mRNA_H-elongata_contig14448.3053.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14448.3053.1
Unique NamemRNA_H-elongata_contig14448.3053.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig14448.3053.1 vs. uniprot
Match: D7FM61_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM61_ECTSI)

HSP 1 Score: 644 bits (1661), Expect = 7.470e-200
Identity = 422/943 (44.75%), Postives = 511/943 (54.19%), Query Frame = 3 
Query:    3 APNVSVEDMVISMASLRQSVPPPERLTLPMLQVKQDLQEDREVCSFGSNSTPELGRDLLWDGPEEFDLDEAGRI-ISVYSPNRQVLISSAPRASAPASTAIPLTSPANPFGPGFASSDKSDSGSTAGTAGVSRTLGAAAAVSAPALVPASTNPFAAEPPTLVATASASTLGLTSVSASSAVSANPFAPSPPPEEERVDAQASIGSPIDVL--------GGSLEVDGGYG------AGVDTSLVAVR--GGNAFPGGETLVQ-----SRG----RSASESNDGRDAASDFGV----VDGAIGVAENVDGVTANATAGRREEGSKGEGGIPGA-FAFDGAVFRDARRLFGAHLGGRSYHFGKQRAEVVLRRPGGLRLGIWRPPWDEREERERXXXXGKAASEKIDYEADHKMD------DIRSDRRHPSKDPLSVRKSADDCDYLAEDGHL---------------------------AGDAQGVQEESAEGPAADMGAGPISTVQDIQVSGSSSSHNSGSRSLGGERPAVLEEVLHKDVIADFNCLGSGDAFGIVGCVIASVSKDPFFTTEVSLKLPTFEEVSDMLTSSKEYPLFVQLCRPPLVFTPEPEYPSVKLLTTLAFTNRNVEKVHGEYRFGDLLEDDGRARWVATTTAVASDVGDLGTNMLISLPDYHVVGLYSLTQEEAMALLAGYPNRDVFVYVHGFNTPFGFGVRSVVVKGRAFRKSLGVCLAWPSNPPGEGVGWLIKQVMSTYERRYTYCEHNMHATIFLFLQVGLDIKAAADLGGKILCWKGHSMGCYLLLNVVDRLRWKGENLQPLFRRVILDAPDVPTWFFSSMTQVLADNGVEVCHYFNPEDKAIYASCSRRALQRPVPGQDAIVAHPLVQAVLCEKTRSSTSMNHDYGRTDGRCLLDQRDFLAAEPPEQRVLEERFSSEGITCWQLKTW 2639
            AP+V+VED  I+ AS+R   PP ERLTL M +V+Q   +  + C FG N+ PE   DLLW+GPEE  LDEAGR+ +S  S    +  S    A+AP+++      P+                      G++R L                                                                                    G    + G G      A    ++V  R  GG     GETL+      S G    RS+     G D+++D        +  IG     D +    TA      S G    PGA F+F+  VFRDA  +FGAH+GG+SY  G+QR EVVLR PGGLRLGIWRPP DEREERERX   GKAASE +        D      D ++   H     LS     D  D +                                 AG A    E  A          P    +D+            SR L  ERPAV+EEVLH DV++ FNC GS   FG+VGCV+AS+S++PF  TEVS K+ +FEE    L SS EYPLFVQLCRPPLVF+ EPEYP+VKLL+ L  TNR +EKV GE+R G L+ +DG +RW+ +TTAV + + DLGT M ++L DYHVVGLY LT EEAM+LL  +P++DV ++VHGFNT F +G+R+  VKGRA RK L VCLAWPSNPPGEG GWLIK+                           L++KAAAD  GK++CWKGHSMGCYLLLNVVDRLRWKGE++Q LFR VILDAPDVPTWFF SM +VLA+NGV V HYFNP D AI ASC RRALQRPVPGQDAIV HP+VQ VLC+K+ SST MNHDYGR DGRCLLDQRDFLA EPP+QRVLEE  + EG  CWQLKTW
