mRNA_H-elongata_contig14477.3075.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14477.3075.1
Unique NamemRNA_H-elongata_contig14477.3075.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14477.3075.1 vs. uniprot
Match: D7FI56_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI56_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 2.230e-49
Identity = 170/425 (40.00%), Postives = 216/425 (50.82%), Query Frame = 1 
Query:    1 FSCKVCSNLLRDNVECSSCHNLFCREHLRINEATDSSPCPCKTCAFAKVP-------------------QPLLSFLPNIPVQRMADAVPSRCDGCGKSFSWGDLAKHACDRQTVVCEYASWGCSWKGQRQHRPQHLASSTCPGQLARAEHEVAKTSGXXXXXXXXXXTVCKRKEAIEIRAVAAETRCQELEVK---------VAAAEKSLREKD--AVIAKQTLTMETAVKLKAKAGERADAAGGRIKKSXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------TSVDIQQQLLGAMFTPRVATSSKT--------------QQGTAAGSPTASAXXXXSI--QQQQKQQTRSDATGKIVSTSDVAR-----PQS---VGTDAGCQAPVPATEACLKPYLERPHALLEKKIVVFWPR 1071
            FSC+ C NLLRD VEC +CH+LFCREHL +++   +SPCPC+ C+ A +                     P  +FLPNIP+QR+ADAVPSRCDGCG S SWG+L +HACD+Q V C     GCSW G+R  R  H ASSTCPG+LA A+ E  +                 R EA  +RA                      +AAAE+ L+E+D  A   +  +T  TA                     XXXXXXXXXXXXXXXXXXXXXXXXXXXX               ++     L  A F+P+ AT+                 ++ + AGS  A+     ++      +   R  A G + +   +AR     P++   V  D   QAPVPA EACLKPYLERP +LLEKK+VVFWPR
Sbjct:  114 FSCRACGNLLRDCVECPTCHSLFCREHLVVDKQNGTSPCPCEPCSLAPIATTLSAASTXXXXXXXRAHHHPREAFLPNIPLQRIADAVPSRCDGCGISLSWGELGRHACDQQLVPCGRRQHGCSWFGKRHEREAHEASSTCPGRLALAQAEALEA----------------RSEAARLRAAXXXXXXXXXXXXXXXXXXXXXLAAAERCLQERDQEAAALRGKITTMTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAMPFAAILNRAGFSPQTATTXXXXXXAPVRLPLAVPDRKKSGAGSRAAAIATTQTVVPSTASRASGRGTAKGTLSAAVQMARAGGSPPRASAGVMMDTASQAPVPAVEACLKPYLERPSSLLEKKVVVFWPR 522
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14477.3075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FI56_ECTSI2.230e-4940.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14477contigH-elongata_contig14477:224..1297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_003620.1
Exons1
Model size1074
Cds size1074
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929859.376424-CDS-H-elongata_contig14477:223..12971622929859.376424-CDS-H-elongata_contig14477:223..1297Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14477 224..1297 -
