mRNA_H-elongata_contig145333.3102.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145333.3102.1
Unique NamemRNA_H-elongata_contig145333.3102.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig145333.3102.1 vs. uniprot
Match: A0A6H5KUD2_9PHAE (Aconitate hydratase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUD2_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.070e-41
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 2
Query:    2 DATAQMAVLQFISSGLPKTACPTTIHCDHLIAAESGADADMDAAKVTNKEVYDFLASAGAKYGVGFWKPGSGIIHQV 232
            DATAQMAVLQFISSGLPKTACPTTIHCDHLIAAESGAD+DM AAKVTNKEVYDFLASAGAKYG+GFWKPGSGIIHQ+
Sbjct:   97 DATAQMAVLQFISSGLPKTACPTTIHCDHLIAAESGADSDMAAAKVTNKEVYDFLASAGAKYGIGFWKPGSGIIHQI 173          
BLAST of mRNA_H-elongata_contig145333.3102.1 vs. uniprot
Match: A0A836CC46_9STRA (Aconitate hydratase, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC46_9STRA)

HSP 1 Score: 141 bits (355), Expect = 2.610e-37
Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 2
Query:    2 DATAQMAVLQFISSGLPKTACPTTIHCDHLIAAESGADADMDAAKVTNKEVYDFLASAGAKYGVGFWKPGSGIIHQV 232
            DATAQMAVLQFISSGLP+TA PTTIHCDHLIAAE GADAD+ AA  TNKEVYDFL+SAGAKYG+GFWKPGSGIIHQ+
Sbjct:  106 DATAQMAVLQFISSGLPQTAVPTTIHCDHLIAAEKGADADLKAATTTNKEVYDFLSSAGAKYGMGFWKPGSGIIHQI 182          
BLAST of mRNA_H-elongata_contig145333.3102.1 vs. uniprot
Match: A0A7S2V7X3_9STRA (Aconitate hydratase, mitochondrial n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7X3_9STRA)

HSP 1 Score: 139 bits (351), Expect = 9.110e-37
Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = 2
Query:    2 DATAQMAVLQFISSGLPKTACPTTIHCDHLIAAESGADADMDAAKVTNKEVYDFLASAGAKYGVGFWKPGSGIIHQV 232
            DATAQMAVLQFISSGLPKTA P+TIHCDHLIAAE G+  D+ AAKVTNKEVYDFLASAGAKYG+GFW+PGSGIIHQ+
Sbjct:  103 DATAQMAVLQFISSGLPKTAVPSTIHCDHLIAAEKGSSDDLHAAKVTNKEVYDFLASAGAKYGIGFWQPGSGIIHQI 179          
BLAST of mRNA_H-elongata_contig145333.3102.1 vs. uniprot
Match: A0A7S3YLR6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLR6_HETAK)

HSP 1 Score: 139 bits (350), Expect = 9.590e-37
Identity = 66/77 (85.71%), Postives = 73/77 (94.81%), Query Frame = 2
Query:    2 DATAQMAVLQFISSGLPKTACPTTIHCDHLIAAESGADADMDAAKVTNKEVYDFLASAGAKYGVGFWKPGSGIIHQV 232
            DATAQMAVLQFISSGLPKTA P+TIHCDHLIAAE+G++AD+ AAK TN EVYDFLASAGAKYG+GFWKPGSGIIHQ+
Sbjct:    3 DATAQMAVLQFISSGLPKTAVPSTIHCDHLIAAENGSNADLAAAKSTNAEVYDFLASAGAKYGIGFWKPGSGIIHQI 79          
BLAST of mRNA_H-elongata_contig145333.3102.1 vs. uniprot
Match: A0A183X0T5_TRIRE (Aconitase domain-containing protein n=1 Tax=Trichobilharzia regenti TaxID=157069 RepID=A0A183X0T5_TRIRE)

