mRNA_H-elongata_contig145341.3104.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145341.3104.1
Unique NamemRNA_H-elongata_contig145341.3104.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig145341.3104.1 vs. uniprot
Match: D8LPQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPQ7_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.540e-6
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 ASNLSPVCVSRRLLSLAAYHRVVLARQGGDRVKAGLTFVVEDEDEDGESDQE 156
            A+NL+PVCVSR+LLS  AY R+ LARQ GD V+AGLTF    E E+G  D+E
Sbjct: 1488 AANLAPVCVSRQLLSEGAYRRLALARQAGDDVEAGLTF----EPEEGYDDEE 1535
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BLAST of mRNA_H-elongata_contig145341.3104.1 vs. uniprot
Match: A0A6H5LNS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNS9_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.080e-6
Identity = 42/88 (47.73%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:    1 ASNLSPVCVSRRLLSLAAYHRVVLARQGGDRVKAGLTFVVE----DEDEDGES------DQEGGQADDAVAAIATAGKTVDSDGQDHG 234
            A+NL+PVCVSR+LLS  AY R+ LARQ GD V+AGLTF  E    DE E G        +Q G  A  A+   AT       DG D+G
Sbjct: 1450 AANLAPVCVSRQLLSEGAYRRLALARQAGDDVEAGLTFEPEEGYDDEKERGAGADVKPKEQGGVNAGTAMGKGATPASGTGMDGGDNG 1537
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145341.3104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPQ7_ECTSI1.540e-661.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LNS9_9PHAE2.080e-647.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145341contigH-elongata_contig145341:149..1463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_002100.1
Exons2
Model size606
Cds size606
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929862.211371-CDS-H-elongata_contig145341:148..4441622929862.211371-CDS-H-elongata_contig145341:148..444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145341 149..444 +
1691679187.15401-CDS-H-elongata_contig145341:148..4441691679187.15401-CDS-H-elongata_contig145341:148..444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145341 149..444 +
1622929862.227372-CDS-H-elongata_contig145341:1153..14631622929862.227372-CDS-H-elongata_contig145341:1153..1463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145341 1154..1463 +
1691679187.1636462-CDS-H-elongata_contig145341:1153..14631691679187.1636462-CDS-H-elongata_contig145341:1153..1463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145341 1154..1463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145341.3104.1prot_H-elongata_contig145341.3104.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145341 149..1463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145341.3104.1

>prot_H-elongata_contig145341.3104.1 ID=prot_H-elongata_contig145341.3104.1|Name=mRNA_H-elongata_contig145341.3104.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=202bp
ASNLSPVCVSRRLLSLAAYHRVVLARQGGDRVKAGLTFVVEDEDEDGESD
QEGGQADDAVAAIATAGKTVDSDGQDHGEDLAATGQRMADFLLGGGGVNG
SGGAPQPAQDEEDDLYDDLYGGLTDETGHEASVKGSGKGRGDGDGDGGLD
SGGGDQDTGALSEGGTAAEGGKASRDTEAGTGKGVGGVAEDIGTRAVMNA
LK
