mRNA_H-elongata_contig14462.3063.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14462.3063.1
Unique NamemRNA_H-elongata_contig14462.3063.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14462.3063.1 vs. uniprot
Match: D7G862_ECTSI (Pc13g00620 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G862_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 8.430e-94
Identity = 182/344 (52.91%), Postives = 238/344 (69.19%), Query Frame = 1 
Query:    7 GAKDLQTAEAAKTAQRLGEALALEGDRQRSVDFFALAVGALESLFGPGSVETIESRTDLGLALLRQGKAREASSTLDEAMWARVATQRIEG---SAGGMSRNLGGLVEALIRRGPEGDEAMELEGALAAVEKINLLAWRYFTQHWPFEGQTVMQQMIDAIEADEGGGAYSPASQDLVASAYLYNLGFLRLAVLGEYKSAAELLLRAQALRAPILGNVHSLTVQAVVSRGHALTLTGYTILAVKELTSTADALLEAGQAAAAERLARQALRAGYDPLGTHTYTHACFTQHVNMLKGWGNEARQARSNDFQTKQIAIARKAQLGIRDRGMGTASKTLGKALLAQID 1029
            G++ L +  AA TAQRLGEALALEGD +R+   F  AV A E+LFG  S + +   T LGLAL RQG+  +A+STL  A+    A +  EG   S   +++ L GL ++LIRR PEG E+ EL GAL AV+ IN LA RYF Q  P +G++V+Q +   +E ++ G +   A +DLV SA L+NLGFLRLAVLGE+ SAA +L +A  LR  +LG  HSLT+QAVVSRG ALTLTG T+LAV+ELTS A+ALL AGQ  AA+RL RQ L+ GYDPLG  TY HAC+TQH NML+ WG+E   A+++ F   Q+ IA+KA+L  ++R M  A++TL  A+ AQI+
Sbjct:  106 GSEKLNSEAAALTAQRLGEALALEGDHERAASVFGRAVVASEALFGVKSTQAVACLTGLGLALFRQGQLSDAASTLGRALSVH-ALRPDEGMVTSTQDVTKTLDGLAKSLIRRPPEGGES-ELGGALLAVDHINPLAGRYFVQKLPHQGESVLQSLY--VEKEDAGSSEPSALRDLVISALLFNLGFLRLAVLGEFSSAASVLQQAIELRKAVLGEAHSLTMQAVVSRGWALTLTGDTLLAVEELTSAAEALLSAGQPHAADRLLRQGLQQGYDPLGGATYAHACYTQHSNMLRAWGSEGI-AKADAFCLNQLNIAKKARLTGKERPMKRATRTLAVAVRAQIE 444
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BLAST of mRNA_H-elongata_contig14462.3063.1 vs. uniprot
Match: A0A6H5JZA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZA8_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.660e-19
Identity = 50/95 (52.63%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:  745 DALLEAGQAAAAERLARQALRAGYDPLGTHTYTHACFTQHVNMLKGWGNEARQARSNDFQTKQIAIARKAQLGIRDRGMGTASKTLGKALLAQID 1029
            DALL AGQ  AA+RL RQ L+ GYDPLG  TY HAC+TQH  ML+ WG+E   A+++ F   Q+ IA+KA+L  ++R M  A++TL  A+ AQI+
Sbjct:   17 DALLSAGQPHAADRLLRQGLQQGYDPLGGATYAHACYTQHSTMLRAWGSEGI-AKADAFCLNQLDIAKKARLTGKERPMKRATRTLAVAVRAQIE 110
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BLAST of mRNA_H-elongata_contig14462.3063.1 vs. uniprot
Match: A0A6H5JX93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX93_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.730e-7
Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:    7 GAKDLQTAEAAKTAQRLGEALALEGDRQRSVDFFALAVGALESLFGPGSVETIESRTDLGLALLRQ 204
            G++ L +  AA TAQRLGEALALEGD +R+   F  AV A E+LFG  S + +   T LGLAL +Q