HSP 1 Score: 127 bits (318), Expect = 1.480e-36
Identity = 60/77 (77.92%), Postives = 67/77 (87.01%), Query Frame = 2
Query:    2 DATAQMAVLQFISSGLPKTACPTTIHCDHLIAAESGADADMDAAKVTNKEVYDFLASAGAKYGVGFWKPGSGIIHQV 232
            DATAQMA+LQFISSGLP+ A P+T+HCDHLI A+ GA AD+  A  TNKEVYDFLASA AKYG+GFWKPGSGIIHQV
Sbjct:   11 DATAQMALLQFISSGLPRVAVPSTVHCDHLIEAKDGAGADLIRANDTNKEVYDFLASASAKYGIGFWKPGSGIIHQV 87          
BLAST of mRNA_H-elongata_contig145333.3102.1 vs. uniprot
Match: A0A2H1C4Y3_FASHE (Aconitase family protein (Fragment) n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A2H1C4Y3_FASHE)

HSP 1 Score: 132 bits (331), Expect = 1.580e-36
Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = 2
Query:    2 DATAQMAVLQFISSGLPKTACPTTIHCDHLIAAESGADADMDAAKVTNKEVYDFLASAGAKYGVGFWKPGSGIIHQV 232
            DATAQMA+LQFISSGLPK A P+TIHCDHLI A  GAD+D+D A  +NKEVYDFLASA AKYG+GFWKPGSGIIHQ+
Sbjct:   96 DATAQMAILQFISSGLPKVAVPSTIHCDHLIEARDGADSDLDRANDSNKEVYDFLASASAKYGIGFWKPGSGIIHQI 172          
BLAST of mRNA_H-elongata_contig145333.3102.1 vs. uniprot
Match: A0A813B7B0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B7B0_9DINO)

HSP 1 Score: 131 bits (329), Expect = 3.310e-36
Identity = 61/77 (79.22%), Postives = 69/77 (89.61%), Query Frame = 2
Query:    2 DATAQMAVLQFISSGLPKTACPTTIHCDHLIAAESGADADMDAAKVTNKEVYDFLASAGAKYGVGFWKPGSGIIHQV 232
            DATAQMAVLQFISSGLPK A P+TIHCDHLIAAE G+ AD+ AA   NKEVYDFL++AGAK+G+GFWKPGSGIIHQ+
Sbjct:   94 DATAQMAVLQFISSGLPKVAVPSTIHCDHLIAAEKGSSADLAAASEANKEVYDFLSTAGAKFGIGFWKPGSGIIHQI 170          
BLAST of mRNA_H-elongata_contig145333.3102.1 vs. uniprot
Match: W7TSY3_9STRA (Aconitate hydratase, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSY3_9STRA)

HSP 1 Score: 138 bits (347), Expect = 3.320e-36
Identity = 65/77 (84.42%), Postives = 73/77 (94.81%), Query Frame = 2
Query:    2 DATAQMAVLQFISSGLPKTACPTTIHCDHLIAAESGADADMDAAKVTNKEVYDFLASAGAKYGVGFWKPGSGIIHQV 232
            DATAQMAVLQFISSGLPKTA P+TIHCDHLIAAE+G+  D+ AA+VTNKEVYDFLASAGAK+G+GFWKPGSGIIHQ+
Sbjct:  144 DATAQMAVLQFISSGLPKTAVPSTIHCDHLIAAENGSAKDLHAAQVTNKEVYDFLASAGAKFGIGFWKPGSGIIHQI 220          
BLAST of mRNA_H-elongata_contig145333.3102.1 vs. uniprot
Match: A0A7S0P924_CAFRO (Aconitate hydratase, mitochondrial n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0P924_CAFRO)

