mRNA_H-elongata_contig145225.3095.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145225.3095.1
Unique NamemRNA_H-elongata_contig145225.3095.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig145225.3095.1 vs. uniprot
Match: D7G978_ECTSI (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G978_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 2.150e-15
Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    4 PVYHSKQRGGNAQICCGCAILPLQTTVRGPAPLAQPG-ELVVQE 132
            P YHSKQ   NAQ+CCGCAILPL TTVRGPAPLAQPG E +V+E
Sbjct:    7 PAYHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEE 50
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BLAST of mRNA_H-elongata_contig145225.3095.1 vs. uniprot
Match: A0A835YQX6_9STRA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQX6_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.600e-6
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    4 PVYHSKQRGGNAQICCGCAILPLQTTVRGPAPLAQPGE 117
            P YHSK +G +    CGCAILPL+T +RGPAP+   G+
Sbjct:    2 PAYHSKLQGTSVGDACGCAILPLRTNLRGPAPILPKGD 39
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BLAST of mRNA_H-elongata_contig145225.3095.1 vs. uniprot
Match: A0A7S2RMH4_9STRA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMH4_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.840e-6
Identity = 22/32 (68.75%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:    4 PVYHSKQRGGNAQICCGCAILPLQTTVRGPAP 99
            PVYHSK  G   Q  CGCA+LPL+T VRGPAP
Sbjct:   12 PVYHSKFTGQEGQEMCGCALLPLKTRVRGPAP 43
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BLAST of mRNA_H-elongata_contig145225.3095.1 vs. uniprot
Match: R1DRS6_EMIHU (Actin-related protein 2/3 complex subunit 3 n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DRS6_EMIHU)

HSP 1 Score: 50.8 bits (120), Expect = 2.220e-6
Identity = 21/37 (56.76%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:    7 VYHSKQRGGNAQICCGCAILPLQTTVRGPAPLAQPGE 117
            VYHS   G   ++ CGCAILPL+T++RGPA  A  GE
Sbjct:    3 VYHSSLNGTETEVACGCAILPLKTSIRGPAESAAEGE 39
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BLAST of mRNA_H-elongata_contig145225.3095.1 vs. uniprot
Match: A0A8J2WEU3_9STRA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WEU3_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 4.450e-6
Identity = 21/34 (61.76%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:    4 PVYHSKQRGGNAQICCGCAILPLQTTVRGPAPLA 105
            P YHSK  G  A   CGCA+LPL+T +RGPAP A
Sbjct:    2 PAYHSKIDGAGADEACGCALLPLKTKLRGPAPAA 35
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BLAST of mRNA_H-elongata_contig145225.3095.1 vs. uniprot
Match: A0A0M0JZA5_9EUKA (Actin-related protein 2 3 complex subunit 3 (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JZA5_9EUKA)

HSP 1 Score: 50.1 bits (118), Expect = 8.950e-6
Identity = 22/36 (61.11%), Postives = 25/36 (69.44%), Query Frame = 1 
Query:    7 VYHSKQRGGNAQICCGCAILPLQTTVRGPAPLAQPG 114
            VYHS +    AQ  CGC+ILP+ TT RGPAPLA  G
Sbjct:    2 VYHSAKNDEEAQQACGCSILPIVTTTRGPAPLAPEG 37
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BLAST of mRNA_H-elongata_contig145225.3095.1 vs. uniprot
Match: A0A7S0Q1V8_9EUKA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q1V8_9EUKA)

HSP 1 Score: 48.9 bits (115), Expect = 1.240e-5
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    7 VYHSKQRG-GNAQICCGCAILPLQTTVRGPAPLAQPGE 117
            VYHS      +A++ CGC+ILP++TT RGPAP+A  GE
Sbjct:    6 VYHSSLNDIADAEVVCGCSILPIKTTTRGPAPVASEGE 43
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BLAST of mRNA_H-elongata_contig145225.3095.1 vs. uniprot
Match: A0A7S1U2P7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2P7_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.400e-5
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    4 PVYHSKQRGGNAQICCGCAILPLQTTVRGPAPLAQPGE 117
            P YHSK    +A   CGCA+LPL+T+ RGPAP++  GE
Sbjct:   43 PAYHSKFAELDADEACGCALLPLRTSKRGPAPVSPDGE 80
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BLAST of mRNA_H-elongata_contig145225.3095.1 vs. uniprot
Match: F0Y6P7_AURAN (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6P7_AURAN)

HSP 1 Score: 47.8 bits (112), Expect = 3.310e-5
Identity = 22/39 (56.41%), Postives = 24/39 (61.54%), Query Frame = 1 
Query:    4 PVYHSKQRGGNA-QICCGCAILPLQTTVRGPAPLAQPGE 117
            P YHSK  G       CGCA+LPL+T  RGPAPL   GE
Sbjct:    2 PAYHSKYAGAETGDEACGCALLPLKTKTRGPAPLMADGE 40
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BLAST of mRNA_H-elongata_contig145225.3095.1 vs. uniprot
Match: D8RWB1_SELML (Actin-related protein 2/3 complex subunit 3 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RWB1_SELML)

