mRNA_H-elongata_contig144698.3072.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144698.3072.1
Unique NamemRNA_H-elongata_contig144698.3072.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig144698.3072.1 vs. uniprot
Match: A0A7S2VCD5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VCD5_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 9.500e-24
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    4 LTWVSQVVGGVTPKKGGTTHLGQPVFNTVAEAKEAVNPDASVIYVPPPFAASAVLDAIE 180
            + + + +VGGVTPKKGGT HLG PVFNTVAEAKEAV PDASVIYVPPPFAA+A++DAIE
Sbjct:   50 IEYGTNMVGGVTPKKGGTEHLGLPVFNTVAEAKEAVQPDASVIYVPPPFAANAIIDAIE 108
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BLAST of mRNA_H-elongata_contig144698.3072.1 vs. uniprot
Match: D7FJ40_ECTSI (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ40_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.250e-22
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    4 LTWVSQVVGGVTPKKGGTTHLGQPVFNTVAEAKEAVNPDASVIYVPPPFAASAVLDAIE 180
            + + SQ VGGVTPKKGG THLG+PVFNTVAEAKE V PDASV+YVPPPFA +AVLDAIE
Sbjct:   53 IEYGSQYVGGVTPKKGGQTHLGKPVFNTVAEAKEGVKPDASVVYVPPPFAGAAVLDAIE 111
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BLAST of mRNA_H-elongata_contig144698.3072.1 vs. uniprot
Match: L1JR66_GUITC (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=3 Tax=Geminigeraceae TaxID=589343 RepID=L1JR66_GUITC)

HSP 1 Score: 94.0 bits (232), Expect = 9.120e-22
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 NLTWVSQVVGGVTPKKGGTTHLGQPVFNTVAEAKEAVNPDASVIYVPPPFAASAVLDAIE 180
            ++ + +++VGGVTPKKGGTTHLG PVFNTV EAKEAV PDASVIYVPPPFA  A LDAIE
Sbjct:   32 SIAYGTKMVGGVTPKKGGTTHLGLPVFNTVREAKEAVKPDASVIYVPPPFAMRAALDAIE 91
[Close]
BLAST of mRNA_H-elongata_contig144698.3072.1 vs. uniprot
Match: A0A662X9H2_9STRA (CoA_binding domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X9H2_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.200e-20
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    4 LTWVSQVVGGVTPKKGGTTHLGQPVFNTVAEAKEAVNPDASVIYVPPPFAASAVLDAIE 180
            + + + +VGGVTPKKGGTTHLG PVFNTVAEAK+    DASVIYVPPPF A+++++AIE
Sbjct:   52 IEYGTNMVGGVTPKKGGTTHLGLPVFNTVAEAKKETGADASVIYVPPPFCAASIIEAIE 110
[Close]
BLAST of mRNA_H-elongata_contig144698.3072.1 vs. uniprot
Match: A0A024GKK8_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=3 Tax=Albugo TaxID=65356 RepID=A0A024GKK8_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.660e-20
Identity = 42/59 (71.19%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    4 LTWVSQVVGGVTPKKGGTTHLGQPVFNTVAEAKEAVNPDASVIYVPPPFAASAVLDAIE 180
            +++ +++VGGVTPKKGG+THLG PVFNTV+EAK A N DASVIYVPPPF A A++DAIE
Sbjct:   54 ISYGTKMVGGVTPKKGGSTHLGLPVFNTVSEAKRATNADASVIYVPPPFCAQAIIDAIE 112
[Close]
BLAST of mRNA_H-elongata_contig144698.3072.1 vs. uniprot
Match: A0A7S4UK23_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UK23_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 6.860e-20
Identity = 43/59 (72.88%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    4 LTWVSQVVGGVTPKKGGTTHLGQPVFNTVAEAKEAVNPDASVIYVPPPFAASAVLDAIE 180
            + + + +VGGVTPKKGG THLG PVFNTVAEA E V PDASVIYVPPPF A A++DAIE
Sbjct:   59 IEYGTNMVGGVTPKKGGQTHLGLPVFNTVAEAVEGVQPDASVIYVPPPFCAGAIMDAIE 117
[Close]
BLAST of mRNA_H-elongata_contig144698.3072.1 vs. uniprot
Match: A0A6U3SMJ6_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SMJ6_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 7.370e-20
Identity = 43/59 (72.88%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    4 LTWVSQVVGGVTPKKGGTTHLGQPVFNTVAEAKEAVNPDASVIYVPPPFAASAVLDAIE 180
            + + + +VGGVTPKKGG THLG PVFNTVAEA E V PDASVIYVPPPF A A++DAIE
Sbjct:   59 IEYGTNMVGGVTPKKGGQTHLGLPVFNTVAEAVEGVQPDASVIYVPPPFCAGAIMDAIE 117
[Close]
BLAST of mRNA_H-elongata_contig144698.3072.1 vs. uniprot
Match: A0A7S2LEI1_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LEI1_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 7.370e-20
Identity = 43/59 (72.88%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    4 LTWVSQVVGGVTPKKGGTTHLGQPVFNTVAEAKEAVNPDASVIYVPPPFAASAVLDAIE 180
            + + +Q+VGGVTPKKGG  HLG PVFNTVAEA E V PDASVIYVPPPF A A++DAIE
Sbjct:   56 IAYGTQMVGGVTPKKGGQEHLGLPVFNTVAEAVEGVQPDASVIYVPPPFCAKAIMDAIE 114
[Close]
BLAST of mRNA_H-elongata_contig144698.3072.1 vs. uniprot
Match: A0A067BXC0_SAPPC (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BXC0_SAPPC)