Sbjct: 1161 APSVAVEDRAIAAASIRDGRPPNERLTLAMSEVRQSRTDGLKECFFGDNTLPEPLSDLLWEGPEECALDEAGRMMVSTPSWKSPLAGSGNAPAAAPSASTXXXXXPS----------------------GMTRKLSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSGKKAEEEGEGRPLMPTANGQPAVVCDRPAGGEERGYGETLLATVTLPSHGGDGDRSSPPDLAGPDSSADVPTKGASANDRIGAGSATDRINRTGTA----FSSSGARRSPGAAFSFEADVFRDAGVMFGAHVGGKSYRLGRQRVEVVLREPGGLRLGIWRPPVDEREERERXKDKGKAASELVSEHLSLSEDGTLNWGDAKTSN-HEFNVFLSGANENDGGDDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTAGLASPTSEPDARRSPTRKSPTPSPRGRDV------------SRLLT-ERPAVVEEVLHGDVVSGFNCSGSNQGFGVVGCVVASISREPFPDTEVSPKMLSFEEARTALASS-EYPLFVQLCRPPLVFSTEPEYPAVKLLSNLVLTNRAMEKVDGEFRCGTLISEDGSSRWLLSTTAVPASIPDLGTKMEVNLLDYHVVGLYLLTSEEAMSLLRYHPSQDVLLFVHGFNTTFNYGIRASAVKGRALRKPLMVCLAWPSNPPGEGAGWLIKRA-------------------------ALEVKAAADTSGKLMCWKGHSMGCYLLLNVVDRLRWKGEDMQALFREVILDAPDVPTWFFRSMVKVLAENGVNVVHYFNPLDNAIQASCHRRALQRPVPGQDAIVTHPIVQGVLCDKSYSSTGMNHDYGRADGRCLLDQRDFLAGEPPDQRVLEETVTGEGAACWQLKTW 2037
[Close]
BLAST of mRNA_H-elongata_contig14448.3053.1 vs. uniprot
Match: A0A6H5KZU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZU0_9PHAE)

HSP 1 Score: 458 bits (1179), Expect = 1.860e-147
Identity = 228/382 (59.69%), Postives = 270/382 (70.68%), Query Frame = 3 
Query: 1539 TFEEVSDMLTSSKEYPLFVQLCRPPLVFTPEPEYPSVKLLTTLAFTNRNVEKVHGEYRFGDLLEDDGRARWVATTTAVASDVGDLGTNMLISLPDYHVVGLYSLTQEE------------------------------------------------AMALLAGYPNRDVFVYVHGFNTPFGFGVRSVVVKGRAFRKSLGVCLAWPSNPPGEGVGWLIKQVMSTYERRYTYCEHNMHATIFLFLQVGLDIKAAADLGGKILCWKGHSMGCYLLLNVVDRLRWKGENLQPLFRRVILDAPDVPTWFFSSMTQVLADNGVEVCHYFNPEDKAIYASCSRRALQRPVPGQDAIVAHPLVQAVLCEKTRSSTSMNHDYGRTDGRCLL 2540
            +FEE    L SS EYPLFVQ CRPPLVF+ EPEYP+VKLL+ L  TNR +EKV GE+R G L+ +DG +RW+ +TTAV + + DLGT M ++L DYHVVGLY LT EE                                                AM+LL  +P++DV ++VHGFNT F +G+R+  VKGRA RK L VCLAWPSNPPGEG GWLIK+VMSTYERRYTYCEHNMHA+IFLFLQ  L++KAAAD  GK++CWKGHSMGCYLLLNVVDRLRWKGE++Q LFR VILDAPDVPTWFF SM +VLA+NGV V HYFNP D AI ASC RRALQRPVPGQDAIV HP+VQ VLC+K+    ++ H   R  G+ ++
Sbjct:    3 SFEEARTALASS-EYPLFVQFCRPPLVFSTEPEYPAVKLLSNLVLTNRAMEKVDGEFRCGTLISEDGSSRWLLSTTAVPASIPDLGTKMEVNLLDYHVVGLYLLTSEEPTQPRARLRDGIIHHAVRTFLMSHIPAPLYVSNNLHIGGLFRRVGTRQAMSLLRDHPSQDVLLFVHGFNTTFNYGIRASAVKGRALRKPLTVCLAWPSNPPGEGAGWLIKRVMSTYERRYTYCEHNMHASIFLFLQAALEVKAAADASGKLMCWKGHSMGCYLLLNVVDRLRWKGEDMQALFREVILDAPDVPTWFFRSMVKVLAENGVNVVHYFNPLDNAIQASCHRRALQRPVPGQDAIVTHPIVQGVLCDKSYRQ-ALKHACMRHRGQLVV 382
[Close]
BLAST of mRNA_H-elongata_contig14448.3053.1 vs. uniprot
Match: A0A7S2F989_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F989_9STRA)

HSP 1 Score: 259 bits (661), Expect = 8.910e-73
Identity = 153/424 (36.08%), Postives = 229/424 (54.01%), Query Frame = 3 
Query: 1374 LGGERPAVLEEVLHKDVIADFNCLGSGDAFGIVGCVIASVSKDPFFTTEVSLKLPTFEEVSDMLTSSKEYPLFVQLCRPPLVFTPEPEYPSVKLLTTLAFTNRNVE-KVHGEYRFGDLLEDDGRARWVATTTAVASDVGDLGTNMLISLPDYHVVGLYSLTQEEAMALLAGYPNRDVFVYVHGFNTPFGFGVRSVVVKGRAFRKSLGVCLAWPSNPPGEGV--GWLIKQVMSTYERRYTYCEHNMHATIFLFLQVGLDIKAAADLGGKILCWKGHSMGCYLLLNVVDRLRWKGENLQPLFRRVILDAPDVPTWFFSSMTQVLADNGVEVCHYFNPEDKAIYASCSRRALQRPVPGQDAIVAHPLVQAVLCEKTRSSTSMNHDYGRTDGRCLLDQRDFLAAEPPEQRVLEERFSSEGITCWQLKT 2636
