mRNA_H-elongata_contig144815.3077.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144815.3077.1
Unique NamemRNA_H-elongata_contig144815.3077.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig144815.3077.1 vs. uniprot
Match: A0A6H5JJ74_9PHAE (TOG domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ74_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.880e-32
Identity = 66/74 (89.19%), Postives = 70/74 (94.59%), Query Frame = 3 
Query:  216 YTLLQGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLMDDGANTYRRTYLELFV 437
            +  ++GMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRL DDG NTYRRT+LELFV
Sbjct: 1303 FEAIEGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLTDDGNNTYRRTHLELFV 1376
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BLAST of mRNA_H-elongata_contig144815.3077.1 vs. uniprot
Match: D7FI13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI13_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 2.140e-32
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 3 
Query:  216 YTLLQGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLMDDGANTYRRTYLELFV 437
            +  ++GMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRL DDG N YRRT+LELFV
Sbjct:  486 FEAIEGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLTDDGNNAYRRTHLELFV 559
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BLAST of mRNA_H-elongata_contig144815.3077.1 vs. uniprot
Match: A0A7S2XY64_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY64_9STRA)

HSP 1 Score: 123 bits (308), Expect = 2.320e-28
Identity = 54/70 (77.14%), Postives = 64/70 (91.43%), Query Frame = 3 
Query:  228 QGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLMDDGANTYRRTYLELFV 437
            +G  VALG T+ILQYV+QGL+HPARRVR+VYWK+YN+LY+ GADALTPAYPRL DDG NTYRRT+LELF+
Sbjct:  275 EGCMVALGPTKILQYVMQGLYHPARRVRDVYWKIYNTLYMFGADALTPAYPRLEDDGLNTYRRTHLELFI 344
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BLAST of mRNA_H-elongata_contig144815.3077.1 vs. uniprot
Match: A0A6V1S7R5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S7R5_HETAK)

HSP 1 Score: 126 bits (317), Expect = 4.470e-28
Identity = 57/69 (82.61%), Postives = 65/69 (94.20%), Query Frame = 3 
Query:  231 GMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLMDDGANTYRRTYLELFV 437
            G +VALG TR+LQYVLQG++HPARRVR+VYWK+YNSLYI GADALTPAYPRL D+GANTYRRT+LELFV
Sbjct:  827 GCAVALGPTRVLQYVLQGMYHPARRVRDVYWKIYNSLYIYGADALTPAYPRLEDEGANTYRRTHLELFV 895
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BLAST of mRNA_H-elongata_contig144815.3077.1 vs. uniprot
Match: A0A1Z9QC94_9BACT (TOG domain-containing protein n=1 Tax=Phycisphaeraceae bacterium TMED231 TaxID=1986831 RepID=A0A1Z9QC94_9BACT)

HSP 1 Score: 122 bits (306), Expect = 1.380e-26
Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 3 
Query:  177 TPTHPLVVVFFTPYTLLQGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLMDDGANTYRRTYLELFV 437
            T  H +  VF      ++GM VALG  +ILQYVLQGL+HPARRVR+VYWKLYN++YI GADALT AYPRL DDG NTYRRT+LELFV
Sbjct: 1191 TSPHVIAAVF----EAIEGMIVALGPIKILQYVLQGLYHPARRVRDVYWKLYNTIYIYGADALTCAYPRLEDDGVNTYRRTHLELFV 1273
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BLAST of mRNA_H-elongata_contig144815.3077.1 vs. uniprot
Match: A0A7S3GVU2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVU2_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.440e-25
Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 3 
Query:  228 QGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLMDDGANTYRRTYLELFV 437
            + M VALG  ++ QYV+QGLFHPAR+VREVYWK+YNS+YI G DALTPAYPRL DDG N YRRT+LELF+
Sbjct:  387 EAMIVALGPAKLFQYVMQGLFHPARKVREVYWKIYNSMYIYGQDALTPAYPRLEDDGVNNYRRTHLELFI 456
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BLAST of mRNA_H-elongata_contig144815.3077.1 vs. uniprot
Match: A0A2P4YHC9_9STRA (Splicing factor 3B subunit 1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YHC9_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.320e-25
Identity = 51/74 (68.92%), Postives = 58/74 (78.38%), Query Frame = 3 
Query:  216 YTLLQGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLMDDGANTYRRTYLELFV 437
            +  ++G  VALG   ILQYVLQGLFHPARRVREVYWK+YNSLY+   D LTPAYP L DDG N+Y RTYLEL +
Sbjct:   99 FEAVEGCRVALGPHVILQYVLQGLFHPARRVREVYWKIYNSLYMYAQDGLTPAYPALDDDGVNSYNRTYLELCI 172
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BLAST of mRNA_H-elongata_contig144815.3077.1 vs. uniprot
Match: A0A7S3GVL6_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVL6_9STRA)

