mRNA_H-elongata_contig145356.3106.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145356.3106.1
Unique NamemRNA_H-elongata_contig145356.3106.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig145356.3106.1 vs. uniprot
Match: A0A6H5KKY0_9PHAE (Anaphase-promoting complex subunit 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY0_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 5.660e-19
Identity = 38/45 (84.44%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 QAALGAHSDVPKAHFLRLMNCMHHRDLQGSIDSLHRFFDYAVRRG 135
            QAALG+ SDVPKAHFLRL+NCMHHR+L+GS+DSLHR+FDYAVRRG
Sbjct:  186 QAALGSRSDVPKAHFLRLVNCMHHRELEGSLDSLHRYFDYAVRRG 230
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BLAST of mRNA_H-elongata_contig145356.3106.1 vs. uniprot
Match: D7FTQ0_ECTSI (Anaphase-promoting complex subunit 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ0_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 5.670e-19
Identity = 38/45 (84.44%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 QAALGAHSDVPKAHFLRLMNCMHHRDLQGSIDSLHRFFDYAVRRG 135
            QAALG+ SDVPKAHFLRL+NCMHHR+L+GS+DSLHR+FDYAVRRG
Sbjct:  225 QAALGSRSDVPKAHFLRLVNCMHHRELEGSLDSLHRYFDYAVRRG 269
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BLAST of mRNA_H-elongata_contig145356.3106.1 vs. uniprot
Match: A0A7S2U8I9_9STRA (Anaphase-promoting complex subunit 5 (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U8I9_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.950e-9
Identity = 23/39 (58.97%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   10 LGAHSDVPKAHFLRLMNCMHHRDLQGSIDSLHRFFDYAV 126
            LG++ ++P AHFLR +NCMHH +  G++DSLHR+FDYA+
Sbjct:  218 LGSYPELPAAHFLRFLNCMHHGERVGALDSLHRYFDYAM 256
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BLAST of mRNA_H-elongata_contig145356.3106.1 vs. uniprot
Match: A0A2R5GT38_9STRA (Anaphase-promoting complex subunit 5 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GT38_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.560e-8
Identity = 21/37 (56.76%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   25 DVPKAHFLRLMNCMHHRDLQGSIDSLHRFFDYAVRRG 135
            D+P+AHF+R +NC+ HR+ QG++DSLH +FDY +R G
Sbjct:  327 DLPRAHFVRYLNCLLHREYQGAVDSLHTYFDYCMRSG 363
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BLAST of mRNA_H-elongata_contig145356.3106.1 vs. uniprot
Match: W7U440_9STRA (Anaphase-promoting complex subunit 5 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U440_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.130e-8
Identity = 22/45 (48.89%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 QAALGAHSDVPKAHFLRLMNCMHHRDLQGSIDSLHRFFDYAVRRG 135
            +A L  H ++P+  FLR +N   HR++ G++D+LHR+FDYA+RRG
Sbjct:  233 EALLQQHPELPRGQFLRYLNSSRHREVAGALDALHRYFDYAIRRG 277
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BLAST of mRNA_H-elongata_contig145356.3106.1 vs. uniprot
Match: F0Y6Q2_AURAN (Anaphase-promoting complex subunit 5 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6Q2_AURAN)

HSP 1 Score: 55.8 bits (133), Expect = 7.450e-8
Identity = 21/37 (56.76%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:   25 DVPKAHFLRLMNCMHHRDLQGSIDSLHRFFDYAVRRG 135
            ++P+A FLR ++C+HHR+L G++D+LHR+FDYA  RG
Sbjct:  282 ELPRASFLRYLSCVHHRELLGALDALHRYFDYARARG 318
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BLAST of mRNA_H-elongata_contig145356.3106.1 vs. uniprot
Match: A0A7S2D4P3_9STRA (Anaphase-promoting complex subunit 5 (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D4P3_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.390e-7
Identity = 21/36 (58.33%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   28 VPKAHFLRLMNCMHHRDLQGSIDSLHRFFDYAVRRG 135
            +PKA++LR +NC HHRD  G++D+LHR+F+YA R G
Sbjct:   28 LPKAYWLRCLNCAHHRDHHGAVDALHRYFNYAARWG 63
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BLAST of mRNA_H-elongata_contig145356.3106.1 vs. uniprot
Match: A0A388K336_CHABU (Anaphase-promoting complex subunit 5 n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K336_CHABU)

HSP 1 Score: 54.7 bits (130), Expect = 1.900e-7
Identity = 20/34 (58.82%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:   25 DVPKAHFLRLMNCMHHRDLQGSIDSLHRFFDYAV 126
            ++PK H+LR +NC+HH D  G++DSLHR+FDY V
Sbjct:  393 EMPKIHYLRYLNCLHHGDYPGAMDSLHRYFDYRV 426
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BLAST of mRNA_H-elongata_contig145356.3106.1 vs. uniprot
Match: A0A7S4J3E1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J3E1_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 1.560e-5
Identity = 18/42 (42.86%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 QAALGAHSDVPKAHFLRLMNCMHHRDLQGSIDSLHRFFDYAV 126
            ++ L  + ++P AHFLR + C+   +  G+++SLHR+FDYAV
Sbjct:   72 RSVLSLYPELPSAHFLRFLRCLEEGERVGALESLHRYFDYAV 113
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BLAST of mRNA_H-elongata_contig145356.3106.1 vs. uniprot
Match: A0A7S2WV16_9STRA (Anaphase-promoting complex subunit 5 (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV16_9STRA)

