mRNA_H-elongata_contig144655.3068.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144655.3068.1
Unique NamemRNA_H-elongata_contig144655.3068.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig144655.3068.1 vs. uniprot
Match: D8LAZ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ1_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 1.080e-48
Identity = 94/121 (77.69%), Postives = 102/121 (84.30%), Query Frame = 1 
Query:    1 ASVLDYGRMRFRERVNGGRLRSLVLETQLYIFARQCALNLELKKPAEVARMGGRFMPAYYHELIGQAEDQRD----EWGRDFDEEVTEGEASTTIPGALDPAEVELFALKSSWDVVKACDR 351
            ASVLDYG+MRFRER+NG  L SLVLETQLYIFARQCALNLELKKPAEVARMGGRFMPAYYHEL+GQA D ++      G DFDE  +EG  S++   ALDPAEVELFALKSSWDVVKACDR
Sbjct:  494 ASVLDYGQMRFRERLNGDGLHSLVLETQLYIFARQCALNLELKKPAEVARMGGRFMPAYYHELVGQAADLQEGGGXXXGGDFDEGASEGGKSSSST-ALDPAEVELFALKSSWDVVKACDR 613
[Close]
BLAST of mRNA_H-elongata_contig144655.3068.1 vs. uniprot
Match: A0A835YQQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQQ4_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.330e-16
Identity = 48/116 (41.38%), Postives = 65/116 (56.03%), Query Frame = 1 
Query:    4 SVLDYGRMRFRERVNGGRLRSLVLETQLYIFARQCALNLELKKPAEVARMGGRFMPAYYHELIGQAEDQRDEWGRDFDEEVTEGEASTTIPGALDPAEVELFALKSSWDVVKACDR 351
            SVLDY +M+ R+RV  G L S VL+TQLYIFARQC L L++ +P E+A+ G  F+ A++ EL+ +   +                           A VEL+ LK+ WDVVKAC R
Sbjct:  550 SVLDYRKMKLRQRVYPGSLFSFVLDTQLYIFARQCHLYLDMGRPDELAKCGIAFIRAFHQELLAKLYSET--------------------------ARVELWGLKACWDVVKACSR 639
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144655.3068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAZ1_ECTSI1.080e-4877.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YQQ4_9STRA6.330e-1641.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144655contigH-elongata_contig144655:203..1336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.0
Seed ortholog evalue3.1e-37
Seed eggNOG ortholog2880.D8LAZ1
KEGG koko:K20307,ko:K20476
EggNOG free text desc.early endosome to Golgi transport
EggNOG OGsKOG1931@1,KOG1931@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size351
Cds size327
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144655.3068.1prot_H-elongata_contig144655.3068.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144655 203..1312 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929858.5753493-CDS-H-elongata_contig144655:202..4041622929858.5753493-CDS-H-elongata_contig144655:202..404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144655 203..404 -
1691679185.912792-CDS-H-elongata_contig144655:202..4041691679185.912792-CDS-H-elongata_contig144655:202..404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144655 203..404 -
1622929858.587591-CDS-H-elongata_contig144655:1187..13121622929858.587591-CDS-H-elongata_contig144655:1187..1312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144655 1188..1312 -
1691679185.923093-CDS-H-elongata_contig144655:1187..13121691679185.923093-CDS-H-elongata_contig144655:1187..1312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144655 1188..1312 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929858.6035736-UTR-H-elongata_contig144655:1312..13361622929858.6035736-UTR-H-elongata_contig144655:1312..1336Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144655 1313..1336 -
1691679185.9309757-UTR-H-elongata_contig144655:1312..13361691679185.9309757-UTR-H-elongata_contig144655:1312..1336Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144655 1313..1336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144655.3068.1

>prot_H-elongata_contig144655.3068.1 ID=prot_H-elongata_contig144655.3068.1|Name=mRNA_H-elongata_contig144655.3068.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
MRFRERVNGGRLRSLVLETQLYIFARQCALNLELKKPAEVARMGGRFMPA
YYHELIGQAEDQRDEWGRDFDEEVTEGEASTTIPGALDPAEVELFALKSS
WDVVKACDR
back to top

