mRNA_H-elongata_contig144549.3056.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144549.3056.1
Unique NamemRNA_H-elongata_contig144549.3056.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144549.3056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144549contigH-elongata_contig144549:996..1488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size493
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144549.3056.1prot_H-elongata_contig144549.3056.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144549 1004..1321 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929857.40326-UTR-H-elongata_contig144549:995..10031622929857.40326-UTR-H-elongata_contig144549:995..1003Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144549 996..1003 +
1691679185.4313297-UTR-H-elongata_contig144549:995..10031691679185.4313297-UTR-H-elongata_contig144549:995..1003Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144549 996..1003 +
1622929857.4350584-UTR-H-elongata_contig144549:1321..14881622929857.4350584-UTR-H-elongata_contig144549:1321..1488Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144549 1322..1488 +
1691679185.4584875-UTR-H-elongata_contig144549:1321..14881691679185.4584875-UTR-H-elongata_contig144549:1321..1488Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144549 1322..1488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929857.4196644-CDS-H-elongata_contig144549:1003..13211622929857.4196644-CDS-H-elongata_contig144549:1003..1321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144549 1004..1321 +
1691679185.4432118-CDS-H-elongata_contig144549:1003..13211691679185.4432118-CDS-H-elongata_contig144549:1003..1321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144549 1004..1321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144549.3056.1

>prot_H-elongata_contig144549.3056.1 ID=prot_H-elongata_contig144549.3056.1|Name=mRNA_H-elongata_contig144549.3056.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MFATDTSDQTRQRRHTIYLHFVSKPSIINNQYLALPFLLPSSPYIYKASV
GPSPIGTTLSRLPFLLLLPKISTVFFSLTLLQPSSPLPDPSHRWALVIRM
AQRSR*
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mRNA from alignment at H-elongata_contig144549:996..1488+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144549.3056.1 ID=mRNA_H-elongata_contig144549.3056.1|Name=mRNA_H-elongata_contig144549.3056.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=493bp|location=Sequence derived from alignment at H-elongata_contig144549:996..1488+ (Himanthalia elongata Himel1 dioecious)
GGTTAATAATGTTTGCTACAGACACCTCTGATCAGACGCGTCAAAGGAGA
CATACTATCTATCTACATTTCGTATCTAAGCCATCAATAATCAATAATCA
ATACCTTGCGCTTCCTTTTCTACTTCCTTCTTCGCCATATATATATAAAG
CTTCGGTCGGCCCTTCCCCTATTGGAACAACGCTCTCCCGTCTACCCTTT
TTATTATTGTTGCCCAAAATCTCCACCGTTTTCTTCTCTCTTACGCTTCT
TCAACCATCATCTCCCCTCCCCGATCCCTCTCACCGCTGGGCTTTGGTCA
TTCGCATGGCACAACGCTCTCGCTGAGGCATCGAATCTTGCGACCGTGGA
TGCAGATTACCCGTTACCGTGTGTGTGAAAGTGTGTGGTAAAAGAGTATC
ATTACAGCACGAAACACGCGGTTTTGACCCAAGTATCGTTGCTCTTTCTA
TCTCTCCACCATATCGTTGTTGTCGTTTCTCACGTTCAGCGTG
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Coding sequence (CDS) from alignment at H-elongata_contig144549:996..1488+

>mRNA_H-elongata_contig144549.3056.1 ID=mRNA_H-elongata_contig144549.3056.1|Name=mRNA_H-elongata_contig144549.3056.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig144549:996..1488+ (Himanthalia elongata Himel1 dioecious)
ATGTTTGCTACAGACACCTCTGATCAGACGCGTCAAAGGAGACATACTAT
CTATCTACATTTCGTATCTAAGCCATCAATAATCAATAATCAATACCTTG
CGCTTCCTTTTCTACTTCCTTCTTCGCCATATATATATAAAGCTTCGGTC
GGCCCTTCCCCTATTGGAACAACGCTCTCCCGTCTACCCTTTTTATTATT
GTTGCCCAAAATCTCCACCGTTTTCTTCTCTCTTACGCTTCTTCAACCAT
CATCTCCCCTCCCCGATCCCTCTCACCGCTGGGCTTTGGTCATTCGCATG
GCACAACGCTCTCGCTGAATGTTTGCTACAGACACCTCTGATCAGACGCG
TCAAAGGAGACATACTATCTATCTACATTTCGTATCTAAGCCATCAATAA
TCAATAATCAATACCTTGCGCTTCCTTTTCTACTTCCTTCTTCGCCATAT
ATATATAAAGCTTCGGTCGGCCCTTCCCCTATTGGAACAACGCTCTCCCG
TCTACCCTTTTTATTATTGTTGCCCAAAATCTCCACCGTTTTCTTCTCTC
TTACGCTTCTTCAACCATCATCTCCCCTCCCCGATCCCTCTCACCGCTGG
GCTTTGGTCATTCGCATGGCACAACGCTCTCGCTGA
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