mRNA_H-elongata_contig1449.3081.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1449.3081.1
Unique NamemRNA_H-elongata_contig1449.3081.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig1449.3081.1 vs. uniprot
Match: D7FRY5_ECTSI (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRY5_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 5.180e-33
Identity = 65/78 (83.33%), Postives = 72/78 (92.31%), Query Frame = 1 
Query:    1 MTTTDTNDVEATVAQVIKCADAGADLVRITVQGKREARACKKIREMLDEKGYDVPLVADIHFQPAVALEVAEALEKIR 234
            MTTT+TNDV+ATVAQVIKCADAGADLVRITVQGKREA++CK IRE L+E GYDVPLVADIHFQP VA++VAE  EKIR
Sbjct:   53 MTTTNTNDVDATVAQVIKCADAGADLVRITVQGKREAKSCKLIREKLNELGYDVPLVADIHFQPKVAMDVAEVFEKIR 130
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BLAST of mRNA_H-elongata_contig1449.3081.1 vs. uniprot
Match: A0A7S3QZ12_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QZ12_DUNTE)

HSP 1 Score: 125 bits (313), Expect = 1.270e-31
Identity = 64/78 (82.05%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:    1 MTTTDTNDVEATVAQVIKCADAGADLVRITVQGKREARACKKIREMLDEKGYDVPLVADIHFQPAVALEVAEALEKIR 234
            MTTTDT DVEATVAQV KCADAGADLVRITVQG+REA+AC++IR+ L + GYDVPLVADIHFQPAVA+ VAEA EKIR
Sbjct:   85 MTTTDTKDVEATVAQVKKCADAGADLVRITVQGRREAKACQEIRQRLFQDGYDVPLVADIHFQPAVAMMVAEAFEKIR 162
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BLAST of mRNA_H-elongata_contig1449.3081.1 vs. uniprot
Match: A0A0D2KI61_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2KI61_9CHLO)

HSP 1 Score: 115 bits (287), Expect = 1.540e-31
Identity = 58/78 (74.36%), Postives = 65/78 (83.33%), Query Frame = 1 
Query:    1 MTTTDTNDVEATVAQVIKCADAGADLVRITVQGKREARACKKIREMLDEKGYDVPLVADIHFQPAVALEVAEALEKIR 234
            MTTTDT DV  TV QV +CADAGAD+VRITVQG+REA AC KIRE L + GYD PLVADIHFQPAVA+ VAEA EK++
Sbjct:    1 MTTTDTRDVAKTVEQVKRCADAGADIVRITVQGRREAEACMKIREQLFKDGYDTPLVADIHFQPAVAMMVAEAFEKVK 78
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BLAST of mRNA_H-elongata_contig1449.3081.1 vs. uniprot
Match: A0A383W8H6_TETOB (Uncharacterized protein n=3 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383W8H6_TETOB)

HSP 1 Score: 122 bits (305), Expect = 1.540e-30
Identity = 63/78 (80.77%), Postives = 68/78 (87.18%), Query Frame = 1 
Query:    1 MTTTDTNDVEATVAQVIKCADAGADLVRITVQGKREARACKKIREMLDEKGYDVPLVADIHFQPAVALEVAEALEKIR 234
            MTTTDT DV ATVAQV KCADAGAD+VRITVQG++EA AC KIRE L + GYDVPLVADIHFQPAVA+ VAEA EKIR
Sbjct:   88 MTTTDTRDVAATVAQVKKCADAGADIVRITVQGRKEAEACMKIREQLFKDGYDVPLVADIHFQPAVAMMVAEAFEKIR 165
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BLAST of mRNA_H-elongata_contig1449.3081.1 vs. uniprot
Match: A0A7S3DNF7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DNF7_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.550e-30
Identity = 58/78 (74.36%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:    1 MTTTDTNDVEATVAQVIKCADAGADLVRITVQGKREARACKKIREMLDEKGYDVPLVADIHFQPAVALEVAEALEKIR 234
            M TTDT DVEAT+ QV++CAD G DLVRITVQGKREA AC KIRE L +KGYD+PL AD+HFQP VA+ VAEA+EKIR
Sbjct:   99 MATTDTADVEATMEQVMRCADKGFDLVRITVQGKREANACLKIREGLFKKGYDIPLCADMHFQPKVAIAVAEAVEKIR 176
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BLAST of mRNA_H-elongata_contig1449.3081.1 vs. uniprot
Match: A0A250WQP3_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WQP3_9CHLO)

