mRNA_H-elongata_contig144584.3059.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144584.3059.1
Unique NamemRNA_H-elongata_contig144584.3059.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig144584.3059.1 vs. uniprot
Match: A0A6H5JKV5_9PHAE (PX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKV5_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 1.160e-65
Identity = 117/142 (82.39%), Postives = 121/142 (85.21%), Query Frame = 1 
Query:    1 QADDAGLADTKDKEKAERPPVRPQHVLRWFGEVATHVKTQVDK-------------AKKDEALAKSPADLKFEEMQQYAYNLDTQMQNVARHTTALVKKQENLGATMFQFGVAFTLLANAEEDKAPLGQALLQLAHAADEVS 387
            QADDAGLADTKDKEKAER PV P HVLRWFGEVATHVKTQVDK             AKK+E  AK+PADLKFEEMQQYA NLD QMQNVARHTTALVKKQE LG+TMF+FGVAFTLLANAEEDKAPLGQALLQLAHAADEVS
Sbjct:  139 QADDAGLADTKDKEKAERVPVGPHHVLRWFGEVATHVKTQVDKVGLVNSLAPCGLAAKKEETSAKTPADLKFEEMQQYANNLDVQMQNVARHTTALVKKQEQLGSTMFEFGVAFTLLANAEEDKAPLGQALLQLAHAADEVS 280
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BLAST of mRNA_H-elongata_contig144584.3059.1 vs. uniprot
Match: A0A835Z9B1_9STRA (Sorting nexin 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B1_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 9.690e-19
Identity = 62/134 (46.27%), Postives = 76/134 (56.72%), Query Frame = 1 
Query:    1 QADDAGLADTKDKEKAERPPVRP---QHVLRWFGEVATHVKTQV--DKAKKDEALAKSPADLKFEEMQQYAYNLDTQMQNVARHTTALVKKQENLGATMFQFGVAFTLLANAEEDKAPLGQALLQLAHAADEVS 387
            QADDA +AD K++ K  R   +      + R +G   T VK+Q+  D+A    A  KS ADLKF+ +  Y   LDTQ+Q VARH +ALVKKQE LG T +  G A T L NAE D  PLGQ L      AD  S
Sbjct:  109 QADDAAMADKKEEAKVARKEDKGGPGAELKRHWGWAVTMVKSQMGLDQA----AEGKSEADLKFDAIGAYVNELDTQVQVVARHASALVKKQEGLGTTAYDLGFALTQLGNAERDTPPLGQVLQSAGEKADAAS 238
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BLAST of mRNA_H-elongata_contig144584.3059.1 vs. uniprot
Match: A0A7S2FTK2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FTK2_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 5.240e-11
Identity = 47/130 (36.15%), Postives = 70/130 (53.85%), Query Frame = 1 
Query:    1 QADDAGLADTKDKEKAERPPVRPQHVLRWFGEVATH-VKTQVDKAKKDEALAKSPADLKFEEMQQYAYNLDTQMQNVARHTTALVKKQENLGATMFQFGVAFTLLANAEEDKAPLGQALLQLAHAADEVS 387
            QADD  L+    K K +           W+  + +  + T+ ++AK       S  D++F+E+  Y  NL+ QMQ+VA+HT ALVK+   L   +F FG+AFTLL   E +   L  AL Q+ H AD++S
Sbjct:  161 QADDERLS----KAKGDTAAAASSRSKGWYSSITSMALSTKAEQAK-------SAQDMQFDEITGYVANLEAQMQSVAKHTAALVKRGRELSRGLFDFGLAFTLLGQHETEA--LVSALTQMGHTADQLS 277
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BLAST of mRNA_H-elongata_contig144584.3059.1 vs. uniprot
Match: A0A7S2CHT8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CHT8_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 5.900e-11
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:  154 KSPADLKFEEMQQYAYNLDTQMQNVARHTTALVKKQENLGATMFQFGVAFTLLANAEEDKAPLGQALLQLAHAADEVS 387
            KS  D+ F+E+  Y  NL+ QMQNVA+HT A+VK+   L   +F+FG+AFTLL   E +   L  AL Q+ H AD++S
Sbjct:  170 KSDQDITFDEIATYVQNLEAQMQNVAKHTAAIVKRGRELAQGLFEFGLAFTLLGQHETEA--LVTALTQMGHTADQLS 245
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BLAST of mRNA_H-elongata_contig144584.3059.1 vs. uniprot
