + VAA T+ +S+A + + G L P+ +F+ +++A +PN A P+L+ SLC+ + ++ G E C A S+IF+Y + F FF++G L + E+++SR LG G E S T+ + + V+N+++ T LSSP + +A IV I PL++ LF P A L +G A+ T+G + ++ST+V+AASL
Sbjct: 76 SIGDYWFLVVAAFATVGLSYAVATILGYIML-PRLEEDFMALRIAATYPNTVALPILIFPSLCEHAVVYENFTMNRTSSDSTGMGPIEACTADANSMIFVYFFGWSFCFFTFGLPELMRAAEAKQQSEDQTAEISLSRMDESLGTEVLQGNAERSSNTRSAKTSSTLFLQTVTNAIKQT-------------------------------------LSSPGFLTMAAGIVTGCIGPLRDALF-EPGAPLRFIGDAIHTMGIASSSVSTIVVAASL 311
BLAST of mRNA_H-elongata_contig14536.3107.1 vs. uniprot
Match: A0A1Z5K3J2_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K3J2_FISSO) HSP 1 Score: 79.3 bits (194), Expect = 1.760e-12 Identity = 73/264 (27.65%), Postives = 125/264 (47.35%), Query Frame = 1
Query: 37 SLRDSWQVAVAASLTIFVSFATSELFGRAFLRPQARREFVPVQLAIAFPNAGAFPLLLMESLCQQEAINIDY-----DGDS------EECFRSATSIIFIYLVVFQFIFFSWGFHALGNNNALELNISRQSTDLGGSTGVVEESFKTKRGDGLTQANVDVVSNSVQNTEEYNKIPIDTRDGSMALMPAVEEG*KWAAKGHLLLRALSSPNIIAIAIAIVISAIPPLQEMLFGNPQAALWPLGAALQTLGTPTVTLSTVVMAASL 795
S+ D W + VAA ++ +S+ + + G L P+ +F +++A +PN A P+L+ SLC+ + ++ DS E C A S+IF+Y + F FF++G L + Q+ ++ S ++ES T+ + Q N + SN+ NK S + V +++ + SSP +A+A IV I PL++ LF P A L +G A+ T+G + ++ST+V+AASL
Sbjct: 76 SIGDYWFIVVAAFSSLGLSYVVATVLGYMML-PRLEEDFKALRIAATYPNIVALPILIFPSLCEHAVVYENFTINRTSSDSTSLSPIEACTADANSMIFVYFFGWSFCFFTFGLPELMRAAEAKQQSEDQTAEI--SLSRMDESLGTE----VLQGNAERSSNA----RSTNK--------SSTFLQTVT---------NVIKQTFSSPGFLAMAAGIVTGCIGPLRDALF-EPGAPLRFIGDAIHTMGIASSSVSTIVVAASL 310
BLAST of mRNA_H-elongata_contig14536.3107.1 vs. uniprot
Match: B8BS46_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BS46_THAPS) HSP 1 Score: 78.6 bits (192), Expect = 3.560e-12 Identity = 107/462 (23.16%), Postives = 200/462 (43.29%), Query Frame = 1
Query: 7 ASLGSTLTLSSLRDSWQVAVAASLTIFVSFATSELFGRA-FLRPQARREFVPVQLAIAFPNAGAFPLLLMESLCQQEAINIDY--DGD--SEE---------CFRSATSIIFIYLVVFQFIFFSWGFHALGNNNALELNISRQSTDLGGSTGVV---EESFKT-----------KRGDGLT-QANVDVVSNSVQNTEEYNKIPIDTRDGSMALMPAVEEG*KWAAKGHLLLRALSSPNIIAIAIAIVISAIPPLQEMLFGNPQAALWPLGAALQTLGTPTVTLSTVVMAASLMQVP---------KVSLENQD-------------------------------------------AIWSGQRL-----MMGALHVVCRLIAFPLFGFIAFWMARNTSLVMGSNRLMYLVLLIEFSVPSASLNIVSLNQLRMPATAGFMARLYIVQYFISMFTISAWIAIAL 1134
A+L S++T + W V V+A I +SF + L G+ F R + + +F +++A AFPN A P+L+ +LC+ ++ + +GD +EE C + ++IF+Y + F+++ G+ L + + I + T L T VV ++SF+ + GL + V+ N EE IP + + S+ + A L + +SSP +A+ + + + IPPL++ LF P AL G+A+++LG+ + ++ T+++AASL+ + S+E+ D A+ S ++L M A + RLI P + ++ L +V+++ +P A L +++L + +A +A++Y+ Y +S TI+AW +I L
Sbjct: 60 ATLASSVTPEKIGSLWFVLVSAFGVISLSFGVATLLGKLPFFRVENKIDFDALRIAAAFPNIVALPILIFPTLCEFAVVHDSFYTEGDDVNEEATQVEKYRSCVDQSNAMIFVYFFAWNFLYWVLGYETLVRAGS-KRQIHNEET-LSTETSVVHNTDDSFEAVNHHQXXXLEQEENGGLEGRVTPKVIENECTTGEEV-AIPNEDKKTSVLRLIATA-----------LFKTISSPGFVAMILGFITACIPPLRDALF-EPGGALRFFGSAMESLGSASSSVGTIIVAASLVHQANDDNIRDGREDSIEHDDNATQTHQLHNECESSDTIQQTQSTRRRSSMSQFGGMVRRRSSLALQSIRKLRKPTLQMHAWFITSRLIVAPAIVSLIIIGMDCGGILSDIPSLAKMVVIVNAGLPGAQLCVITLKSKGLTDSASIVAKVYLPSYLLSAVTIAAWTSIGL 506 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14536.3107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14536.3107.1 >prot_H-elongata_contig14536.3107.1 ID=prot_H-elongata_contig14536.3107.1|Name=mRNA_H-elongata_contig14536.3107.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp MVASLGSTLTLSSLRDSWQVAVAASLTIFVSFATSELFGRAFLRPQARREback to top mRNA from alignment at H-elongata_contig14536:189..3219- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14536.3107.1 ID=mRNA_H-elongata_contig14536.3107.1|Name=mRNA_H-elongata_contig14536.3107.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3031bp|location=Sequence derived from alignment at H-elongata_contig14536:189..3219- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14536:189..3219- >mRNA_H-elongata_contig14536.3107.1 ID=mRNA_H-elongata_contig14536.3107.1|Name=mRNA_H-elongata_contig14536.3107.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at H-elongata_contig14536:189..3219- (Himanthalia elongata Himel1 dioecious)back to top |