HSP 1 Score: 47.0 bits (110), Expect = 6.450e-5
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    7 VYHS--KQRGGNAQICCGCAILPLQTTVRGPAPLAQPGE 117
            VYHS  K   G  Q  CGC +LPL+T ++GPAPLA PG+
Sbjct:    2 VYHSSFKDESGAGQ-ACGCPLLPLRTPIKGPAPLADPGQ 39
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145225.3095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G978_ECTSI2.150e-1577.27Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A835YQX6_9STRA1.600e-655.26Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A7S2RMH4_9STRA1.840e-668.75Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
R1DRS6_EMIHU2.220e-656.76Actin-related protein 2/3 complex subunit 3 n=3 Ta... [more]
A0A8J2WEU3_9STRA4.450e-661.76Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A0M0JZA5_9EUKA8.950e-661.11Actin-related protein 2 3 complex subunit 3 (Fragm... [more]
A0A7S0Q1V8_9EUKA1.240e-555.26Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A7S1U2P7_9STRA2.400e-555.26Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
F0Y6P7_AURAN3.310e-556.41Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
D8RWB1_SELML6.450e-556.41Actin-related protein 2/3 complex subunit 3 n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145225contigH-elongata_contig145225:87..227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue2.2e-11
Seed eggNOG ortholog2880.D7G978
Preferred nameARPC3
KEGG rclassRC00002,RC00017
KEGG koko:K05756,ko:K07541,ko:K09680
KEGG ReactionR02971,R03018,R04391,R05919
KEGG Pathwayko00563,ko00770,ko01100,ko04144,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,map00563,map00770,map01100,map04144,map04666,map04810,map05100,map05130,map05131,map05132
KEGG ModuleM00120
GOsGO:0003674,GO:0005198,GO:0005200,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005884,GO:0005885,GO:0006996,GO:0007010,GO:0007015,GO:0008064,GO:0008150,GO:0009987,GO:0010638,GO:0015629,GO:0016043,GO:0030027,GO:0030029,GO:0030036,GO:0030424,GO:0030426,GO:0030427,GO:0030832,GO:0030833,GO:0030838,GO:0031252,GO:0031334,GO:0031941,GO:0032271,GO:0032273,GO:0032535,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033267,GO:0034314,GO:0042995,GO:0043005,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044463,GO:0044464,GO:0045010,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051493,GO:0051495,GO:0061850,GO:0065007,GO:0065008,GO:0071840,GO:0090066,GO:0090723,GO:0090725,GO:0097435,GO:0097458,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0110053,GO:0120025,GO:0120038,GO:0150034,GO:1902903,GO:1902905
EggNOG free text desc.Arp2/3 complex-mediated actin nucleation
EggNOG OGsKOG3155@1,KOG3155@2759
EC2.7.1.33
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionActin-related protein 2/3 complex subunit 3
Ec32 orthologEc-13_002920.1
Exons1
Model size141
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929861.3542461-CDS-H-elongata_contig145225:86..2271622929861.3542461-CDS-H-elongata_contig145225:86..227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145225 87..227 +
1691679186.7683718-CDS-H-elongata_contig145225:86..2271691679186.7683718-CDS-H-elongata_contig145225:86..227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145225 87..227 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145225.3095.1prot_H-elongata_contig145225.3095.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145225 87..227 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145225.3095.1

>prot_H-elongata_contig145225.3095.1 ID=prot_H-elongata_contig145225.3095.1|Name=mRNA_H-elongata_contig145225.3095.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
QPVYHSKQRGGNAQICCGCAILPLQTTVRGPAPLAQPGELVVQEFD*
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mRNA from alignment at H-elongata_contig145225:87..227+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145225.3095.1 ID=mRNA_H-elongata_contig145225.3095.1|Name=mRNA_H-elongata_contig145225.3095.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig145225:87..227+ (Himanthalia elongata Himel1 dioecious)
CAGCCGGTCTACCACTCTAAGCAAAGAGGCGGAAACGCGCAGATCTGCTG
CGGGTGTGCAATTCTCCCGCTCCAGACGACCGTCAGGGGACCTGCTCCCT
TGGCACAACCAGGTGAGTTAGTTGTCCAGGAGTTCGATTAG
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Coding sequence (CDS) from alignment at H-elongata_contig145225:87..227+

>mRNA_H-elongata_contig145225.3095.1 ID=mRNA_H-elongata_contig145225.3095.1|Name=mRNA_H-elongata_contig145225.3095.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig145225:87..227+ (Himanthalia elongata Himel1 dioecious)
CAGCCGGTCTACCACTCTAAGCAAAGAGGCGGAAACGCGCAGATCTGCTG
CGGGTGTGCAATTCTCCCGCTCCAGACGACCGTCAGGGGACCTGCTCCCT
TGGCACAACCAGGTGAGTTAGTTGTCCAGGAGTTCGATTAGCAGCCGGTC
TACCACTCTAAGCAAAGAGGCGGAAACGCGCAGATCTGCTGCGGGTGTGC
AATTCTCCCGCTCCAGACGACCGTCAGGGGACCTGCTCCCTTGGCACAAC
CAGGTGAGTTAGTTGTCCAGGAGTTCGATTAG
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