Match: A0A7R9UCE3_9STRA (Hypothetical protein n=3 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCE3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 9.940e-10
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:  157 SPADLKFEEMQQYAYNLDTQMQNVARHTTALVKKQENLGATMFQFGVAFTLLANAEEDKAPLGQALLQLAHAADEVS 387
            +P DL+FEE+  Y  NL+ QM +VA H  AL ++   LG  +F FG+AFTLL NAE  +  +G+AL  +   AD++S
Sbjct:  166 TPEDLRFEELTTYIKNLEVQMDSVATHARALKERNAALGKGLFDFGLAFTLLGNAETSE--IGEALASMGKVADKLS 240
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BLAST of mRNA_H-elongata_contig144584.3059.1 vs. uniprot
Match: A0A7S2WCE5_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WCE5_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.470e-9
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:  148 LAKSPADLKFEEMQQYAYNLDTQMQNVARHTTALVKKQENLGATMFQFGVAFTLLANAEEDKAPLGQALLQLAHAADEVS 387
            L K+  D+KF+E + Y  +L+ Q+ NV +HT  LV+K +++   +F FG+AFTLL  AE D   LG A+ QL   AD++S
Sbjct:  154 LPKTEEDVKFDEARMYIDSLEPQINNVHKHTHTLVEKGKDMAQALFDFGLAFTLLGQAEADA--LGDAMAQLGQCADKLS 231
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BLAST of mRNA_H-elongata_contig144584.3059.1 vs. uniprot
Match: A0A7S1TVQ7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVQ7_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.170e-8
Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:  157 SPADLKFEEMQQYAYNLDTQMQNVARHTTALVKKQENLGATMFQFGVAFTLLANAEEDKAPLGQALLQLAHAADEV 384
            +P DL+FEE+ +Y   L+ Q+ NVA H  AL ++   LG  +F FG++F+LL  AE  K+ LG AL  +   ADE+
Sbjct:  170 TPEDLRFEELSEYIKGLEIQLDNVATHARALKERNAELGKGLFDFGLSFSLLGEAE--KSELGAALTSMGRVADEL 243
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BLAST of mRNA_H-elongata_contig144584.3059.1 vs. uniprot
Match: A0A2R5GT07_9STRA (Sorting nexin 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GT07_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 7.240e-7
Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:  154 KSPADLKFEEMQQYAYNLDTQMQNVARHTTALVKKQENLGATMFQFGVAFTLLANAEEDKAPLGQALLQLAHAADEVS 387
            ++  D KF+E++ Y   L+ Q+  V +HT  LV+K + +   +F FG+AFTLL  AE D   LG A+ QL   AD++S
Sbjct:  157 RTEGDDKFDELKDYVNALEPQINAVHKHTHGLVEKNKEMAQALFDFGLAFTLLGQAEGDA--LGDAMEQLGQCADKLS 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144584.3059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JKV5_9PHAE1.160e-6582.39PX domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A835Z9B1_9STRA9.690e-1946.27Sorting nexin 1 n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A7S2FTK2_9STRA5.240e-1136.15Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2CHT8_9STRA5.900e-1147.44Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7R9UCE3_9STRA9.940e-1045.45Hypothetical protein n=3 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2WCE5_9STRA2.470e-943.75Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S1TVQ7_9STRA1.170e-843.42Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2R5GT07_9STRA7.240e-741.03Sorting nexin 1 n=1 Tax=Hondaea fermentalgiana Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144584contigH-elongata_contig144584:102..1527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score224.9