HSP 1 Score: 121 bits (303), Expect = 2.710e-30
Identity = 62/78 (79.49%), Postives = 68/78 (87.18%), Query Frame = 1 
Query:    1 MTTTDTNDVEATVAQVIKCADAGADLVRITVQGKREARACKKIREMLDEKGYDVPLVADIHFQPAVALEVAEALEKIR 234
            MTTTDT D+EATVAQV KCADAGAD+VRITVQGK+EA+AC  IR  L E GYDVPLVADIHFQPAVA+ VAE+ EKIR
Sbjct:   37 MTTTDTRDIEATVAQVKKCADAGADIVRITVQGKKEAQACADIRRRLFEDGYDVPLVADIHFQPAVAMMVAESFEKIR 114
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BLAST of mRNA_H-elongata_contig1449.3081.1 vs. uniprot
Match: A0A059LG22_9CHLO (GcpE (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LG22_9CHLO)

HSP 1 Score: 115 bits (288), Expect = 5.310e-30
Identity = 59/78 (75.64%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:    1 MTTTDTNDVEATVAQVIKCADAGADLVRITVQGKREARACKKIREMLDEKGYDVPLVADIHFQPAVALEVAEALEKIR 234
            MTT+DT DVEATVAQV +CADAGA+LVRITVQGK+EA AC KIRE L +  YD PLVADIHFQP VA+ VA+A EKIR
Sbjct:   68 MTTSDTRDVEATVAQVKRCADAGAELVRITVQGKKEAAACMKIRERLFQDNYDTPLVADIHFQPGVAMAVADAFEKIR 145
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BLAST of mRNA_H-elongata_contig1449.3081.1 vs. uniprot
Match: A0A061S1H7_9CHLO ((E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S1H7_9CHLO)

HSP 1 Score: 117 bits (292), Expect = 8.930e-29
Identity = 59/78 (75.64%), Postives = 68/78 (87.18%), Query Frame = 1 
Query:    1 MTTTDTNDVEATVAQVIKCADAGADLVRITVQGKREARACKKIREMLDEKGYDVPLVADIHFQPAVALEVAEALEKIR 234
            MTTTDT DV+ATV QV+KCADAGAD+VRITVQG+REA AC +IRE L +  Y++PLVADIHFQPAVAL VA+A EKIR
Sbjct:   84 MTTTDTRDVQATVDQVMKCADAGADMVRITVQGRREAEACCEIRERLFKHNYEIPLVADIHFQPAVALRVADAFEKIR 161
[Close]
BLAST of mRNA_H-elongata_contig1449.3081.1 vs. uniprot
Match: A0A2P6V0A4_9CHLO (Adenylate kinase isoenzyme 6 homolog n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0A4_9CHLO)

HSP 1 Score: 115 bits (289), Expect = 2.350e-28
Identity = 60/78 (76.92%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:    1 MTTTDTNDVEATVAQVIKCADAGADLVRITVQGKREARACKKIREMLDEKGYDVPLVADIHFQPAVALEVAEALEKIR 234
            MTTTDT DVEATV QV KCADAGAD+VRITVQGK+EA AC KIR+ L +  YDVPLVADIHFQP VA+ VA+A EKIR
Sbjct:  595 MTTTDTRDVEATVEQVKKCADAGADIVRITVQGKKEAEACGKIRDRLFQDKYDVPLVADIHFQPQVAMMVADAFEKIR 672
[Close]
BLAST of mRNA_H-elongata_contig1449.3081.1 vs. uniprot
Match: A0A0H3V8D4_HAELA (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase n=2 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A0H3V8D4_HAELA)