            LG  R A    V  +D+I  FN + +     IVG  + S+S   +   + +  +P F +V + L +   +P+FVQ+     +  P      ++L+ T+  TNR V  +  GE+ F  LL+ D       +T A+   + + G +M++ +    V G   L   E +  +A   +  +F+Y HGF T   F + +  +  R F++ L + + WPSNP  EGV  GW I + MST ER Y   E +MHA+    L +   ++    L  K + WK HSMGCYLLL ++++L  KG+ L  +F +VILDAPDVPTW+F  +    A  GV+  H ++P DKA  AS  RR ++ P PG D ++ H  +Q V C K  S+ S NHDYGR DG  L+DQRDFLA  PP++R+L+      G + W L+T
Sbjct:   12 LGAARVAG---VRSQDIITHFNDMNTVHV-PIVGLFVVSISSSTWDYDDTAPPVP-FADVLEALKAGP-FPIFVQMSDLQELTVPV----RMQLVQTMNVTNRQVRHRETGEFEFSSLLDADLTCG--VSTVAIPMGLPEFGRDMVLDMSTIVVCGFRRLPTNEMLEAIARSTSSSMFIYTHGFGTSMYFALVTSAIYCRCFQQPLVLLMTWPSNPKAEGVAGGWAISKFMSTLERNYVAAEQHMHASCLPLLTLATLVRDKCALTKKRMHWKAHSMGCYLLLQMMEKLHLKGD-LAGMFSKVILDAPDVPTWYFRQVVNTCASLGVDFLHLYSPNDKATDASRVRRNIEPPCPGNDVVLVHDRIQTVNCCKAVSTNSFNHDYGRRDGFTLMDQRDFLADIPPKERLLDLIVEKNGASRWSLRT 422
[Close]
BLAST of mRNA_H-elongata_contig14448.3053.1 vs. uniprot
Match: A0A835ZHN6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHN6_9STRA)

HSP 1 Score: 269 bits (688), Expect = 7.260e-70
Identity = 176/490 (35.92%), Postives = 239/490 (48.78%), Query Frame = 3 
Query: 1386 RPAVLEEVLHKDVIADFNCLGSGDAFGIVGCVIASVSKDPFFTTEVSLKLPTFEEVS---DMLTSSKEYPLFVQLCRPPLVFTPEPEY-------------------------------------PSVKLLTT--------LAFTNRNVEK-VHGEYRFG-----------------DLLEDDGRARWVATTTAVASDVGDLG-TNMLISLPDYHVVGLYSLTQEEAMALLAGYPNRDVFVYVHGFNTPFGFGVRSVVVKGRAFRKSLGVCLAWPSNPPGEGVGWLIKQVMSTYERRYTYCEHNMHATIFLFLQVGLDIKAAADLGGKILCWKGHSMGCYLLLNVVDRLRWK----GENLQPLFRRVILDAPDVPT------------WFFSSMTQVLADNGVEVCHYFNPEDKAIYASCSRRALQRPVPGQDAIVAHPLVQAVLCEKTRSST-----SMNHDYGRTDGRCLLDQRDFLAAEPPEQRVLE 2591
            R A++ EVL   V+  FN  G+   F  VG V+A VS++P+     +L   +++EV    D    S  YPLFVQL   P       ++                                     P ++L           L  TNR  E+ + G+                     DL       +W   + A A+ + +LG   M +   +Y +VG Y LT   A ALL G+P R   VYVHGFN       R+  +  RA    L V L+WPS+P   G GWL+++VMS YER YT CEHNMHA++  F+Q  L +        + + W  HSMGCYLLLNV+DRL+++    G +   +F RV+L APDVPT            WFF+S     A  GV +CHY++P+D+A  AS  RRA + P PG  A++    V+ V C   RS++     S+NHDYGR DG CLLDQR+FL  EPPEQRVL+
Sbjct: 1551 RVALVTEVLDDTVVTGFNVAGTESPFFAVGAVVAGVSREPWGVAPGALL--SYKEVVAALDPAAPSTVYPLFVQLTACPPAAAHHAQHSGEEGRGDGGSRTPSRGGQQGQVDRGAGGGVGWGATMPPLRLAQNRHAHNAQVLVGTNRKRERDLAGDXXXXXXXXXXXXXXXXXXXGPDLAPGGAPLQWALLSIAFAAALPELGGAAMFVDTGEYTLVGTYVLTAAAAAALLRGHPARRALVYVHGFNNSLTHAARTAGLFARALHSPLTVLLSWPSDPQQTGRGWLLEKVMSAYERSYTRCEHNMHASVRPFVQAALFLARMP----QAITWSAHSMGCYLLLNVMDRLQYESGSSGLSAADIFSRVVLSAPDVPTCGVXXXXXXXXTWFFTSTVAAAASRGVRICHYYHPDDQATEASKKRRATEGPCPGNAAVLIAEGVETVDCSGARSASIGANVSLNHDYGRCDGYCLLDQREFLEGEPPEQRVLD 2034