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mRNA from alignment at H-elongata_contig145341:149..1463+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145341.3104.1 ID=mRNA_H-elongata_contig145341.3104.1|Name=mRNA_H-elongata_contig145341.3104.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1315bp|location=Sequence derived from alignment at H-elongata_contig145341:149..1463+ (Himanthalia elongata Himel1 dioecious)
GCGAGCAATCTATCTCCAGTGTGCGTCTCGCGTCGACTCCTCTCCTTGGC
AGCGTATCATCGGGTGGTTCTTGCGCGGCAGGGCGGTGACCGCGTCAAAG
CCGGACTCACCTTCGTGGTAGAAGATGAGGACGAGGACGGAGAAAGTGAT
CAAGAGGGTGGCCAAGCAGATGACGCGGTTGCTGCGATAGCGACAGCGGG
GAAGACGGTCGACAGCGATGGTCAGGATCATGGTGAGGATCTCGCGGCAA
CAGGGCAGAGGATGGCTGATTTTCTTTTAGGTGGGGGGGGGGTGAAGTGT
GCATGCGCTTCCGCTTGTTTCCCTTTTCCCAGGCCTCTGGGGTTGCGTCG
TCGTCGTTGTCGGAGAGGGTTGCCCAGCAAAAAGGAAGCACGATACTGCG
TCGTTTGTCGTTGTTGTAGGTTAGTCGGTTGGTTTGTTGATGTTGATTGG
TTGATTGGTTGATGTTGGCCAAGGCCCGCCGGTGGTCGAAAGGTCGTCTA
CTTAAAAAATATATATCTTGAAGCGGCTGGTACAGTAATGTAAGGTAAGC
TTTGTCGTGTCGACCTCTCTTTGTCTTCTACCGGTGTGGTTCCCTCTGCC
CCAAAGATGGTGGTACAGGCAATGATTTTCTAAAACCTAAGATCTAAGGT
TAAGAAAAAGGAAAAGTAAGGCTTGGGCATCATAGTGAGCGCGATACCCC
CCTCTCATCCCCTTTCCCCATTCTGCAGTACTGCAGTACGTCCTCTTACC
AACGGAAACGCGTGTTCACTTATGTCTTTGCCACGGCAACTGGGCGGCGA
CAGCCGTCAAAACTTCCTACCCGCCTCTGCTTTTCTGTGTTGTGTTGTGT
TGTGCTCACGGCTGCTCTCTACTATGCACGCTTGTTCGGCGCGTCGCCGT
CGTCATCCTCGCCGTCTTGTCAGGCGCCGGAGACCACGCTGCGGAGACCT
CGAGGCATGCAAGCACTAACGCCGTGGCCGGCAACAGCGGTAACGGTAGC
GGCAGCGGCAGTGGTGGTGCCCCCCAGCCGGCGCAAGATGAAGAGGACGA
CCTGTACGACGACTTGTACGGTGGCCTCACGGACGAGACAGGACACGAAG
CTAGTGTCAAGGGAAGCGGGAAAGGTCGCGGCGACGGCGATGGTGACGGC
GGCCTTGACAGCGGTGGAGGCGACCAAGACACGGGTGCGCTATCCGAGGG
AGGAACGGCTGCCGAAGGTGGAAAGGCGAGTCGAGACACGGAAGCTGGGA
CGGGAAAAGGCGTGGGCGGCGTGGCGGAGGACATCGGCACACGCGCGGTG
ATGAACGCACTGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig145341:149..1463+

>mRNA_H-elongata_contig145341.3104.1 ID=mRNA_H-elongata_contig145341.3104.1|Name=mRNA_H-elongata_contig145341.3104.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1212bp|location=Sequence derived from alignment at H-elongata_contig145341:149..1463+ (Himanthalia elongata Himel1 dioecious)
GCGAGCAATCTATCTCCAGTGTGCGTCTCGCGTCGACTCCTCTCCTTGGC
AGCGTATCATCGGGTGGTTCTTGCGCGGCAGGGCGGTGACCGCGTCAAAG
CCGGACTCACCTTCGTGGTAGAAGATGAGGACGAGGACGGAGAAAGTGAT
CAAGAGGGTGGCCAAGCAGATGACGCGGTTGCTGCGATAGCGACAGCGGG
GAAGACGGTCGACAGCGATGGTCAGGATCATGGTGAGGATCTCGCGGCAA
CAGGGCAGAGGATGGCTGATTTTCTTTTAGGTGGGGGGGGGGTGAAGCGA
GCAATCTATCTCCAGTGTGCGTCTCGCGTCGACTCCTCTCCTTGGCAGCG
TATCATCGGGTGGTTCTTGCGCGGCAGGGCGGTGACCGCGTCAAAGCCGG
ACTCACCTTCGTGGTAGAAGATGAGGACGAGGACGGAGAAAGTGATCAAG
AGGGTGGCCAAGCAGATGACGCGGTTGCTGCGATAGCGACAGCGGGGAAG
ACGGTCGACAGCGATGGTCAGGATCATGGTGAGGATCTCGCGGCAACAGG
GCAGAGGATGGCTGATTTTCTTTTAGGTGGGGGGGGGGTGAACGGCAGTG
GTGGTGCCCCCCAGCCGGCGCAAGATGAAGAGGACGACCTGTACGACGAC
TTGTACGGTGGCCTCACGGACGAGACAGGACACGAAGCTAGTGTCAAGGG
AAGCGGGAAAGGTCGCGGCGACGGCGATGGTGACGGCGGCCTTGACAGCG
GTGGAGGCGACCAAGACACGGGTGCGCTATCCGAGGGAGGAACGGCTGCC
GAAGGTGGAAAGGCGAGTCGAGACACGGAAGCTGGGACGGGAAAAGGCGT
GGGCGGCGTGGCGGAGGACATCGGCACACGCGCGGTGATGAACGCACTGA
AGCGGCAGTGGTGGTGCCCCCCAGCCGGCGCAAGATGAAGAGGACGACCT
GTACGACGACTTGTACGGTGGCCTCACGGACGAGACAGGACACGAAGCTA
GTGTCAAGGGAAGCGGGAAAGGTCGCGGCGACGGCGATGGTGACGGCGGC
CTTGACAGCGGTGGAGGCGACCAAGACACGGGTGCGCTATCCGAGGGAGG
AACGGCTGCCGAAGGTGGAAAGGCGAGTCGAGACACGGAAGCTGGGACGG
GAAAAGGCGTGGGCGGCGTGGCGGAGGACATCGGCACACGCGCGGTGATG
AACGCACTGAAG
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