HSP 1 Score: 88.6 bits (218), Expect = 1.230e-19
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    4 LTWVSQVVGGVTPKKGGTTHLGQPVFNTVAEAKEAVNPDASVIYVPPPFAASAVLDAIE 180
            + + + +VGGVTPKKGGTTHLG PVFNTVAEAK+    DASVIYVPPPF A+A++DAIE
Sbjct:   44 IAYGTNMVGGVTPKKGGTTHLGLPVFNTVAEAKKETQADASVIYVPPPFCAAAIIDAIE 102
[Close]
BLAST of mRNA_H-elongata_contig144698.3072.1 vs. uniprot
Match: A0A7S0WCJ8_9CRYP (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0WCJ8_9CRYP)

HSP 1 Score: 88.6 bits (218), Expect = 1.350e-19
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    4 LTWVSQVVGGVTPKKGGTTHLGQPVFNTVAEAKEAVNPDASVIYVPPPFAASAVLDAIE 180
            + + + +VGGVTPKKGGTTHLG PVFN + EAK AVNPDAS IYVPPPFA +A +DAIE
Sbjct:   50 IAYGTNMVGGVTPKKGGTTHLGLPVFNNMKEAKAAVNPDASAIYVPPPFAGAACIDAIE 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144698.3072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2VCD5_9STRA9.500e-2477.97Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
D7FJ40_ECTSI1.250e-2279.66Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
L1JR66_GUITC9.120e-2276.67Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A662X9H2_9STRA3.200e-2067.80CoA_binding domain-containing protein (Fragment) n... [more]
A0A024GKK8_9STRA3.660e-2071.19Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A7S4UK23_9STRA6.860e-2072.88Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A6U3SMJ6_9STRA7.370e-2072.88Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A7S2LEI1_9STRA7.370e-2072.88Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A067BXC0_SAPPC1.230e-1971.19Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A7S0WCJ8_9CRYP1.350e-1971.19Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144698contigH-elongata_contig144698:101..280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue4e-18
Seed eggNOG ortholog2880.D7FJ40
Preferred nameSCS-alpha
KEGG rclassRC00004,RC00014
KEGG koko:K01899
KEGG ReactionR00432,R00727
KEGG Pathwayko00020,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011
GOsGO:0003674,GO:0003824,GO:0004774,GO:0004775,GO:0004776,GO:0005488,GO:0005507,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006104,GO:0006105,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0010035,GO:0010038,GO:0015980,GO:0016874,GO:0016877,GO:0016878,GO:0016999,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0030312,GO:0031974,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046483,GO:0046686,GO:0046872,GO:0046914,GO:0050896,GO:0051186,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0071944,GO:0072350,GO:0072521,GO:1901135,GO:1901360,GO:1901564
EggNOG free text desc.succinate-CoA ligase (GDP-forming) activity
EggNOG OGsCOG0074@1,KOG1255@2759
EC6.2.1.4,6.2.1.5
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSuccinate--CoA ligase (GDP-forming), alpha subunit
Ec32 orthologEc-10_000030.1
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929859.2231696-CDS-H-elongata_contig144698:100..2801622929859.2231696-CDS-H-elongata_contig144698:100..280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144698 101..280 -
1691679186.0172698-CDS-H-elongata_contig144698:100..2801691679186.0172698-CDS-H-elongata_contig144698:100..280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144698 101..280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144698.3072.1prot_H-elongata_contig144698.3072.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144698 101..280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144698.3072.1

>prot_H-elongata_contig144698.3072.1 ID=prot_H-elongata_contig144698.3072.1|Name=mRNA_H-elongata_contig144698.3072.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
NLTWVSQVVGGVTPKKGGTTHLGQPVFNTVAEAKEAVNPDASVIYVPPPF
AASAVLDAIE
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mRNA from alignment at H-elongata_contig144698:101..280-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144698.3072.1 ID=mRNA_H-elongata_contig144698.3072.1|Name=mRNA_H-elongata_contig144698.3072.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig144698:101..280- (Himanthalia elongata Himel1 dioecious)
AACTTGACTTGGGTTTCTCAGGTGGTAGGAGGCGTAACTCCGAAGAAAGG
CGGCACTACCCATCTCGGACAGCCCGTGTTTAACACCGTGGCGGAGGCTA
AGGAGGCCGTCAATCCGGATGCGTCCGTGATATACGTGCCCCCGCCGTTC
GCCGCGTCTGCCGTGCTAGATGCCATCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig144698:101..280-

>mRNA_H-elongata_contig144698.3072.1 ID=mRNA_H-elongata_contig144698.3072.1|Name=mRNA_H-elongata_contig144698.3072.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig144698:101..280- (Himanthalia elongata Himel1 dioecious)
AACTTGACTTGGGTTTCTCAGGTGGTAGGAGGCGTAACTCCGAAGAAAGG
CGGCACTACCCATCTCGGACAGCCCGTGTTTAACACCGTGGCGGAGGCTA
AGGAGGCCGTCAATCCGGATGCGTCCGTGATATACGTGCCCCCGCCGTTC
GCCGCGTCTGCCGTGCTAGATGCCATCGAGAACTTGACTTGGGTTTCTCA
GGTGGTAGGAGGCGTAACTCCGAAGAAAGGCGGCACTACCCATCTCGGAC
AGCCCGTGTTTAACACCGTGGCGGAGGCTAAGGAGGCCGTCAATCCGGAT
GCGTCCGTGATATACGTGCCCCCGCCGTTCGCCGCGTCTGCCGTGCTAGA
TGCCATCGAG
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