HSP 1 Score: 115 bits (288), Expect = 3.010e-28
Identity = 59/78 (75.64%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:    1 MTTTDTNDVEATVAQVIKCADAGADLVRITVQGKREARACKKIREMLDEKGYDVPLVADIHFQPAVALEVAEALEKIR 234
            MTTTDT DV+ TV QV KCADAGADLVRITVQG++EA AC +IRE L +  YDVPLVADIHFQPAVA+ VAEA EK+R
Sbjct:   42 MTTTDTRDVQGTVDQVKKCADAGADLVRITVQGRKEAEACMRIREQLFKDRYDVPLVADIHFQPAVAMMVAEAFEKVR 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1449.3081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRY5_ECTSI5.180e-3383.331-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate syn... [more]
A0A7S3QZ12_DUNTE1.270e-3182.05Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A0D2KI61_9CHLO1.540e-3174.36Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
A0A383W8H6_TETOB1.540e-3080.77Uncharacterized protein n=3 Tax=Scenedesmaceae Tax... [more]
A0A7S3DNF7_9STRA2.550e-3074.36Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A250WQP3_9CHLO2.710e-3079.49Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A059LG22_9CHLO5.310e-3075.64GcpE (Fragment) n=1 Tax=Helicosporidium sp. ATCC 5... [more]
A0A061S1H7_9CHLO8.930e-2975.64(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synth... [more]
A0A2P6V0A4_9CHLO2.350e-2876.92Adenylate kinase isoenzyme 6 homolog n=1 Tax=Micra... [more]
A0A0H3V8D4_HAELA3.010e-2875.641-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate syn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1449contigH-elongata_contig1449:8290..9978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue9.5e-28
Seed eggNOG ortholog2880.D7FRY5
Preferred nameHDS
KEGG rclassRC01486
KEGG koko:K03526
KEGG ReactionR08689,R10859
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00096
GOsGO:0001101,GO:0002376,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009617,GO:0009627,GO:0009719,GO:0009725,GO:0009751,GO:0009814,GO:0009862,GO:0009863,GO:0009941,GO:0009987,GO:0010033,GO:0014070,GO:0016491,GO:0016725,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0023052,GO:0031967,GO:0031975,GO:0032787,GO:0032870,GO:0035690,GO:0042221,GO:0042493,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0046429,GO:0046490,GO:0046677,GO:0048037,GO:0050789,GO:0050794,GO:0050896,GO:0051536,GO:0051539,GO:0051540,GO:0051704,GO:0051707,GO:0051716,GO:0052592,GO:0055114,GO:0065007,GO:0070887,GO:0071229,GO:0071236,GO:0071310,GO:0071407,GO:0071446,GO:0071495,GO:0071704,GO:0090407,GO:0098542,GO:1901135,GO:1901576,GO:1901700,GO:1901701
EggNOG free text desc.4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity
EggNOG OGs2QSBY@2759,COG0821@1
EC1.17.7.1,1.17.7.3
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size234
Cds size234
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1449.3081.1prot_H-elongata_contig1449.3081.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1449 8290..9978 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929859.866858-CDS-H-elongata_contig1449:8289..83341622929859.866858-CDS-H-elongata_contig1449:8289..8334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1449 8290..8334 +
1691679186.1953266-CDS-H-elongata_contig1449:8289..83341691679186.1953266-CDS-H-elongata_contig1449:8289..8334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1449 8290..8334 +
1622929859.903982-CDS-H-elongata_contig1449:9088..91931622929859.903982-CDS-H-elongata_contig1449:9088..9193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1449 9089..9193 +
1691679186.2063506-CDS-H-elongata_contig1449:9088..91931691679186.2063506-CDS-H-elongata_contig1449:9088..9193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1449 9089..9193 +
1622929859.9160335-CDS-H-elongata_contig1449:9894..99781622929859.9160335-CDS-H-elongata_contig1449:9894..9978Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1449 9895..9978 +
1691679186.2174182-CDS-H-elongata_contig1449:9894..99781691679186.2174182-CDS-H-elongata_contig1449:9894..9978Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1449 9895..9978 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1449.3081.1