HSP 1 Score: 117 bits (293), Expect = 6.630e-25
Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 3 
Query:  228 QGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLMDDGANTYRRTYLELFV 437
            + M VALG  ++ QYV+QGLFHPAR+VREVYWK+YNS+YI G DALTPAYPRL DDG N YRRT+LELF+
Sbjct: 1137 EAMIVALGPAKLFQYVMQGLFHPARKVREVYWKIYNSMYIYGQDALTPAYPRLEDDGVNNYRRTHLELFI 1206
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BLAST of mRNA_H-elongata_contig144815.3077.1 vs. uniprot
Match: A0A813AG85_9DINO (SF3B1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AG85_9DINO)

HSP 1 Score: 114 bits (284), Expect = 5.180e-24
Identity = 50/74 (67.57%), Postives = 61/74 (82.43%), Query Frame = 3 
Query:  216 YTLLQGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLMDDGANTYRRTYLELFV 437
            +  ++ M V+LGV R+L YVLQGLFHPARR+REVYWKLYN+LY+ G DA+TP  PRL +DG NTY+RTYLEL V
Sbjct:  492 FEAIEAMRVSLGVHRVLLYVLQGLFHPARRIREVYWKLYNNLYVYGGDAMTPVLPRLENDGLNTYKRTYLELVV 565
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BLAST of mRNA_H-elongata_contig144815.3077.1 vs. uniprot
Match: A0A812NDD3_SYMMI (Sf3b1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812NDD3_SYMMI)

HSP 1 Score: 114 bits (285), Expect = 6.920e-24
Identity = 50/71 (70.42%), Postives = 60/71 (84.51%), Query Frame = 3 
Query:  225 LQGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLMDDGANTYRRTYLELFV 437
            ++G  V+LG   +L YVLQGLFHPAR+VR+V+WK+YNSLYI GAD LTP YPRL DDG NTYRRT+LELF+
Sbjct:  996 MEGCMVSLGAGTVLLYVLQGLFHPARKVRDVFWKIYNSLYIFGADGLTPFYPRLEDDGVNTYRRTHLELFI 1066
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144815.3077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJ74_9PHAE1.880e-3289.19TOG domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FI13_ECTSI2.140e-3287.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XY64_9STRA2.320e-2877.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1S7R5_HETAK4.470e-2882.61Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1Z9QC94_9BACT1.380e-2668.97TOG domain-containing protein n=1 Tax=Phycisphaera... [more]
A0A7S3GVU2_9STRA1.440e-2572.86Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A2P4YHC9_9STRA3.320e-2568.92Splicing factor 3B subunit 1 n=1 Tax=Phytophthora ... [more]
A0A7S3GVL6_9STRA6.630e-2572.86Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A813AG85_9DINO5.180e-2467.57SF3B1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A812NDD3_SYMMI6.920e-2470.42Sf3b1 protein n=1 Tax=Symbiodinium microadriaticum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144815contigH-elongata_contig144815:351..1491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue2e-29
Seed eggNOG ortholog2880.D7FI13
Preferred nameSF3B1
KEGG koko:K12828
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0001701,GO:0001824,GO:0001825,GO:0003002,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0005694,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009790,GO:0009792,GO:0009892,GO:0009893,GO:0009952,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016363,GO:0016604,GO:0016607,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034399,GO:0034622,GO:0034641,GO:0034693,GO:0040029,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0048519,GO:0048646,GO:0048856,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071005,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGsCOG5181@1,KOG0213@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-12_006670.1
Exons1
Model size1141
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144815.3077.1prot_H-elongata_contig144815.3077.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144815 584..790 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929859.5449927-UTR-H-elongata_contig144815:350..5831622929859.5449927-UTR-H-elongata_contig144815:350..583Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144815 351..583 +
1691679186.0909483-UTR-H-elongata_contig144815:350..5831691679186.0909483-UTR-H-elongata_contig144815:350..583Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144815 351..583 +
1622929859.5747676-UTR-H-elongata_contig144815:790..14911622929859.5747676-UTR-H-elongata_contig144815:790..1491Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144815 791..1491 +
1691679186.1138804-UTR-H-elongata_contig144815:790..14911691679186.1138804-UTR-H-elongata_contig144815:790..1491Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144815 791..1491 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929859.560995-CDS-H-elongata_contig144815:583..7901622929859.560995-CDS-H-elongata_contig144815:583..790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144815 584..790 +
1691679186.104472-CDS-H-elongata_contig144815:583..7901691679186.104472-CDS-H-elongata_contig144815:583..790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144815 584..790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144815.3077.1