HSP 1 Score: 45.8 bits (107), Expect = 7.270e-5
Identity = 17/31 (54.84%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:   43 FLRLMNCMHHRDLQGSIDSLHRFFDYAVRRG 135
            +LR +NC++HRD QG++  LH++FDYA+R G
Sbjct:    1 WLRSLNCLYHRDEQGALAGLHKYFDYAIRIG 31
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145356.3106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KKY0_9PHAE5.660e-1984.44Anaphase-promoting complex subunit 5 n=1 Tax=Ectoc... [more]
D7FTQ0_ECTSI5.670e-1984.44Anaphase-promoting complex subunit 5 n=1 Tax=Ectoc... [more]
A0A7S2U8I9_9STRA1.950e-958.97Anaphase-promoting complex subunit 5 (Fragment) n=... [more]
A0A2R5GT38_9STRA1.560e-856.76Anaphase-promoting complex subunit 5 n=1 Tax=Honda... [more]
W7U440_9STRA2.130e-848.89Anaphase-promoting complex subunit 5 n=2 Tax=Monod... [more]
F0Y6Q2_AURAN7.450e-856.76Anaphase-promoting complex subunit 5 n=1 Tax=Aureo... [more]
A0A7S2D4P3_9STRA1.390e-758.33Anaphase-promoting complex subunit 5 (Fragment) n=... [more]
A0A388K336_CHABU1.900e-758.82Anaphase-promoting complex subunit 5 n=1 Tax=Chara... [more]
A0A7S4J3E1_9STRA1.560e-542.86Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2WV16_9STRA7.270e-554.84Anaphase-promoting complex subunit 5 (Fragment) n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145356contigH-elongata_contig145356:1469..1603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog2880.D7FTQ0
Preferred nameAPC5
KEGG koko:K03352
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04657,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04657,map04914,map05166
KEGG ModuleM00389
GOsGO:0000151,GO:0000152,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005680,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0016567,GO:0019538,GO:0019941,GO:0030071,GO:0030163,GO:0031145,GO:0031331,GO:0031461,GO:0032270,GO:0032436,GO:0032446,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065007,GO:0070647,GO:0071704,GO:0090068,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905818,GO:1905820,GO:1990234,GO:2001252
EggNOG free text desc.protein K11-linked ubiquitination
EggNOG OGsKOG4322@1,KOG4322@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929862.448664-CDS-H-elongata_contig145356:1468..16031622929862.448664-CDS-H-elongata_contig145356:1468..1603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145356 1469..1603 +
1691679187.2409985-CDS-H-elongata_contig145356:1468..16031691679187.2409985-CDS-H-elongata_contig145356:1468..1603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145356 1469..1603 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145356.3106.1prot_H-elongata_contig145356.3106.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145356 1469..1603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145356.3106.1

>prot_H-elongata_contig145356.3106.1 ID=prot_H-elongata_contig145356.3106.1|Name=mRNA_H-elongata_contig145356.3106.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
QAALGAHSDVPKAHFLRLMNCMHHRDLQGSIDSLHRFFDYAVRRG
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mRNA from alignment at H-elongata_contig145356:1469..1603+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145356.3106.1 ID=mRNA_H-elongata_contig145356.3106.1|Name=mRNA_H-elongata_contig145356.3106.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig145356:1469..1603+ (Himanthalia elongata Himel1 dioecious)
CAGGCCGCACTCGGGGCGCACTCCGACGTGCCCAAGGCGCACTTCCTGCG
GCTGATGAACTGCATGCACCATCGAGATTTGCAGGGTTCGATCGACAGTC
TGCATCGGTTCTTCGACTACGCCGTCCGGAGAGGC
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Coding sequence (CDS) from alignment at H-elongata_contig145356:1469..1603+

>mRNA_H-elongata_contig145356.3106.1 ID=mRNA_H-elongata_contig145356.3106.1|Name=mRNA_H-elongata_contig145356.3106.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig145356:1469..1603+ (Himanthalia elongata Himel1 dioecious)
CAGGCCGCACTCGGGGCGCACTCCGACGTGCCCAAGGCGCACTTCCTGCG
GCTGATGAACTGCATGCACCATCGAGATTTGCAGGGTTCGATCGACAGTC
TGCATCGGTTCTTCGACTACGCCGTCCGGAGAGGCCAGGCCGCACTCGGG
GCGCACTCCGACGTGCCCAAGGCGCACTTCCTGCGGCTGATGAACTGCAT
GCACCATCGAGATTTGCAGGGTTCGATCGACAGTCTGCATCGGTTCTTCG
ACTACGCCGTCCGGAGAGGC
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