mRNA_H-elongata_contig144628.3064.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144628.3064.1
Unique NamemRNA_H-elongata_contig144628.3064.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig144628.3064.1 vs. uniprot
Match: D8LDF8_ECTSI (Elongation of fatty acids protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF8_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 2.660e-7
Identity = 37/102 (36.27%), Postives = 51/102 (50.00%), Query Frame = 1 
Query:    1 TYFAVFRSRGRQVTFFHLFHHCSITVIVGSVLPF---GEMLYEGVCGLAVSTIGWIDHRPTSQRPRRAMWINGNIRLLVVK-TWTRADLSHLFYVSPSCSRP 294
            T+  + R   RQVTFFHLFHHCSITVIVGS+LPF   G+M    +    V  + ++ H   S   + + W     +L + +        +  FY  P C  P
Sbjct:  160 TFLFLLRRSFRQVTFFHLFHHCSITVIVGSILPFDFNGDMYLPIMLNSIVHVLVYL-HYVLSALGKHSWWSRHLTKLQLTQFAVILVQSATAFYRGPDCGSP 260
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BLAST of mRNA_H-elongata_contig144628.3064.1 vs. uniprot
Match: W7TVB6_9STRA (Elongation of fatty acids protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVB6_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.900e-7
Identity = 43/128 (33.59%), Postives = 63/128 (49.22%), Query Frame = 1 
Query:    1 TYFAVFRSRGRQVTFFHLFHHCSITVIVGSVLPF---GEM----LYEGVCGLAVSTIGWIDHRPTSQRPRRAMWINGNIRLLVVKTWTRADLSHL--FYVSPSCSRPTCMPCMAEKDGGVVITVFNNW 357
            TYF + R   RQVTF HLFHH SITVIVGS++PF   G+M    L   +C +AV    ++ +  T        W + ++  L V  +    L  L  FY  P C  P     +     G ++ +F+++
Sbjct:  172 TYFFILRRSFRQVTFLHLFHHTSITVIVGSLMPFDFGGDMYFPILVNSLCHVAV----YLHYFCTCLGLNP--WWSAHLATLQVAQFAAIFLQSLLAFYEGPRCGSPDFSKILMMVYTGSMLVLFSDF 293
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144628.3064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDF8_ECTSI2.660e-736.27Elongation of fatty acids protein n=2 Tax=Ectocarp... [more]
W7TVB6_9STRA4.900e-733.59Elongation of fatty acids protein n=1 Tax=Nannochl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144628contigH-elongata_contig144628:1185..1605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size421
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144628.3064.1prot_H-elongata_contig144628.3064.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144628 1293..1595 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929858.2570295-UTR-H-elongata_contig144628:1184..12921622929858.2570295-UTR-H-elongata_contig144628:1184..1292Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144628 1185..1292 +
1691679185.7960355-UTR-H-elongata_contig144628:1184..12921691679185.7960355-UTR-H-elongata_contig144628:1184..1292Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144628 1185..1292 +
1622929858.288679-UTR-H-elongata_contig144628:1595..16051622929858.288679-UTR-H-elongata_contig144628:1595..1605Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144628 1596..1605 +
1691679185.8136568-UTR-H-elongata_contig144628:1595..16051691679185.8136568-UTR-H-elongata_contig144628:1595..1605Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144628 1596..1605 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929858.2732778-CDS-H-elongata_contig144628:1292..15951622929858.2732778-CDS-H-elongata_contig144628:1292..1595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144628 1293..1595 +
1691679185.8052275-CDS-H-elongata_contig144628:1292..15951691679185.8052275-CDS-H-elongata_contig144628:1292..1595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144628 1293..1595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144628.3064.1

>prot_H-elongata_contig144628.3064.1 ID=prot_H-elongata_contig144628.3064.1|Name=mRNA_H-elongata_contig144628.3064.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MLYEGVCGLAVSTIGWIDHRPTSQRPRRAMWINGNIRLLVVKTWTRADLS
HLFYVSPSCSRPTCMPCMAEKDGGVVITVFNNWSMGLLYLNRLHPLLKLP
*
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mRNA from alignment at H-elongata_contig144628:1185..1605+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144628.3064.1 ID=mRNA_H-elongata_contig144628.3064.1|Name=mRNA_H-elongata_contig144628.3064.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=421bp|location=Sequence derived from alignment at H-elongata_contig144628:1185..1605+ (Himanthalia elongata Himel1 dioecious)
ACTTATTTTGCGGTTTTTCGCTCTCGTGGCCGACAGGTGACGTTCTTCCA
TCTTTTCCACCACTGTTCCATCACCGTCATAGTCGGCTCCGTGCTGCCGT
TTGGTGAGATGTTATATGAGGGTGTGTGCGGATTGGCGGTTTCAACCATA
GGATGGATTGATCATCGACCGACGTCTCAGCGTCCCAGGCGTGCTATGTG
GATCAATGGAAACATACGTCTGTTAGTTGTCAAAACGTGGACGAGAGCAG
ATCTATCGCATCTCTTTTACGTCTCGCCTTCTTGCTCGCGCCCCACATGT
ATGCCCTGTATGGCGGAAAAGGATGGGGGGGTAGTAATTACGGTATTCAA
TAATTGGTCAATGGGGTTACTGTACCTGAATAGGCTACACCCGTTACTCA
AGCTACCTTGAGGACTGCTGG
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Coding sequence (CDS) from alignment at H-elongata_contig144628:1185..1605+

>mRNA_H-elongata_contig144628.3064.1 ID=mRNA_H-elongata_contig144628.3064.1|Name=mRNA_H-elongata_contig144628.3064.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig144628:1185..1605+ (Himanthalia elongata Himel1 dioecious)
ATGTTATATGAGGGTGTGTGCGGATTGGCGGTTTCAACCATAGGATGGAT
TGATCATCGACCGACGTCTCAGCGTCCCAGGCGTGCTATGTGGATCAATG
GAAACATACGTCTGTTAGTTGTCAAAACGTGGACGAGAGCAGATCTATCG
CATCTCTTTTACGTCTCGCCTTCTTGCTCGCGCCCCACATGTATGCCCTG
TATGGCGGAAAAGGATGGGGGGGTAGTAATTACGGTATTCAATAATTGGT
CAATGGGGTTACTGTACCTGAATAGGCTACACCCGTTACTCAAGCTACCT
TGAATGTTATATGAGGGTGTGTGCGGATTGGCGGTTTCAACCATAGGATG
GATTGATCATCGACCGACGTCTCAGCGTCCCAGGCGTGCTATGTGGATCA
ATGGAAACATACGTCTGTTAGTTGTCAAAACGTGGACGAGAGCAGATCTA
TCGCATCTCTTTTACGTCTCGCCTTCTTGCTCGCGCCCCACATGTATGCC
CTGTATGGCGGAAAAGGATGGGGGGGTAGTAATTACGGTATTCAATAATT
GGTCAATGGGGTTACTGTACCTGAATAGGCTACACCCGTTACTCAAGCTA
CCTTGA
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