1691679186.0651639-CDS-H-elongata_contig14477:223..12971691679186.0651639-CDS-H-elongata_contig14477:223..1297Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14477 224..1297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14477.3075.1prot_H-elongata_contig14477.3075.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14477 224..1297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14477.3075.1

>prot_H-elongata_contig14477.3075.1 ID=prot_H-elongata_contig14477.3075.1|Name=mRNA_H-elongata_contig14477.3075.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=358bp
FSCKVCSNLLRDNVECSSCHNLFCREHLRINEATDSSPCPCKTCAFAKVP
QPLLSFLPNIPVQRMADAVPSRCDGCGKSFSWGDLAKHACDRQTVVCEYA
SWGCSWKGQRQHRPQHLASSTCPGQLARAEHEVAKTSGEIASVRAELATV
CKRKEAIEIRAVAAETRCQELEVKVAAAEKSLREKDAVIAKQTLTMETAV
KLKAKAGERADAAGGRIKKSGGSSHAARESSSTQTSRYHPAATTSTTSTS
VDIQQQLLGAMFTPRVATSSKTQQGTAAGSPTASAPTASSIQQQQKQQTR
SDATGKIVSTSDVARPQSVGTDAGCQAPVPATEACLKPYLERPHALLEKK
IVVFWPR*
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mRNA from alignment at H-elongata_contig14477:224..1297-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14477.3075.1 ID=mRNA_H-elongata_contig14477.3075.1|Name=mRNA_H-elongata_contig14477.3075.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1074bp|location=Sequence derived from alignment at H-elongata_contig14477:224..1297- (Himanthalia elongata Himel1 dioecious)
TTCTCCTGCAAAGTATGCTCGAACCTTCTCCGTGATAATGTGGAGTGCTC
CAGCTGTCACAACCTCTTCTGCCGTGAACACCTCCGCATCAACGAGGCCA
CCGACTCGAGCCCTTGCCCTTGCAAGACCTGCGCCTTCGCAAAGGTGCCG
CAGCCTCTATTATCCTTCCTTCCTAACATTCCCGTCCAGCGCATGGCCGA
CGCAGTGCCGTCGCGCTGCGATGGCTGCGGGAAATCCTTCTCTTGGGGTG
ACCTCGCAAAGCATGCTTGTGATCGCCAGACAGTCGTCTGCGAGTACGCG
AGTTGGGGCTGCTCTTGGAAGGGCCAACGCCAACACCGCCCCCAGCACCT
CGCATCTTCAACTTGCCCTGGCCAGCTAGCGCGCGCCGAGCATGAGGTTG
CCAAGACCAGCGGGGAGATCGCTTCCGTCCGCGCAGAGCTCGCGACCGTC
TGTAAGAGGAAGGAAGCTATCGAGATCCGGGCGGTGGCGGCCGAAACACG
CTGCCAGGAGCTGGAGGTGAAGGTCGCCGCGGCGGAAAAAAGTCTACGAG
AGAAAGACGCCGTCATCGCGAAGCAGACCTTGACGATGGAAACTGCTGTC
AAGTTGAAGGCGAAAGCGGGAGAAAGGGCCGATGCTGCTGGCGGCAGGAT
CAAGAAGTCCGGAGGATCGTCCCACGCGGCGAGGGAGTCATCGTCGACGC
AGACGTCGCGATACCATCCCGCTGCTACTACGAGCACTACTTCTACGTCT
GTAGACATTCAACAGCAGCTCCTTGGCGCAATGTTTACTCCGAGGGTCGC
CACCAGCAGCAAGACCCAACAGGGAACCGCAGCGGGCTCTCCGACTGCCT
CGGCACCGACGGCGTCATCGATTCAACAGCAGCAGAAGCAGCAGACGAGG
TCGGATGCGACCGGGAAGATCGTTTCGACATCGGACGTGGCGAGGCCTCA
ATCAGTGGGGACGGACGCGGGCTGCCAGGCACCCGTTCCGGCGACCGAAG
CGTGCCTGAAGCCGTACTTGGAGCGACCGCATGCTCTCCTGGAGAAGAAG
ATCGTTGTGTTCTGGCCAAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig14477:224..1297-