[Close]
BLAST of mRNA_H-elongata_contig14448.3053.1 vs. uniprot
Match: A0A7S2G4H3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G4H3_9STRA)

HSP 1 Score: 198 bits (503), Expect = 2.000e-52
Identity = 110/279 (39.43%), Postives = 150/279 (53.76%), Query Frame = 3 
Query: 1788 DLGTNMLISLPDYHVVGLYSLTQEEAMALLAGYPNRDVFVYVHGFNTPFGFGVRSVVVKGRAFRKS-LGVCLAWPSNPPGEGVG-WLIKQVMSTYERRYTYCEHNMHATIFLFLQVGLDIKAAADLGGKILCWKGHSMGCYLLLNVVDRLRWKGEN------------LQPLFRRVILDAPDVPTWFFSSMTQVLADNGVEVCHYFNPEDKAIYASCSRRALQRPVPGQDAIVAHPLVQAVLCEKTRSSTSMNHDYGRTDGRCLLDQRDFLAAEPPEQR 2582
            + GT+  + L  + +V L+ +T ++A  ++      +V VYVHGF TPF   VRS  +  RA   S L V   WPS+P       W++ +++  +ER YT  E +MHA+I         ++       K + WK HSMG YLLLN +DR  W  E+            +   F R ILDAPDVPTWFF S  +  A+ GV+  H +NP DKA      RR+++   PG D IV H  V+ V C   R S S  HDYG+ DG  L++QRDFLA  PP+QR
Sbjct:   47 EYGTDHTVLLKSHRIVSLFPMTIQDARKMVIANSAEEVLVYVHGFATPFANAVRSGAIYARALSPSKLVVVFTWPSDPHMTVTSSWMVTKIIRDFERNYTIAEQHMHASILALEAFAQVVERWTRECSKSVLWKAHSMGNYLLLNCMDRFSWGREDALDTGPTNTPSLICRTFPRCILDAPDVPTWFFQSTVERCAERGVKFLHLYNPNDKATDLGRRRRSIEGKYPGNDKIVTHMNVENVSCAGARYS-SAGHDYGQVDGFVLMEQRDFLARVPPQQR 324
[Close]
BLAST of mRNA_H-elongata_contig14448.3053.1 vs. uniprot
Match: A0A7S2C063_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C063_9STRA)

HSP 1 Score: 155 bits (392), Expect = 4.810e-40
Identity = 72/151 (47.68%), Postives = 100/151 (66.23%), Query Frame = 3 
Query: 2187 HSMGCYLLLNVVDRLRWKGENLQPLFRRVILDAPDVPTWFFSSMTQVLADNGVEVCHYFNPEDKAIYASCSRRALQRPVPGQDAIVAHPLVQAVLCEKTRSSTSMNHDYGRTDGRCLLDQRDFLAAEPPEQRVLEERFSSE-GITCWQLKT 2636
            HSMGCYL+L++VDRL  +  ++  +F + ILDAPDVPTWFF+ +  + A  G E  H ++P DKA+ AS  RRA++ P PG   ++ H  +Q V C K  S+ ++NHDYGR DG  L+DQRDFLA  PP++R+L+     E G   W L+T
Sbjct:    1 HSMGCYLVLSLVDRLHQQSGDVAGIFSKAILDAPDVPTWFFTQICDMCATQGCEFLHLYSPNDKAVDASRVRRAIEPPCPGNGVVLVHERIQPVNCAKAVSNNTLNHDYGRRDGFTLMDQRDFLAGIPPKERLLDFVVDRESGFAHWDLRT 151
[Close]
BLAST of mRNA_H-elongata_contig14448.3053.1 vs. uniprot
Match: A0A6H5L0N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N8_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 1.510e-33
Identity = 105/227 (46.26%), Postives = 131/227 (57.71%), Query Frame = 3 
Query:  897 PGA-FAFDGAVFRDARRLFGAHLGGRSYHFGKQRAEVVLRRPGGLRLGIWRPPWDEREERERXXXXGKAASEKIDYEADHKMDDIRSDRRHPSKDPLSVRKSADDCDYLA--EDGHLAGDAQGVQE-----------ESAEGPAADMGAGPISTVQDIQVSGSSSSHNSGSRSLGGERPAVLEEVLHKDVIADFNCLGSGDAFGIVGCVIASVSKDPFFTTEVSLKL 1535
