mRNA_H-elongata_contig145326.3101.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145326.3101.1
Unique NamemRNA_H-elongata_contig145326.3101.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145326.3101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145326contigH-elongata_contig145326:776..1264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size491
Cds size393
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929861.9699502-UTR-H-elongata_contig145326:775..8711622929861.9699502-UTR-H-elongata_contig145326:775..871Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig145326 776..871 +
1691679187.0429084-UTR-H-elongata_contig145326:775..8711691679187.0429084-UTR-H-elongata_contig145326:775..871Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig145326 776..871 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929861.9918697-CDS-H-elongata_contig145326:871..12641622929861.9918697-CDS-H-elongata_contig145326:871..1264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145326 872..1264 +
1691679187.0650237-CDS-H-elongata_contig145326:871..12641691679187.0650237-CDS-H-elongata_contig145326:871..1264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145326 872..1264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145326.3101.1prot_H-elongata_contig145326.3101.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145326 872..1264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145326.3101.1

>prot_H-elongata_contig145326.3101.1 ID=prot_H-elongata_contig145326.3101.1|Name=mRNA_H-elongata_contig145326.3101.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
MALSFHTRHHMCMRDVALAGIHEFYVTDPAPVRPYRNEGRTGSQGRKGRN
GDRSKNGDRDGDMNEYWGQGRKGGRWERELVVLPSESTDSEEDEREGVSP
TGNRNLQPQDSTPQRKRRITQMTKCQGQEAR
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mRNA from alignment at H-elongata_contig145326:776..1264+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145326.3101.1 ID=mRNA_H-elongata_contig145326.3101.1|Name=mRNA_H-elongata_contig145326.3101.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=489bp|location=Sequence derived from alignment at H-elongata_contig145326:776..1264+ (Himanthalia elongata Himel1 dioecious)
CGCAAACGGGCAACCAGCATCCACAGCCGCAATACCCGACGGGAAGCGAG
GGGCGGGATCGAGGATGGATGAAGATGTGCGGATAAGTGCAGGAAGATGG
CGCTGTCATTCCACACGCGGCATCATATGTGCATGCGTGACGTGGCGCTT
GCAGGTATCCATGAGTTCTATGTGACAGACCCAGCGCCTGTTCGACCATA
TCGTAACGAGGGGAGAACAGGGTCCCAGGGACGGAAAGGAAGGAACGGTG
ATAGGAGCAAGAATGGGGACAGGGACGGTGATATGAACGAATACTGGGGA
CAAGGAAGGAAAGGAGGTAGATGGGAGAGAGAGCTCGTTGTTTTACCAAG
TGAGAGTACAGATAGCGAGGAAGACGAAAGAGAGGGGGTGTCACCAACGG
GTAACCGGAACCTACAGCCGCAAGACTCGACGCCTCAGCGAAAACGTCGC
ATCACGCAGATGACCAAATGCCAGGGCCAGGAAGCGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig145326:776..1264+

>mRNA_H-elongata_contig145326.3101.1 ID=mRNA_H-elongata_contig145326.3101.1|Name=mRNA_H-elongata_contig145326.3101.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig145326:776..1264+ (Himanthalia elongata Himel1 dioecious)
ATGGCGCTGTCATTCCACACGCGGCATCATATGTGCATGCGTGACGTGGC
GCTTGCAGGTATCCATGAGTTCTATGTGACAGACCCAGCGCCTGTTCGAC
CATATCGTAACGAGGGGAGAACAGGGTCCCAGGGACGGAAAGGAAGGAAC
GGTGATAGGAGCAAGAATGGGGACAGGGACGGTGATATGAACGAATACTG
GGGACAAGGAAGGAAAGGAGGTAGATGGGAGAGAGAGCTCGTTGTTTTAC
CAAGTGAGAGTACAGATAGCGAGGAAGACGAAAGAGAGGGGGTGTCACCA
ACGGGTAACCGGAACCTACAGCCGCAAGACTCGACGCCTCAGCGAAAACG
TCGCATCACGCAGATGACCAAATGCCAGGGCCAGGAAGCGAGGATGGCGC
TGTCATTCCACACGCGGCATCATATGTGCATGCGTGACGTGGCGCTTGCA
GGTATCCATGAGTTCTATGTGACAGACCCAGCGCCTGTTCGACCATATCG
TAACGAGGGGAGAACAGGGTCCCAGGGACGGAAAGGAAGGAACGGTGATA
GGAGCAAGAATGGGGACAGGGACGGTGATATGAACGAATACTGGGGACAA
GGAAGGAAAGGAGGTAGATGGGAGAGAGAGCTCGTTGTTTTACCAAGTGA
GAGTACAGATAGCGAGGAAGACGAAAGAGAGGGGGTGTCACCAACGGGTA
ACCGGAACCTACAGCCGCAAGACTCGACGCCTCAGCGAAAACGTCGCATC
ACGCAGATGACCAAATGCCAGGGCCAGGAAGCGAGG
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