Sbjct:  106 GSEKLNSEAAALTAQRLGEALALEGDHERAASVFGRAVVASEALFGVKSTQAVACLTGLGLALFQQ 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14462.3063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G862_ECTSI8.430e-9452.91Pc13g00620 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JZA8_9PHAE1.660e-1952.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX93_9PHAE1.730e-753.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14462contigH-elongata_contig14462:5253..7639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1038
Cds size1038
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14462.3063.1prot_H-elongata_contig14462.3063.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14462 5253..7639 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929858.1135104-CDS-H-elongata_contig14462:5252..53811622929858.1135104-CDS-H-elongata_contig14462:5252..5381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14462 5253..5381 -
1691679185.7396877-CDS-H-elongata_contig14462:5252..53811691679185.7396877-CDS-H-elongata_contig14462:5252..5381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14462 5253..5381 -
1622929858.129147-CDS-H-elongata_contig14462:5882..60541622929858.129147-CDS-H-elongata_contig14462:5882..6054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14462 5883..6054 -
1691679185.7498128-CDS-H-elongata_contig14462:5882..60541691679185.7498128-CDS-H-elongata_contig14462:5882..6054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14462 5883..6054 -
1622929858.1405816-CDS-H-elongata_contig14462:6358..66331622929858.1405816-CDS-H-elongata_contig14462:6358..6633Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14462 6359..6633 -
1691679185.7578342-CDS-H-elongata_contig14462:6358..66331691679185.7578342-CDS-H-elongata_contig14462:6358..6633Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14462 6359..6633 -
1622929858.1582055-CDS-H-elongata_contig14462:6898..71561622929858.1582055-CDS-H-elongata_contig14462:6898..7156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14462 6899..7156 -
1691679185.7675283-CDS-H-elongata_contig14462:6898..71561691679185.7675283-CDS-H-elongata_contig14462:6898..7156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14462 6899..7156 -
1622929858.17586-CDS-H-elongata_contig14462:7435..76391622929858.17586-CDS-H-elongata_contig14462:7435..7639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14462 7436..7639 -
1691679185.7806022-CDS-H-elongata_contig14462:7435..76391691679185.7806022-CDS-H-elongata_contig14462:7435..7639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14462 7436..7639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14462.3063.1

>prot_H-elongata_contig14462.3063.1 ID=prot_H-elongata_contig14462.3063.1|Name=mRNA_H-elongata_contig14462.3063.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=346bp
QSGAKDLQTAEAAKTAQRLGEALALEGDRQRSVDFFALAVGALESLFGPG
SVETIESRTDLGLALLRQGKAREASSTLDEAMWARVATQRIEGSAGGMSR
NLGGLVEALIRRGPEGDEAMELEGALAAVEKINLLAWRYFTQHWPFEGQT