>mRNA_H-elongata_contig14477.3075.1 ID=mRNA_H-elongata_contig14477.3075.1|Name=mRNA_H-elongata_contig14477.3075.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2148bp|location=Sequence derived from alignment at H-elongata_contig14477:224..1297- (Himanthalia elongata Himel1 dioecious)
TTCTCCTGCAAAGTATGCTCGAACCTTCTCCGTGATAATGTGGAGTGCTC
CAGCTGTCACAACCTCTTCTGCCGTGAACACCTCCGCATCAACGAGGCCA
CCGACTCGAGCCCTTGCCCTTGCAAGACCTGCGCCTTCGCAAAGGTGCCG
CAGCCTCTATTATCCTTCCTTCCTAACATTCCCGTCCAGCGCATGGCCGA
CGCAGTGCCGTCGCGCTGCGATGGCTGCGGGAAATCCTTCTCTTGGGGTG
ACCTCGCAAAGCATGCTTGTGATCGCCAGACAGTCGTCTGCGAGTACGCG
AGTTGGGGCTGCTCTTGGAAGGGCCAACGCCAACACCGCCCCCAGCACCT
CGCATCTTCAACTTGCCCTGGCCAGCTAGCGCGCGCCGAGCATGAGGTTG
CCAAGACCAGCGGGGAGATCGCTTCCGTCCGCGCAGAGCTCGCGACCGTC
TGTAAGAGGAAGGAAGCTATCGAGATCCGGGCGGTGGCGGCCGAAACACG
CTGCCAGGAGCTGGAGGTGAAGGTCGCCGCGGCGGAAAAAAGTCTACGAG
AGAAAGACGCCGTCATCGCGAAGCAGACCTTGACGATGGAAACTGCTGTC
AAGTTGAAGGCGAAAGCGGGAGAAAGGGCCGATGCTGCTGGCGGCAGGAT
CAAGAAGTCCGGAGGATCGTCCCACGCGGCGAGGGAGTCATCGTCGACGC
AGACGTCGCGATACCATCCCGCTGCTACTACGAGCACTACTTCTACGTCT
GTAGACATTCAACAGCAGCTCCTTGGCGCAATGTTTACTCCGAGGGTCGC
CACCAGCAGCAAGACCCAACAGGGAACCGCAGCGGGCTCTCCGACTGCCT
CGGCACCGACGGCGTCATCGATTCAACAGCAGCAGAAGCAGCAGACGAGG
TCGGATGCGACCGGGAAGATCGTTTCGACATCGGACGTGGCGAGGCCTCA
ATCAGTGGGGACGGACGCGGGCTGCCAGGCACCCGTTCCGGCGACCGAAG
CGTGCCTGAAGCCGTACTTGGAGCGACCGCATGCTCTCCTGGAGAAGAAG
ATCGTTGTGTTCTGGCCAAGGTAATTCTCCTGCAAAGTATGCTCGAACCT
TCTCCGTGATAATGTGGAGTGCTCCAGCTGTCACAACCTCTTCTGCCGTG
AACACCTCCGCATCAACGAGGCCACCGACTCGAGCCCTTGCCCTTGCAAG
ACCTGCGCCTTCGCAAAGGTGCCGCAGCCTCTATTATCCTTCCTTCCTAA
CATTCCCGTCCAGCGCATGGCCGACGCAGTGCCGTCGCGCTGCGATGGCT
GCGGGAAATCCTTCTCTTGGGGTGACCTCGCAAAGCATGCTTGTGATCGC
CAGACAGTCGTCTGCGAGTACGCGAGTTGGGGCTGCTCTTGGAAGGGCCA
ACGCCAACACCGCCCCCAGCACCTCGCATCTTCAACTTGCCCTGGCCAGC
TAGCGCGCGCCGAGCATGAGGTTGCCAAGACCAGCGGGGAGATCGCTTCC
GTCCGCGCAGAGCTCGCGACCGTCTGTAAGAGGAAGGAAGCTATCGAGAT
CCGGGCGGTGGCGGCCGAAACACGCTGCCAGGAGCTGGAGGTGAAGGTCG
CCGCGGCGGAAAAAAGTCTACGAGAGAAAGACGCCGTCATCGCGAAGCAG
ACCTTGACGATGGAAACTGCTGTCAAGTTGAAGGCGAAAGCGGGAGAAAG
GGCCGATGCTGCTGGCGGCAGGATCAAGAAGTCCGGAGGATCGTCCCACG
CGGCGAGGGAGTCATCGTCGACGCAGACGTCGCGATACCATCCCGCTGCT
ACTACGAGCACTACTTCTACGTCTGTAGACATTCAACAGCAGCTCCTTGG
CGCAATGTTTACTCCGAGGGTCGCCACCAGCAGCAAGACCCAACAGGGAA
CCGCAGCGGGCTCTCCGACTGCCTCGGCACCGACGGCGTCATCGATTCAA
CAGCAGCAGAAGCAGCAGACGAGGTCGGATGCGACCGGGAAGATCGTTTC
GACATCGGACGTGGCGAGGCCTCAATCAGTGGGGACGGACGCGGGCTGCC
AGGCACCCGTTCCGGCGACCGAAGCGTGCCTGAAGCCGTACTTGGAGCGA
CCGCATGCTCTCCTGGAGAAGAAGATCGTTGTGTTCTGGCCAAGGTAA
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