mRNA_H-elongata_contig145.3084.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145.3084.1
Unique NamemRNA_H-elongata_contig145.3084.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145.3084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145contigH-elongata_contig145:24202..25092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size712
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145.3084.1prot_H-elongata_contig145.3084.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145 24260..24840 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929860.0183957-UTR-H-elongata_contig145:24201..242591622929860.0183957-UTR-H-elongata_contig145:24201..24259Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig145 24202..24259 +
1691679186.2421286-UTR-H-elongata_contig145:24201..242591691679186.2421286-UTR-H-elongata_contig145:24201..24259Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig145 24202..24259 +
1622929860.0761423-UTR-H-elongata_contig145:24840..250921622929860.0761423-UTR-H-elongata_contig145:24840..25092Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig145 24841..25092 +
1691679186.2709386-UTR-H-elongata_contig145:24840..250921691679186.2709386-UTR-H-elongata_contig145:24840..25092Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig145 24841..25092 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929860.0362537-CDS-H-elongata_contig145:24259..243391622929860.0362537-CDS-H-elongata_contig145:24259..24339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145 24260..24339 +
1691679186.2494073-CDS-H-elongata_contig145:24259..243391691679186.2494073-CDS-H-elongata_contig145:24259..24339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145 24260..24339 +
1622929860.0588584-CDS-H-elongata_contig145:24518..248401622929860.0588584-CDS-H-elongata_contig145:24518..24840Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145 24519..24840 +
1691679186.261427-CDS-H-elongata_contig145:24518..248401691679186.261427-CDS-H-elongata_contig145:24518..24840Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145 24519..24840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145.3084.1

>prot_H-elongata_contig145.3084.1 ID=prot_H-elongata_contig145.3084.1|Name=mRNA_H-elongata_contig145.3084.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
MEDVDDSSKLEIYPSVVGEHNAIKSNRSDDRILENEPTSNAITSAEEGSI
RTSRSLKRQHPFRCNGGASAAWSTSLQALTVAVPTASNIIECGPRSRGFP
YTSTGSDGMHLSRNPAQSLSTVESPCHIANLEV*
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mRNA from alignment at H-elongata_contig145:24202..25092+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145.3084.1 ID=mRNA_H-elongata_contig145.3084.1|Name=mRNA_H-elongata_contig145.3084.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=891bp|location=Sequence derived from alignment at H-elongata_contig145:24202..25092+ (Himanthalia elongata Himel1 dioecious)
GACCGGAATAAAGGAAGAAAGTGGAAAAGGGCGGGGAGAGCCTGGTGGAG
AGATCAAAATGGAAGACGTTGACGACTCTTCCAAGTTGGAAATATACCCT
TCGGTAGTCGGAGAGCACAATGCAATCAAGAGCAACAGGTACTTTTTGTA
TCGCAGCGTATTGTTAGCAACATACACGCAACAACCGTGCTATCAAAAAT
ATGTTTATGTAAGTGAGAGAGATCACACTCTCGAACATGTATTGAAATAA
TAGAAACATGAAAGCACAAAATATTAAAGTTGGCTCATCGATATACGGGA
CTTTAACAATTGCGCAGGAGCGACGATCGAATCCTTGAGAACGAGCCGAC
CTCAAACGCAATCACCAGCGCTGAAGAAGGCAGCATCAGGACATCCAGAT
CCCTGAAACGGCAGCATCCGTTCCGATGCAACGGTGGTGCGTCAGCCGCA
TGGTCGACGTCCCTTCAAGCCCTGACCGTGGCGGTACCCACAGCAAGCAA
TATAATCGAATGCGGCCCAAGAAGCCGTGGCTTTCCTTACACTTCGACAG
GTTCCGACGGGATGCATTTAAGTCGGAACCCTGCGCAATCCCTGTCCACC
GTCGAATCTCCATGTCACATTGCAAACCTCGAGGTCTAAACAAGAACAAC
ACAACACGGAGAAGTTCGACATACTGAAAGCCGCAATTTTAGGTGTCTTC
TCTTCATACCAGTGGCAGCAGCATCAGAAGCAACCATAAAATATACGTGT
TGACATTCCGTGGCAATACCTTGAAAGTGGCTTGGGTATTGTCCCCCCTT
GGGTGGCGGTAATAACGTCACATCTTACTCTCTGACTGGAACTATATCGA
CTAATCAAGAAAGAGGGGTCCCGCCTACGCCACACATGACG
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Coding sequence (CDS) from alignment at H-elongata_contig145:24202..25092+

>mRNA_H-elongata_contig145.3084.1 ID=mRNA_H-elongata_contig145.3084.1|Name=mRNA_H-elongata_contig145.3084.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig145:24202..25092+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGACGTTGACGACTCTTCCAAGTTGGAAATATACCCTTCGGTAGT
CGGAGAGCACAATGCAATCAAGAGCAACAGATGGAAGACGTTGACGACTC
TTCCAAGTTGGAAATATACCCTTCGGTAGTCGGAGAGCACAATGCAATCA
AGAGCAACAGGAGCGACGATCGAATCCTTGAGAACGAGCCGACCTCAAAC
GCAATCACCAGCGCTGAAGAAGGCAGCATCAGGACATCCAGATCCCTGAA
ACGGCAGCATCCGTTCCGATGCAACGGTGGTGCGTCAGCCGCATGGTCGA
CGTCCCTTCAAGCCCTGACCGTGGCGGTACCCACAGCAAGCAATATAATC
GAATGCGGCCCAAGAAGCCGTGGCTTTCCTTACACTTCGACAGGTTCCGA
CGGGATGCATTTAAGTCGGAACCCTGCGCAATCCCTGTCCACCGTCGAAT
CTCCATGTCACATTGCAAACCTCGAGGTCTAAGAGCGACGATCGAATCCT
TGAGAACGAGCCGACCTCAAACGCAATCACCAGCGCTGAAGAAGGCAGCA
TCAGGACATCCAGATCCCTGAAACGGCAGCATCCGTTCCGATGCAACGGT
GGTGCGTCAGCCGCATGGTCGACGTCCCTTCAAGCCCTGACCGTGGCGGT
ACCCACAGCAAGCAATATAATCGAATGCGGCCCAAGAAGCCGTGGCTTTC
CTTACACTTCGACAGGTTCCGACGGGATGCATTTAAGTCGGAACCCTGCG
CAATCCCTGTCCACCGTCGAATCTCCATGTCACATTGCAAACCTCGAGGT
CTAA
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