mRNA from alignment at H-elongata_contig144655:203..1336-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144655.3068.1 ID=mRNA_H-elongata_contig144655.3068.1|Name=mRNA_H-elongata_contig144655.3068.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1134bp|location=Sequence derived from alignment at H-elongata_contig144655:203..1336- (Himanthalia elongata Himel1 dioecious)
GCCTCCGTTCTGGACTACGGCCGCATGCGCTTCCGGGAGAGGGTGAACGG
GGGCCGACTGCGGAGCCTAGTGCTGGAGACTCAGTTGTACATCTTTGCCA
GGCAGTGTGCCCTCAATCTGGAGCTCAAGAAACCCGCGGAGGTGGCCAGG
TGCATAAGAGAGAGGGGGGAGGCGTTTCTTGAGGAAGGGTTATGGGATGT
GTTTGGTTTTCGGTGATGCAAGAGCTCGGCGTGTGTGAATGTTGTATTCG
CGCCTACATACATTTTTTGTATTTTTTTGCCTTACTGACCTTGAGCTTTG
AAAAGAAGGAGATTTAAGGGCGTGAAGTTTTATTCTCGCAAAGGGCTAAA
CTGGTCGGAGCCGATTGAAGTTTTGGGGAGGCTTTTTACTGTTTTTTTTT
TGTTTTTTGTTTTTTGTTTTTTTGCCCGCATTGAAAAAAAGAGAACATGA
TGTTTCGTTTTGTTAGGGGAACGGGGGACGGGGCATAGACCAGGTTATAT
CCCCCCCCCCAAAAATTGATTCGGTCCGATCACAGGGTTTTGTAGAGGGA
TGCTGGCTGGGGTGCAAGCTGCTCGCCTGTCTTTTCAGAGGCAGAAGGAT
ACGTGGGCGGTGGGCGGAGGGCGATTGCTACACAGCCAGCACGTCATGTC
ATGCCGTTTTCAATCTGTGGAAACGAGGACATTTTCGCATTTTGTTTTAT
TACGATGCTTCACAATTGATATTTATGTGCGTTGCGTCTCCCCCCCCCCT
CTCCCTCCTTTCTATCCTGGCACCCAAATCAATGCGGAACAATGGCGTCC
TGCACCCATATTCCCGCCGCGCCGCTCGGCCCTGATGAACGTCATCCCGT
GCCGTCATTCCGTGCATCTCTTGACTTGTTTCTCGTTTTGGTTTTGTGAT
CCACTCGGTGCTGCTTCATGCCGTCCAATCAGAATGGGGGGACGCTTCAT
GCCGGCGTACTACCACGAGCTGATTGGCCAGGCTGAGGACCAACGAGATG
AGTGGGGGAGGGATTTTGACGAAGAAGTCACGGAAGGGGAAGCCTCGACG
ACCATCCCCGGAGCGCTTGATCCCGCCGAGGTGGAGCTGTTCGCGCTTAA
GTCTTCGTGGGACGTGGTGAAGGCGTGTGACAGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig144655:203..1336-

>mRNA_H-elongata_contig144655.3068.1 ID=mRNA_H-elongata_contig144655.3068.1|Name=mRNA_H-elongata_contig144655.3068.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig144655:203..1336- (Himanthalia elongata Himel1 dioecious)
ATGCGCTTCCGGGAGAGGGTGAACGGGGGCCGACTGCGGAGCCTAGTGCT
GGAGACTCAGTTGTACATCTTTGCCAGGCAGTGTGCCCTCAATCTGGAGC
TCAAGAAACCCGCGGAGGTGGCCAGATGCGCTTCCGGGAGAGGGTGAACG
GGGGCCGACTGCGGAGCCTAGTGCTGGAGACTCAGTTGTACATCTTTGCC
AGGCAGTGTGCCCTCAATCTGGAGCTCAAGAAACCCGCGGAGGTGGCCAG
AATGGGGGGACGCTTCATGCCGGCGTACTACCACGAGCTGATTGGCCAGG
CTGAGGACCAACGAGATGAGTGGGGGAGGGATTTTGACGAAGAAGTCACG
GAAGGGGAAGCCTCGACGACCATCCCCGGAGCGCTTGATCCCGCCGAGGT
GGAGCTGTTCGCGCTTAAGTCTTCGTGGGACGTGGTGAAGGCGTGTGACA
GGAATGGGGGGACGCTTCATGCCGGCGTACTACCACGAGCTGATTGGCCA
GGCTGAGGACCAACGAGATGAGTGGGGGAGGGATTTTGACGAAGAAGTCA
CGGAAGGGGAAGCCTCGACGACCATCCCCGGAGCGCTTGATCCCGCCGAG
GTGGAGCTGTTCGCGCTTAAGTCTTCGTGGGACGTGGTGAAGGCGTGTGA
CAGG
back to top