HSP 1 Score: 137 bits (344), Expect = 8.170e-36
Identity = 64/77 (83.12%), Postives = 72/77 (93.51%), Query Frame = 2
Query:    2 DATAQMAVLQFISSGLPKTACPTTIHCDHLIAAESGADADMDAAKVTNKEVYDFLASAGAKYGVGFWKPGSGIIHQV 232
            DATAQMAVLQFISSGLPK A P+TIHCDHLIAAE+GADADM AAK  N+EVYDFLA+AGAK+G+GFW+PGSGIIHQ+
Sbjct:  103 DATAQMAVLQFISSGLPKVAAPSTIHCDHLIAAENGADADMKAAKDLNREVYDFLATAGAKFGIGFWRPGSGIIHQI 179          
BLAST of mRNA_H-elongata_contig145333.3102.1 vs. uniprot
Match: A0A0N4XQF2_NIPBR (Probable aconitate hydratase, mitochondrial (inferred by orthology to a C. elegans protein) n=1 Tax=Nippostrongylus brasiliensis TaxID=27835 RepID=A0A0N4XQF2_NIPBR)

HSP 1 Score: 127 bits (319), Expect = 1.280e-35
Identity = 60/77 (77.92%), Postives = 67/77 (87.01%), Query Frame = 2
Query:    2 DATAQMAVLQFISSGLPKTACPTTIHCDHLIAAESGADADMDAAKVTNKEVYDFLASAGAKYGVGFWKPGSGIIHQV 232
            DATAQMA+LQFISSGLPKTA P+TIHCDHLI A+ G D D+  AK  NKEVY+FL+SAG KYGVGFWKPGSGIIHQ+
Sbjct:   51 DATAQMAMLQFISSGLPKTAVPSTIHCDHLIEAQKGGDKDLARAKELNKEVYNFLSSAGNKYGVGFWKPGSGIIHQI 127          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145333.3102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUD2_9PHAE1.070e-4194.81Aconitate hydratase, mitochondrial n=2 Tax=Ectocar... [more]
A0A836CC46_9STRA2.610e-3787.01Aconitate hydratase, mitochondrial n=1 Tax=Tribone... [more]
A0A7S2V7X3_9STRA9.110e-3785.71Aconitate hydratase, mitochondrial n=1 Tax=Fibroca... [more]
A0A7S3YLR6_HETAK9.590e-3785.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A183X0T5_TRIRE1.480e-3677.92Aconitase domain-containing protein n=1 Tax=Tricho... [more]
A0A2H1C4Y3_FASHE1.580e-3679.22Aconitase family protein (Fragment) n=1 Tax=Fascio... [more]
A0A813B7B0_9DINO3.310e-3679.22Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
W7TSY3_9STRA3.320e-3684.42Aconitate hydratase, mitochondrial n=2 Tax=Monodop... [more]
A0A7S0P924_CAFRO8.170e-3683.12Aconitate hydratase, mitochondrial n=3 Tax=Cafeter... [more]
A0A0N4XQF2_NIPBR1.280e-3577.92Probable aconitate hydratase, mitochondrial (infer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145333contigH-elongata_contig145333:272..1397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929862.047698-CDS-H-elongata_contig145333:272..3581622929862.047698-CDS-H-elongata_contig145333:272..358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145333 273..358 -
1691679187.0812356-CDS-H-elongata_contig145333:272..3581691679187.0812356-CDS-H-elongata_contig145333:272..358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145333 273..358 -
1622929862.0669234-CDS-H-elongata_contig145333:1246..13971622929862.0669234-CDS-H-elongata_contig145333:1246..1397Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145333 1247..1397 -
1691679187.0946877-CDS-H-elongata_contig145333:1246..13971691679187.0946877-CDS-H-elongata_contig145333:1246..1397Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145333 1247..1397 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145333.3102.1prot_H-elongata_contig145333.3102.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145333 273..1397 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145333.3102.1