            PGA F+F+  VFRDA  +FGAH+GG+SY  G+QR EVVLR PGGLRLGIWRPP DEREERERX   GKAASE +   ++H    +  D  H     LS     D  D +   ED      A G+ E            S  G A+     P +     + S + S        L  ERPAV+EEVLH+DV++ FNC GS   FG+VGCV+AS+S++PF  TEVS K+
Sbjct: 1556 PGAAFSFEAGVFRDAGVMFGAHVGGKSYRLGRQRVEVVLREPGGLRLGIWRPPVDEREERERXKDKGKAASELV---SEHLS--LSEDGNHEFNVFLSGANENDGGDDVGGTEDTGSGKRADGIVEGGRTXXXPRXXXSTAGLASPT-LEPDARRSPTRKSPAPSPRGRDVSRLLTERPAVVEEVLHEDVVSGFNCSGSNQGFGVVGCVVASISREPFQDTEVSPKV 1776
[Close]
BLAST of mRNA_H-elongata_contig14448.3053.1 vs. uniprot
Match: A0A7S4A6C6_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6C6_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.960e-33
Identity = 144/477 (30.19%), Postives = 200/477 (41.93%), Query Frame = 3 
Query: 1395 VLEEVLHKDVIADFNCLGSGDAFG--IVGCVIASVSKDPFFT-----------TEVSLKLPTFEE--VSDMLTSSKEYPLFVQLCRPPLV-----------FT-----PEP--EYPSVK--LLTTLAFTNRNVEKVHGEYRFGDLLEDDG----------------RAR-----------WVATTTAVASDVGDLGTNMLISLPDYHVVGLYSLTQEEAMALLAGYPNRDVFVYVHGFNTPFGFGVRSVVVKGRAFRKSLGVCLAWPSNPPGEGVGWLIKQVMSTYERRYTYCEHNMHATIFLFLQVGLDIKAAADLGGKILCWKGHSMGCYLLLNVVDRLRWKGENLQPLFRRVILDAPDVPTWFFSSMTQVLADNGVEVCHYFNPEDKAIYASCSRRALQRPVPGQDAIVAH-PLVQAVLCEKTRSSTSMNHDYGRTDGRCLLDQRDFL-AAEPPEQRVLEERFSSEGITCWQLK 2633
            V+ +V    +I  F   G   A G  +VG  +  +S  P               + +L  P  EE        S +E+P FV L +PP             +T     PEP  E P  K  L   L  TNR      GE  F   L+ D                 RAR           W     A  + V   G      + ++  +G    ++E+ +  L    + D  VYVHGFN    F  R+  +  R     + +C+AWPSNPP     W I  V+S  ER YT  E  M  ++       L ++ A     + L W  HSMGCYLLL  +       +  +P F RV L APDVPTWFF    +      V   H F+  D+A+  S  RR L  PVPG  A++ + P V  + C +  ++T  NHDYGR D  C+L+Q  F   A P +++ LE+  S EG+  W L+
Sbjct:   90 VVSKVNDTAIIGGFEEAGRDRAAGHKVVGLRVVGISTTPHVVQAPPPPSSLVDAQKALSGPRTEEDGCCSRSLSIEEFPKFVLLQKPPDEAQEPVLADQGSYTWRDEKPEPPKEVPVKKYRLTKVLVATNRKPVLSEGEAVFSSTLDADAASPELTERKSHLGISARARAASQDQDEGLWWGCAVVACDASVPRDGPASC-DIENWTYLGWEPRSREDVLEALKQ-ADDDAHVYVHGFNNSLQFACRTAALLAR---DRVAICVAWPSNPPLPR-SWAIAAVLSVAERNYTAAEQQMQRSVRSVANAALLLREACK---RRLDWTAHSMGCYLLLLALR------DATKP-FARVTLLAPDVPTWFFVDSLKRGVRENVRFLHCFHSRDEAVEISRQRRGLDFPVPGNGAVLPNRPGVTVLDCSRC-AATLGNHDYGRVDFACVLEQGAFFEGARPEDRKALED--SGEGV--WVLR 545
[Close]
BLAST of mRNA_H-elongata_contig14448.3053.1 vs. uniprot
Match: A0A5C6DSJ6_9BACT (Uncharacterized protein n=1 Tax=Novipirellula aureliae TaxID=2527966 RepID=A0A5C6DSJ6_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 2.180e-7
Identity = 67/267 (25.09%), Postives = 114/267 (42.70%), Query Frame = 3 
