mRNA_H-elongata_contig144555.3057.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144555.3057.1
Unique NamemRNA_H-elongata_contig144555.3057.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144555.3057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144555contigH-elongata_contig144555:73..717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929857.4842782-CDS-H-elongata_contig144555:72..1571622929857.4842782-CDS-H-elongata_contig144555:72..157Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144555 73..157 -
1691679185.4680595-CDS-H-elongata_contig144555:72..1571691679185.4680595-CDS-H-elongata_contig144555:72..157Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144555 73..157 -
1622929857.5237913-CDS-H-elongata_contig144555:631..7171622929857.5237913-CDS-H-elongata_contig144555:631..717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144555 632..717 -
1691679185.4848752-CDS-H-elongata_contig144555:631..7171691679185.4848752-CDS-H-elongata_contig144555:631..717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144555 632..717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144555.3057.1prot_H-elongata_contig144555.3057.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144555 73..717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144555.3057.1

>prot_H-elongata_contig144555.3057.1 ID=prot_H-elongata_contig144555.3057.1|Name=mRNA_H-elongata_contig144555.3057.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
SQKADETLRALRVAEDTSRVAAAEAERRRFEEEASDRAARQAESEARKAH
WRADEAQ
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mRNA from alignment at H-elongata_contig144555:73..717-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144555.3057.1 ID=mRNA_H-elongata_contig144555.3057.1|Name=mRNA_H-elongata_contig144555.3057.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=645bp|location=Sequence derived from alignment at H-elongata_contig144555:73..717- (Himanthalia elongata Himel1 dioecious)
TCACAGAAGGCAGACGAGACTCTCCGTGCGCTGCGAGTGGCGGAAGACAC
GTCACGCGTTGCCGCCGCTGAGGCCGAGAGACGCAGGTGATGAGGGCAAC
AGAAAATACTATGAATATATGATAAGCCCTCCAGCAGGCTTTTGACGGTT
GACGGCTGTCGTTCAAGTATATGCGCGTTCTCTTTGTACCGGCCGCGGCA
GGGCAGGGCAGGGCGGGGCGGGCGGTTGAACAGTTGCCGGTTCATTTGTT
CGCTCAATGGGGCTTTCTTTCGCTGGTGGCGGTTCGGGTGGCCGAATGTA
TTGTTCGGGGGGGGGTTAGAGAGAGAGAGAGGTCGCTGTGACCGATTTGT
GTAGCCGTTTTTTTTGCTTCTATCCGTTTGCTAATCTGGTATGGTCTGGC
CTGGCCTGACTTTTCCTCTCTTTTTATTTTTATTTTTTTAATTATTATTA
TTTATTTATTTTTCTCGCTCGTTTCTTTCTTTCCCTGGCTCTCTTTTTTT
CTCCCTCTCCCATATTTTTCCATTTTCTAATCCAAAACGGCAAATAAAAA
ACCTCCAAAGATTTGAGGAGGAGGCCTCAGATCGCGCGGCGCGGCAGGCA
GAGTCGGAGGCGAGGAAGGCTCACTGGCGTGCTGATGAAGCGCAA
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Coding sequence (CDS) from alignment at H-elongata_contig144555:73..717-

>mRNA_H-elongata_contig144555.3057.1 ID=mRNA_H-elongata_contig144555.3057.1|Name=mRNA_H-elongata_contig144555.3057.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig144555:73..717- (Himanthalia elongata Himel1 dioecious)
TCACAGAAGGCAGACGAGACTCTCCGTGCGCTGCGAGTGGCGGAAGACAC
GTCACGCGTTGCCGCCGCTGAGGCCGAGAGACGCAGTCACAGAAGGCAGA
CGAGACTCTCCGTGCGCTGCGAGTGGCGGAAGACACGTCACGCGTTGCCG
CCGCTGAGGCCGAGAGACGCAGATTTGAGGAGGAGGCCTCAGATCGCGCG
GCGCGGCAGGCAGAGTCGGAGGCGAGGAAGGCTCACTGGCGTGCTGATGA
AGCGCAAATTTGAGGAGGAGGCCTCAGATCGCGCGGCGCGGCAGGCAGAG
TCGGAGGCGAGGAAGGCTCACTGGCGTGCTGATGAAGCGCAA
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