VMQQMIDAIEADEGGGAYSPASQDLVASAYLYNLGFLRLAVLGEYKSAAE
LLLRAQALRAPILGNVHSLTVQAVVSRGHALTLTGYTILAVKELTSTADA
LLEAGQAAAAERLARQALRAGYDPLGTHTYTHACFTQHVNMLKGWGNEAR
QARSNDFQTKQIAIARKAQLGIRDRGMGTASKTLGKALLAQIDVS*
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mRNA from alignment at H-elongata_contig14462:5253..7639-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14462.3063.1 ID=mRNA_H-elongata_contig14462.3063.1|Name=mRNA_H-elongata_contig14462.3063.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2387bp|location=Sequence derived from alignment at H-elongata_contig14462:5253..7639- (Himanthalia elongata Himel1 dioecious)
CAGTCTGGCGCGAAGGACCTCCAGACCGCCGAAGCAGCAAAAACCGCTCA
GCGTCTGGGAGAAGCGCTTGCCCTCGAGGGCGACCGCCAGCGCTCCGTGG
ATTTTTTTGCGCTGGCGGTGGGTGCTCTTGAGTCTTTGTTCGGTCCAGGA
AGCGTGGAGACTATCGAGAGCAGGACGGACCTCGGCCTCGCGCTACTCCG
CCAGGTGATGGATGTGCCCGTGCGCTGAAGACGTTGATAGAGATGTGCAG
GTCCTATTATACTCTACTCTTAATTTATTAGACCGTCTTCTCAATATAGT
ATAATTCATATGTCTAGTCTAGTCTAGTGGTGTGGTGTCGGCAAGTTCCT
GTGGCCACTCGCCACCGTCGCTGCCGAAAAATAGCGCGCCCCTTAAATGT
TCTGTGTCTGTCTCACATCCGCCCCGTAACGTGCTGACCTCCGACGGCAT
CGGGCATCACGCGGCGTACCGCGCACGCATCAGGGAAAAGCACGGGAGGC
CTCGTCGACCCTCGATGAGGCGATGTGGGCACGTGTGGCCACACAGCGGA
TCGAGGGTTCCGCTGGGGGCATGTCGCGAAATTTAGGGGGCTTGGTGGAG
GCGTTGATACGGCGAGGTCCGGAAGGAGACGAAGCGATGGAACTTGAAGG
GGCGCTTGCGGCGGTGGAGAAGATCAACCTCCTGGCGTGGCGTTACTTCA
CGCAGCATTGGCCGTTCGAAGGGCAGACGGTGATGCAGCAGGTATGTTCG
TCATCGACAGCCGCTGGGTTAGCCCCGGAATGCACGCAGGCTTCCGGAGT
AGAGTACATTAGCAAGCGCGTGGCCCCTTGACGAAATAGCGGTGAATGAT
AGGGATTAATGAAGCACGCGTGTCGCTCTCGGGGGCAGGGCGGGGCGGAT
CCTCTTACACCAAGCATTTCCACACATTCCAGTGAATGAGCGGTTGCTGC
CGCTGCCGTTGTCAACTTGTCCAACGTATCCACCGTTACCTACAACCCCT
AACAAGATGATCGATGCTATTGAAGCCGACGAGGGCGGAGGGGCGTATTC
TCCCGCCTCGCAAGATCTCGTCGCCTCGGCGTATCTGTACAACCTCGGCT
TTCTGCGCCTGGCGGTGCTGGGGGAGTACAAGTCGGCGGCCGAATTGCTG
CTGCGAGCGCAAGCGCTCCGGGCGCCGATCCTCGGGAACGTCCACTCCCT
AACGGTACAGGCGGTCGTGAGCCGGGGGCATGCCCTGACGCTCACGGGAT
ACACAATCTTAGCGGTAAAAGAGCTTACCAGGTACGCGCGGCGTCGGAAG
GAGGAGAAAGCGTGTTTTTGAAGTGAAACGAGATCTGCTGTGCATGGATT
AAGTCGCAGCAACACCCACGACAACCCCCGAGCACCATCAGTAACAACTG
AGTCTCAAGGAAAGGGGTAGAGGATGCTGTTAGGAGGGTCATCACGTGAG
CGACGTGGTGTGGCGTGACGTCGCGATACGCCTAAGGTTTTCATGGTGGA
TTTTGTGGCTCCCTAATACCTTCGCTTATTCCAAACAAACATTTGCATAT
TTCGCTCTGGTGCCTTCCTTCCCCCCCTTTCTTAGCACGGCAGACGCCCT
CCTTGAGGCAGGGCAGGCGGCCGCGGCGGAGAGACTTGCTCGCCAGGCGC
TAAGAGCGGGCTACGATCCTCTGGGCACCCACACCTACACCCACGCCTGT
TTCACGCAGCACGTGAACATGCTCAAGGGGTGGGGAAACGAGGCAAGGCA
GGCCAGAGTCGTCTGCGCGTTTCTCGAAGGACAGGCCCCGTTCGTTGTTT
GGCACCATTAGTTTCTCGAGCGTCCAGATTTGTTGTTTAAAACAAATATG
TAGTGACCTCGGTGGTGAGATCCTGACGCCTCGGTCTGTAGCCCATTTGA
AGGTGCCGGGCTCGGTGTGAAACGCTCCGGCAGGCGCTTCATCGTGTGCC
ACGACAGCGCGGTGATTTACGAGTGGTGATAATGCGCCGTTCGGGTGGTA
TAAGGTCTATAGCATAGCATCACAGAGAAGAATACGGAAAAAAACTGTTT
TGGCTTAGCGATGGCACGGAAGTGCCCCGGAGAAAGGCAAACCTGGCACC