Query: 1854 QEEAMALLAGYPNRDVFVYVHGFNTPFGFGV-RSVVVKGRAFRKSLGVCLAWPSNPPGEGVGWLIKQVMSTYERRYTYCEHNMHATIFLFLQVGLDIKAAADLGGKILCWKGHSMGCYLLLNVVDRLRW----KGENLQPLFRRVILDAPDVPT-WFFSSMTQVLADNGVEVCHYFNPEDKAIYASCSRRALQRPVPGQDAIVAHPLVQAVLCEKTRSSTSMNHDYGRTDGRCLLDQRDFLAAEPP--EQRVLEERFSSEGITCWQL 2630
            Q+   +++A  P RD+ V++HG+N  F   V R+  +      + + VC +WPS     G               YT  E+N   TI+   Q  L++  A + G   +    HSMG   +   ++++R+    +  +  P+F R++L APDV    F   +   L +   +V  Y + +D+A+ AS +     R       IV  P V+ +       S  + H Y   +   L D  + +    P  ++ +L  R   E I  WQL
Sbjct:  308 QQRMSSMIAKSPERDLLVFIHGYNVDFESAVLRTAQIAVDLPFEGVPVCYSWPSQASLMG---------------YTIDENNSEWTIYHLKQFLLEL--AEESGADSINVVAHSMGNRAMTAAIEQIRYELDPRDRDSVPMFDRIVLAAPDVDADRFRRDLAPALLEVSNQVTLYASSDDQALIASKTVHGYPRAGESGANIVVVPGVETIDVSGIDLSL-LGHSYYGDNESMLRDLYELVRKGLPAAKRNMLLTRRDGEQIY-WQL 555
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14448.3053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FM61_ECTSI7.470e-20044.75Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KZU0_9PHAE1.860e-14759.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2F989_9STRA8.910e-7336.08Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835ZHN6_9STRA7.260e-7035.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2G4H3_9STRA2.000e-5239.43Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2C063_9STRA4.810e-4047.68Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6H5L0N8_9PHAE1.510e-3346.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4A6C6_9STRA1.960e-3330.19Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A5C6DSJ6_9BACT2.180e-725.09Uncharacterized protein n=1 Tax=Novipirellula aure... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14448contigH-elongata_contig14448:491..7436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score651.0
Seed ortholog evalue8e-184
Seed eggNOG ortholog2880.D7FM61
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-16_004940.1
Exons10
Model size3648
Cds size2616
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14448.3053.1prot_H-elongata_contig14448.3053.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14448 517..6430 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929856.787388-UTR-H-elongata_contig14448:490..5161622929856.787388-UTR-H-elongata_contig14448:490..516Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14448 491..516 +
1691679185.1622584-UTR-H-elongata_contig14448:490..5161691679185.1622584-UTR-H-elongata_contig14448:490..516Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14448 491..516 +
1622929857.0454564-UTR-H-elongata_contig14448:6430..74361622929857.0454564-UTR-H-elongata_contig14448:6430..7436Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14448 6431..7436 +