>prot_H-elongata_contig145333.3102.1 ID=prot_H-elongata_contig145333.3102.1|Name=mRNA_H-elongata_contig145333.3102.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
GRNGSDGRAPVHLVRPSQNRMPHDHPLRPPDRGRERRRCRHGRSQGHQQG
GLRFPRFRRRQVRCRVLEAWIGHHPPGWT
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mRNA from alignment at H-elongata_contig145333:272..1397-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145333.3102.1 ID=mRNA_H-elongata_contig145333.3102.1|Name=mRNA_H-elongata_contig145333.3102.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1126bp|location=Sequence derived from alignment at H-elongata_contig145333:272..1397- (Himanthalia elongata Himel1 dioecious)
GGACGCAACGGCTCAGATGGCCGTGCTCCAGTTCATCTCGTCCGGCCTTC CCAAAACCGCATGCCCCACGACCATCCATTGCGACCACCTGATCGCGGCA GAGAGCGGCGCCGATGCCGACATGGACGCAGCCAAGGTCACCAACAAGGA GGTACGTGCAGCGCAAAGGACTTCATTACTGTACAGTCCCGCCGGAGAAA GATCCTTCTCGACCAGTTCGATCGTGTGACACTCTTCAGAAATCCTACGT ATTATAGTTGAACGATCGAACTGTATGGCGTTAAGTTAAAAGATGGTTCG GATACTGTTGATTATTAACCTCGGGAGACCTCGTCGGTTTTTGTTGATAA AAATCGGTAATTAACATACTCACGTCTTGTTTACACCATGACAACGCCTT GAGAGGTGAACACCCGGGGGCCTGAGCGTCGTGAGATTCGAGTGTGGTTC GTCATTATTATTATAGCTTGTCAGCGCAAAAACGCCACCTGAGATTGATT TAGGCGGGTTTATGAATTGTATAAGATACTGTAGTCGCATTTAGATGAAG AGGATAATGTTAAGGAGAATCCCACCGTTATGCTGTATATTAATTAATAT TAATTCTAATACTAATACTAAGGATATTACTAATACTAATACTCTAATGC TAATACTAATACTAATACTAATGCAACTGATAGTACTAATACTAATGCTA TTACTAATACTAATGCTATTACTAATACTAATACTAATGCTAATACTAAT GCTAATACTAATACTAATGCTAATACGAATACTAATACTAATACTAATGC TATTACTAATACTAATGCTATTACTAATACTAATACTAATGCTAATACTA ATACTAATGCTAATACTAATGCTAATACTAATACTAATGCTAATACTAAT GCTAATACTAATGCTAATACTAATACTAATGCTATTACTAATACTCTTAT GCTAATACTAATACTAATACGAATGCTACTGCTAGTAATAATAATAATGC TAATACTATTACTGAATTACTGATGCTGTGTTGGTTCAGGTTTACGATTT CCTCGCTTCCGCCGGCGCCAAGTACGGTGTAGGGTTCTGGAAGCCTGGAT CGGGCATCATCCACCAGGTTGGACTA
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Coding sequence (CDS) from alignment at H-elongata_contig145333:272..1397-

>mRNA_H-elongata_contig145333.3102.1 ID=mRNA_H-elongata_contig145333.3102.1|Name=mRNA_H-elongata_contig145333.3102.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig145333:272..1397- (Himanthalia elongata Himel1 dioecious)
GGACGCAACGGCTCAGATGGCCGTGCTCCAGTTCATCTCGTCCGGCCTTC
CCAAAACCGCATGCCCCACGACCATCCATTGCGACCACCTGATCGCGGCA
GAGAGCGGCGCCGATGCCGACATGGACGCAGCCAAGGTCACCAACAAGGA
GGGACGCAACGGCTCAGATGGCCGTGCTCCAGTTCATCTCGTCCGGCCTT
CCCAAAACCGCATGCCCCACGACCATCCATTGCGACCACCTGATCGCGGC
AGAGAGCGGCGCCGATGCCGACATGGACGCAGCCAAGGTCACCAACAAGG
AGGTTTACGATTTCCTCGCTTCCGCCGGCGCCAAGTACGGTGTAGGGTTC
TGGAAGCCTGGATCGGGCATCATCCACCAGGTTGGACTGTTTACGATTTC
CTCGCTTCCGCCGGCGCCAAGTACGGTGTAGGGTTCTGGAAGCCTGGATC
GGGCATCATCCACCAGGTTGGACT
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