GTGACGTGCGGTACCCGCACTTGTTCGTGTAATACCCACATCGCTGGGCT
GTCGTCACCTTAGCTTAGCTCGGAGATCACACAACTGATCGCAACGCTAA
TCTGAACAAATGTATATTGGTGGCTTATCCTACCCGCTCTTCGCAGGGCG
AACAAAAGTCCAACGACTTTCAGACGAAGCAGATAGCAATCGCGAGGAAA
GCTCAGCTCGGTATCAGGGACCGAGGAATGGGCACTGCGAGCAAGACCCT
CGGCAAGGCTCTATTGGCTCAGATTGATGTGAGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig14462:5253..7639-

>mRNA_H-elongata_contig14462.3063.1 ID=mRNA_H-elongata_contig14462.3063.1|Name=mRNA_H-elongata_contig14462.3063.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2076bp|location=Sequence derived from alignment at H-elongata_contig14462:5253..7639- (Himanthalia elongata Himel1 dioecious)
CAGTCTGGCGCGAAGGACCTCCAGACCGCCGAAGCAGCAAAAACCGCTCA
GCGTCTGGGAGAAGCGCTTGCCCTCGAGGGCGACCGCCAGCGCTCCGTGG
ATTTTTTTGCGCTGGCGGTGGGTGCTCTTGAGTCTTTGTTCGGTCCAGGA
AGCGTGGAGACTATCGAGAGCAGGACGGACCTCGGCCTCGCGCTACTCCG
CCAGCAGTCTGGCGCGAAGGACCTCCAGACCGCCGAAGCAGCAAAAACCG
CTCAGCGTCTGGGAGAAGCGCTTGCCCTCGAGGGCGACCGCCAGCGCTCC
GTGGATTTTTTTGCGCTGGCGGTGGGTGCTCTTGAGTCTTTGTTCGGTCC
AGGAAGCGTGGAGACTATCGAGAGCAGGACGGACCTCGGCCTCGCGCTAC
TCCGCCAGGGAAAAGCACGGGAGGCCTCGTCGACCCTCGATGAGGCGATG
TGGGCACGTGTGGCCACACAGCGGATCGAGGGTTCCGCTGGGGGCATGTC
GCGAAATTTAGGGGGCTTGGTGGAGGCGTTGATACGGCGAGGTCCGGAAG
GAGACGAAGCGATGGAACTTGAAGGGGCGCTTGCGGCGGTGGAGAAGATC
AACCTCCTGGCGTGGCGTTACTTCACGCAGCATTGGCCGTTCGAAGGGCA
GACGGTGATGCAGCAGGGAAAAGCACGGGAGGCCTCGTCGACCCTCGATG
AGGCGATGTGGGCACGTGTGGCCACACAGCGGATCGAGGGTTCCGCTGGG
GGCATGTCGCGAAATTTAGGGGGCTTGGTGGAGGCGTTGATACGGCGAGG
TCCGGAAGGAGACGAAGCGATGGAACTTGAAGGGGCGCTTGCGGCGGTGG
AGAAGATCAACCTCCTGGCGTGGCGTTACTTCACGCAGCATTGGCCGTTC
GAAGGGCAGACGGTGATGCAGCAGATGATCGATGCTATTGAAGCCGACGA
GGGCGGAGGGGCGTATTCTCCCGCCTCGCAAGATCTCGTCGCCTCGGCGT
ATCTGTACAACCTCGGCTTTCTGCGCCTGGCGGTGCTGGGGGAGTACAAG
TCGGCGGCCGAATTGCTGCTGCGAGCGCAAGCGCTCCGGGCGCCGATCCT
CGGGAACGTCCACTCCCTAACGGTACAGGCGGTCGTGAGCCGGGGGCATG
CCCTGACGCTCACGGGATACACAATCTTAGCGGTAAAAGAGCTTACCAGA
TGATCGATGCTATTGAAGCCGACGAGGGCGGAGGGGCGTATTCTCCCGCC
TCGCAAGATCTCGTCGCCTCGGCGTATCTGTACAACCTCGGCTTTCTGCG
CCTGGCGGTGCTGGGGGAGTACAAGTCGGCGGCCGAATTGCTGCTGCGAG
CGCAAGCGCTCCGGGCGCCGATCCTCGGGAACGTCCACTCCCTAACGGTA
CAGGCGGTCGTGAGCCGGGGGCATGCCCTGACGCTCACGGGATACACAAT
CTTAGCGGTAAAAGAGCTTACCAGCACGGCAGACGCCCTCCTTGAGGCAG
GGCAGGCGGCCGCGGCGGAGAGACTTGCTCGCCAGGCGCTAAGAGCGGGC
TACGATCCTCTGGGCACCCACACCTACACCCACGCCTGTTTCACGCAGCA
CGTGAACATGCTCAAGGGGTGGGGAAACGAGGCAAGGCAGGCCAGACACG
GCAGACGCCCTCCTTGAGGCAGGGCAGGCGGCCGCGGCGGAGAGACTTGC
TCGCCAGGCGCTAAGAGCGGGCTACGATCCTCTGGGCACCCACACCTACA
CCCACGCCTGTTTCACGCAGCACGTGAACATGCTCAAGGGGTGGGGAAAC
GAGGCAAGGCAGGCCAGATCCAACGACTTTCAGACGAAGCAGATAGCAAT
CGCGAGGAAAGCTCAGCTCGGTATCAGGGACCGAGGAATGGGCACTGCGA
GCAAGACCCTCGGCAAGGCTCTATTGGCTCAGATTGATGTGAGCTGATCC
AACGACTTTCAGACGAAGCAGATAGCAATCGCGAGGAAAGCTCAGCTCGG
TATCAGGGACCGAGGAATGGGCACTGCGAGCAAGACCCTCGGCAAGGCTC
TATTGGCTCAGATTGATGTGAGCTGA
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