1691679185.251407-UTR-H-elongata_contig14448:6430..74361691679185.251407-UTR-H-elongata_contig14448:6430..7436Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14448 6431..7436 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929856.80725-CDS-H-elongata_contig14448:516..6091622929856.80725-CDS-H-elongata_contig14448:516..609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14448 517..609 +
1691679185.1742444-CDS-H-elongata_contig14448:516..6091691679185.1742444-CDS-H-elongata_contig14448:516..609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14448 517..609 +
1622929856.8196418-CDS-H-elongata_contig14448:1241..22721622929856.8196418-CDS-H-elongata_contig14448:1241..2272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14448 1242..2272 +
1691679185.1813939-CDS-H-elongata_contig14448:1241..22721691679185.1813939-CDS-H-elongata_contig14448:1241..2272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14448 1242..2272 +
1622929856.8345993-CDS-H-elongata_contig14448:2590..29721622929856.8345993-CDS-H-elongata_contig14448:2590..2972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14448 2591..2972 +
1691679185.1885054-CDS-H-elongata_contig14448:2590..29721691679185.1885054-CDS-H-elongata_contig14448:2590..2972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14448 2591..2972 +
1622929856.8668032-CDS-H-elongata_contig14448:3172..33511622929856.8668032-CDS-H-elongata_contig14448:3172..3351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14448 3173..3351 +
1691679185.1956007-CDS-H-elongata_contig14448:3172..33511691679185.1956007-CDS-H-elongata_contig14448:3172..3351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14448 3173..3351 +
1622929856.8803318-CDS-H-elongata_contig14448:3628..37791622929856.8803318-CDS-H-elongata_contig14448:3628..3779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14448 3629..3779 +
1691679185.2027342-CDS-H-elongata_contig14448:3628..37791691679185.2027342-CDS-H-elongata_contig14448:3628..3779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14448 3629..3779 +
1622929856.894619-CDS-H-elongata_contig14448:4136..43251622929856.894619-CDS-H-elongata_contig14448:4136..4325Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14448 4137..4325 +
1691679185.212715-CDS-H-elongata_contig14448:4136..43251691679185.212715-CDS-H-elongata_contig14448:4136..4325Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14448 4137..4325 +
1622929856.9331973-CDS-H-elongata_contig14448:4661..47361622929856.9331973-CDS-H-elongata_contig14448:4661..4736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14448 4662..4736 +