Seed ortholog evalue2.1e-56
Seed eggNOG ortholog2880.D8LM83
Preferred nameSNX1
KEGG koko:K17917,ko:K17921
KEGG Pathwayko04144,map04144
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005771,GO:0005794,GO:0005802,GO:0005829,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0006897,GO:0006996,GO:0007034,GO:0007041,GO:0007275,GO:0008104,GO:0008150,GO:0008289,GO:0008333,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009958,GO:0009987,GO:0010008,GO:0010252,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0019898,GO:0022622,GO:0030904,GO:0031090,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032588,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035091,GO:0042592,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048364,GO:0048731,GO:0048856,GO:0048878,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098796,GO:0098805,GO:0099402
EggNOG free text desc.phosphatidylinositol binding
EggNOG OGsCOG5391@1,KOG2273@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size387
Cds size387
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144584.3059.1prot_H-elongata_contig144584.3059.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144584 102..1527 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929857.6088636-CDS-H-elongata_contig144584:101..1701622929857.6088636-CDS-H-elongata_contig144584:101..170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144584 102..170 -
1691679185.531899-CDS-H-elongata_contig144584:101..1701691679185.531899-CDS-H-elongata_contig144584:101..170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144584 102..170 -
1622929857.6302068-CDS-H-elongata_contig144584:553..6551622929857.6302068-CDS-H-elongata_contig144584:553..655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144584 554..655 -
1691679185.5438397-CDS-H-elongata_contig144584:553..6551691679185.5438397-CDS-H-elongata_contig144584:553..655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144584 554..655 -
1622929857.6423182-CDS-H-elongata_contig144584:1013..11001622929857.6423182-CDS-H-elongata_contig144584:1013..1100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144584 1014..1100 -
1691679185.553827-CDS-H-elongata_contig144584:1013..11001691679185.553827-CDS-H-elongata_contig144584:1013..1100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144584 1014..1100 -
1622929857.655118-CDS-H-elongata_contig144584:1398..15271622929857.655118-CDS-H-elongata_contig144584:1398..1527Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144584 1399..1527 -
1691679185.563218-CDS-H-elongata_contig144584:1398..15271691679185.563218-CDS-H-elongata_contig144584:1398..1527Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144584 1399..1527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144584.3059.1

>prot_H-elongata_contig144584.3059.1 ID=prot_H-elongata_contig144584.3059.1|Name=mRNA_H-elongata_contig144584.3059.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
QADDAGLADTKDKEKAERPPVRPQHVLRWFGEVATHVKTQVDKAKKDEAL
AKSPADLKFEEMQQYAYNLDTQMQNVARHTTALVKKQENLGATMFQFGVA