>prot_H-elongata_contig144815.3077.1 ID=prot_H-elongata_contig144815.3077.1|Name=mRNA_H-elongata_contig144815.3077.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
MSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPR
LMDDGANTYRRTYLELFV*
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mRNA from alignment at H-elongata_contig144815:351..1491+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144815.3077.1 ID=mRNA_H-elongata_contig144815.3077.1|Name=mRNA_H-elongata_contig144815.3077.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1141bp|location=Sequence derived from alignment at H-elongata_contig144815:351..1491+ (Himanthalia elongata Himel1 dioecious)
GTGGGTCTTTCTGTTTATTATCTGTTTCCTGTTTTTTAGTTTTTATTTGT
TTCCCTTTTCGGCGGGTTGGAATAAGTTCAAGGGTTTTTTAAATAATAAT
GATAATGGGAGATTACCAAAAACGCGTGGCAAGCTTTGACATTTCTAACC
ATCCTCCTCCTCCTCTTTAACACCCCACCCCAACGCACCCCCTTGTTGTT
GTCTTTTTCACACCTTATACGCTCCTTCAGGGGATGTCGGTGGCCCTAGG
CGTGACTCGTATCCTGCAGTACGTACTCCAGGGCCTCTTCCACCCTGCGA
GGCGTGTTCGAGAGGTGTACTGGAAACTATACAACTCCCTCTATATTTTG
GGGGCAGACGCCCTGACGCCCGCGTACCCTCGCCTCATGGATGACGGGGC
CAACACATACCGGCGCACTTACCTCGAGCTGTTCGTGTGATTGATCGTTC
TGTCGCTTCAGCCGCGGAACAAATTTGTATGCTTGGTTCTTTTATTTCTC
TTTTTATCTTGGTTTGATTTATAAAATTAAAAAATAAACTGCCTAGGGTA
ATTAATGTTTTCATATTTGGTATGATTTGGTTTCTAGCGCCCGAGGGTGG
GGGCGCGGGGTCTCGGAGGAAAAGCTGATTTTTGCCATTAGTTTTTTTCT
TGTCCTCTACAGTAGCTCTCATGGCTATAATGGTTGATAAATACGCCACA
CGGATAGGTCAATTGGCGCGTGCGGTGCGGTAGGATTCTCTGGCAGATTG
TTTTTTTTGAGTCGTCGCTAACCCTAATGGGGGCGGGTTTTTTGTCCCTT
GATCCACGTGCTGTATGGATGACACATTGGCTGTTTTGATATTTCTTTTA
TTGAGCAGCTCGGATGGGAAGAAAAAGCAATAAGCGGGGCGCAAGAAGCA
GAGATGTCAAGGGGCGGCTGAATTCCGAATACCGAATACCACAATAAGTC
GTAAACGTAACTCGTGTTCCCTACTATATACGCGAAGGATCACTGTTGAT
CTTACAACAAGTTAGTGACAATGAGACATCACAGACACCTTTACTGCCGA
AGATTCCATGCTCCAGAGAGCGTCAAAATGCGCATCACGAGGAGTTCCTA
GATAGAACTTGAGGGTCCGTCGAACCAAAACCCCTTCCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig144815:351..1491+

>mRNA_H-elongata_contig144815.3077.1 ID=mRNA_H-elongata_contig144815.3077.1|Name=mRNA_H-elongata_contig144815.3077.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig144815:351..1491+ (Himanthalia elongata Himel1 dioecious)
ATGTCGGTGGCCCTAGGCGTGACTCGTATCCTGCAGTACGTACTCCAGGG
CCTCTTCCACCCTGCGAGGCGTGTTCGAGAGGTGTACTGGAAACTATACA
ACTCCCTCTATATTTTGGGGGCAGACGCCCTGACGCCCGCGTACCCTCGC
CTCATGGATGACGGGGCCAACACATACCGGCGCACTTACCTCGAGCTGTT
CGTGTGAATGTCGGTGGCCCTAGGCGTGACTCGTATCCTGCAGTACGTAC
TCCAGGGCCTCTTCCACCCTGCGAGGCGTGTTCGAGAGGTGTACTGGAAA
CTATACAACTCCCTCTATATTTTGGGGGCAGACGCCCTGACGCCCGCGTA
CCCTCGCCTCATGGATGACGGGGCCAACACATACCGGCGCACTTACCTCG
AGCTGTTCGTGTGA
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