>prot_H-elongata_contig1449.3081.1 ID=prot_H-elongata_contig1449.3081.1|Name=mRNA_H-elongata_contig1449.3081.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MTTTDTNDVEATVAQVIKCADAGADLVRITVQGKREARACKKIREMLDEK
GYDVPLVADIHFQPAVALEVAEALEKIR
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mRNA from alignment at H-elongata_contig1449:8290..9978+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1449.3081.1 ID=mRNA_H-elongata_contig1449.3081.1|Name=mRNA_H-elongata_contig1449.3081.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1689bp|location=Sequence derived from alignment at H-elongata_contig1449:8290..9978+ (Himanthalia elongata Himel1 dioecious)
ATGACCACCACCGACACGAACGATGTTGAGGCTACCGTTGCTCAGGTGCG
TTGCACAGACGAAACTATTTGTTCGTCATCATGGAGAGTAATGACAAGTG
TTAGTGTTAGTGTTAGTATTAGTATTATTATTAGGATGTTCGGAGATGTT
CGGAGAGTTAGAATGAGCCTAAAGTCTTTTCAATAAAAATAATAATAATC
ATTATTATCATTATCATTATTATTATCATCATTGTCTCGTCCTCGTAGGA
TATCGAATATTTGTATCTGTATTATATAATACTACGTACACGTACTATAT
GTAGTATATAATGTATACTATATAGTGTAAGACTGTATACTATTAGAGCT
GCATTATAGACAATAATATCATACAATCTCTATTATAGTGTAAGACCGCA
TCAACCTTTAGAGGTAATGCAACCAAGTGCATTCGAATGTGGAGATACTA
CATATTAAAATCAAGTGGTAAACGCGCCATCAATAATTAAAGTCTTGGAG
CTCCCAATTGCAATGCTGCCATTTCTACTTTATTATACATAATATATTAA
TAGTTTATATAGCTTCTCCATTGTATTTCGTAATGTATACCGGTATGTTC
TAATACTGACATCCATCTCGGTTATTTATTTTTGGGGATGAGCCAACACT
AACACTAACACTGACCCTAACATTGACCCTAACATTGACCACTTGCACTA
ACACCGATACTAAAAGTAACACAAAAAATTCTCCACTTCGCTTCTCCGCC
TCTGATATCATTGGCTATCATTAACTATTACTGGGCATGACTGGAGTAGG
TAATTAAGTGCGCAGATGCGGGTGCTGACCTGGTTCGAATCACAGTTCAG
GGGAAAAGGGAGGCGCGAGCTTGCAAGAAAATTCGTGAGATGCTGGACGA
AAAGGTGAAACCATGAATATGCCGCCTCCAACACAACTTGCGCGGTACAA
AGTATTTGCCCATTTCAGTACAGTATTTATTGTAATATTAATGGTTAGCA
ATGGCTTCACCTCTAAACAGTACTTATTAACTTCGTGCTTCTTTTCGGAA
ATAATTCGTCAAAGCCGTCCAACCATTTTCAAAATTTGAAGCCAACGGTC
GAATACATTAAATGAGGAAAAGACTGGCCATACTGTTACCGTTGTACTTT
TTGCTCTCTTGGACTACTGTATGCTTGAATTTAATACTGAACGTTTAATT
ACCGTAATCCCCTCTGATCCCCCCCCACCCCCCCCATGATTTTCCCCTCC
GCCCACCTCCTTTTCGGCGAAAAAGTATGATTACGGGATTTTCCCCCGGG
GATATTAAAAATATAAAAATATCTCCCCTACCTACGATTTCACCTCCCGG
TTCTTGAAGTGGCATGCGCCTATCGCTGAGGCACTAGTCGCGATTTCCCC
CCCCTAGACGCGATTTCCCCCCGGGGGGTTGATTTAAAATATATATATAT
ATCCGCACCGAACTCAGAGGAGATTACGGTAAGTACATGAGCTTTTGTTC
TGTGAAAGTATTGTAACGATATTTGATAATGCTCTGCATCAGAATCTAGA
ATTGGAACCTTGCTATGTGGTCACTCTTACTGAATCTTGCTAAACTTTAC
CTCAGGGTTACGACGTGCCGCTGGTAGCAGACATCCATTTTCAACCGGCC
GTTGCCTTAGAGGTGGCCGAAGCTTTAGAAAAGATCCGC
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Coding sequence (CDS) from alignment at H-elongata_contig1449:8290..9978+

>mRNA_H-elongata_contig1449.3081.1 ID=mRNA_H-elongata_contig1449.3081.1|Name=mRNA_H-elongata_contig1449.3081.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig1449:8290..9978+ (Himanthalia elongata Himel1 dioecious)
ATGACCACCACCGACACGAACGATGTTGAGGCTACCGTTGCTCAGATGAC
CACCACCGACACGAACGATGTTGAGGCTACCGTTGCTCAGGTAATTAAGT
GCGCAGATGCGGGTGCTGACCTGGTTCGAATCACAGTTCAGGGGAAAAGG
GAGGCGCGAGCTTGCAAGAAAATTCGTGAGATGCTGGACGAAAAGGTAAT
TAAGTGCGCAGATGCGGGTGCTGACCTGGTTCGAATCACAGTTCAGGGGA
AAAGGGAGGCGCGAGCTTGCAAGAAAATTCGTGAGATGCTGGACGAAAAG
GGTTACGACGTGCCGCTGGTAGCAGACATCCATTTTCAACCGGCCGTTGC
CTTAGAGGTGGCCGAAGCTTTAGAAAAGATCCGCGGTTACGACGTGCCGC
TGGTAGCAGACATCCATTTTCAACCGGCCGTTGCCTTAGAGGTGGCCGAA
GCTTTAGAAAAGATCCGC
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