FTLLANAEEDKAPLGQALLQLAHAADEVS
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mRNA from alignment at H-elongata_contig144584:102..1527-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144584.3059.1 ID=mRNA_H-elongata_contig144584.3059.1|Name=mRNA_H-elongata_contig144584.3059.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1426bp|location=Sequence derived from alignment at H-elongata_contig144584:102..1527- (Himanthalia elongata Himel1 dioecious)
CAGGCGGACGACGCGGGCCTCGCCGACACGAAAGACAAAGAGAAGGCGGA
GCGACCGCCTGTTCGTCCCCAGCATGTTCTCCGCTGGTTCGGCGAGGTGG
CGACGCACGTGAAAACTCAGGTGGACAAGGTAAGAGGGTTAATCGGAGAG
GCAAGCGGAGGTACGCGAAGTATGTCATTTGAGAGTTGGGAGCAACGACG
AAGTCCTTAAAATTGAGCAATAGTGCTCTGGCAAGAGCTGTCGGTTACAT
TAGGGCAGTCTGCTCGCGAACACCTCATTTTGCTTTTCTCCTGTATTTCG
GCCGCCATTCGAGGAGGGTTCATCCTCCTGTAGAAGTGAAGAGGATGTGC
GTAGGTAATCTTCGCACTTCTTGTCGGTCGTGTATCGTTGCGGGTGGGGG
GGGGCTCAAACCTTTTCTGGCTCACAGGCGAAGAAGGACGAGGCCTTGGC
CAAGTCTCCAGCCGACCTAAAGTTCGAGGAGATGCAGCAGTACGCTTACA
ACCTGGATACGCAGGTGCGGAGAAAACAGAATTAGCTTGTGTTTTTGTAG
TCTCCGCCAGAGTCCTCCGACTTACTTTGATCCGCGTGTTGGAGGCATGG
CTAAAGATTATATACTCGGGACTGTGAGTTTGTATTTATTAAATTGCACA
TAACCGCGCAACCCGACCCTGCCATGCTAGTAATCCTAGGCTACCCGTAT
TGATGTGTGTATCTGTATGTGTGTGTGTGTGTGTGTTTAGCTACTTAGCG
TTCGTGGGCAAAAAACCTTGAAGAGGAAATGCCTGCCGAATCCGTTATCG
TCTCTTCCTGCCGAATCCGTTGTCGTCTTACACTTCTCGGCTTTCCCGCG
GTGCACACCACTGCCTTGGAAGATGCAAAACGTCGCGAGGCACACCACTG
CCTTGGTGAAGAAGCAGGAGAATCTTGGAGCCACGATGTTCCAGTTCGGT
GTAGCCTTCACCTTGCTGGCCAACGTAAGCGAACAAGGACACGCGGTACG
TACAAACTGCGTGTCACGCGATGTGTGCGTGCATGCGTGCGTGATATATA
TAGTCTCTGGCTTTGATGCCCCGCACTAGATTTTAGCTGTTTAGTCTCGG
GTTACGTGAGGTGATATCCATAAGAGGGGATTTTGTAGGAGTGTCGTGAG
AGGACACACGGTGTCGAATTATGTCTCAAGTCTCTTTATTTTCATGACGA
TTTTAATACCGTCCTATGTGGCCTTTCGCTTGAACATACCTTCTCAAAGC
AGTAGCCCCATCCGCATGATGGCATCTCAAGTACCAAATACGACTGGTGG
CAATACGCTGAAAGTGATTAACAAAAACCATAAAAACAAACACAAACCAC
TCGACAGGCTGAAGAAGACAAGGCCCCTCTCGGGCAGGCCTTGCTCCAGT
TGGCGCACGCTGCAGACGAGGTGAGC
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Coding sequence (CDS) from alignment at H-elongata_contig144584:102..1527-

>mRNA_H-elongata_contig144584.3059.1 ID=mRNA_H-elongata_contig144584.3059.1|Name=mRNA_H-elongata_contig144584.3059.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig144584:102..1527- (Himanthalia elongata Himel1 dioecious)
CAGGCGGACGACGCGGGCCTCGCCGACACGAAAGACAAAGAGAAGGCGGA
GCGACCGCCTGTTCGTCCCCAGCATGTTCTCCGCTGGTTCGGCGAGGTGG
CGACGCACGTGAAAACTCAGGTGGACAAGCAGGCGGACGACGCGGGCCTC
GCCGACACGAAAGACAAAGAGAAGGCGGAGCGACCGCCTGTTCGTCCCCA
GCATGTTCTCCGCTGGTTCGGCGAGGTGGCGACGCACGTGAAAACTCAGG
TGGACAAGGCGAAGAAGGACGAGGCCTTGGCCAAGTCTCCAGCCGACCTA
AAGTTCGAGGAGATGCAGCAGTACGCTTACAACCTGGATACGCAGGCGAA
GAAGGACGAGGCCTTGGCCAAGTCTCCAGCCGACCTAAAGTTCGAGGAGA
TGCAGCAGTACGCTTACAACCTGGATACGCAGATGCAAAACGTCGCGAGG
CACACCACTGCCTTGGTGAAGAAGCAGGAGAATCTTGGAGCCACGATGTT
CCAGTTCGGTGTAGCCTTCACCTTGCTGGCCAACATGCAAAACGTCGCGA
GGCACACCACTGCCTTGGTGAAGAAGCAGGAGAATCTTGGAGCCACGATG
TTCCAGTTCGGTGTAGCCTTCACCTTGCTGGCCAACGCTGAAGAAGACAA
GGCCCCTCTCGGGCAGGCCTTGCTCCAGTTGGCGCACGCTGCAGACGAGG
TGAGCGCTGAAGAAGACAAGGCCCCTCTCGGGCAGGCCTTGCTCCAGTTG
GCGCACGCTGCAGACGAGGTGAGC
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