1691679185.2201066-CDS-H-elongata_contig14448:4661..47361691679185.2201066-CDS-H-elongata_contig14448:4661..4736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14448 4662..4736 +
1622929856.9499686-CDS-H-elongata_contig14448:5096..52941622929856.9499686-CDS-H-elongata_contig14448:5096..5294Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14448 5097..5294 +
1691679185.2270916-CDS-H-elongata_contig14448:5096..52941691679185.2270916-CDS-H-elongata_contig14448:5096..5294Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14448 5097..5294 +
1622929856.988532-CDS-H-elongata_contig14448:5888..60521622929856.988532-CDS-H-elongata_contig14448:5888..6052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14448 5889..6052 +
1691679185.2370963-CDS-H-elongata_contig14448:5888..60521691679185.2370963-CDS-H-elongata_contig14448:5888..6052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14448 5889..6052 +
1622929857.0302014-CDS-H-elongata_contig14448:6276..64301622929857.0302014-CDS-H-elongata_contig14448:6276..6430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14448 6277..6430 +
1691679185.2442496-CDS-H-elongata_contig14448:6276..64301691679185.2442496-CDS-H-elongata_contig14448:6276..6430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14448 6277..6430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14448.3053.1

>prot_H-elongata_contig14448.3053.1 ID=prot_H-elongata_contig14448.3053.1|Name=mRNA_H-elongata_contig14448.3053.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=872bp
MVISMASLRQSVPPPERLTLPMLQVKQDLQEDREVCSFGSNSTPELGRDL
LWDGPEEFDLDEAGRIISVYSPNRQVLISSAPRASAPASTAIPLTSPANP
FGPGFASSDKSDSGSTAGTAGVSRTLGAAAAVSAPALVPASTNPFAAEPP
TLVATASASTLGLTSVSASSAVSANPFAPSPPPEEERVDAQASIGSPIDV
LGGSLEVDGGYGAGVDTSLVAVRGGNAFPGGETLVQSRGRSASESNDGRD
AASDFGVVDGAIGVAENVDGVTANATAGRREEGSKGEGGIPGAFAFDGAV
FRDARRLFGAHLGGRSYHFGKQRAEVVLRRPGGLRLGIWRPPWDEREERE
REKDKGKAASEKIDYEADHKMDDIRSDRRHPSKDPLSVRKSADDCDYLAE
DGHLAGDAQGVQEESAEGPAADMGAGPISTVQDIQVSGSSSSHNSGSRSL
GGERPAVLEEVLHKDVIADFNCLGSGDAFGIVGCVIASVSKDPFFTTEVS
LKLPTFEEVSDMLTSSKEYPLFVQLCRPPLVFTPEPEYPSVKLLTTLAFT
NRNVEKVHGEYRFGDLLEDDGRARWVATTTAVASDVGDLGTNMLISLPDY
HVVGLYSLTQEEAMALLAGYPNRDVFVYVHGFNTPFGFGVRSVVVKGRAF
RKSLGVCLAWPSNPPGEGVGWLIKQVMSTYERRYTYCEHNMHATIFLFLQ
VGLDIKAAADLGGKILCWKGHSMGCYLLLNVVDRLRWKGENLQPLFRRVI
LDAPDVPTWFFSSMTQVLADNGVEVCHYFNPEDKAIYASCSRRALQRPVP
GQDAIVAHPLVQAVLCEKTRSSTSMNHDYGRTDGRCLLDQRDFLAAEPPE
QRVLEERFSSEGITCWQLKTW*
back to top

mRNA from alignment at H-elongata_contig14448:491..7436+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14448.3053.1 ID=mRNA_H-elongata_contig14448.3053.1|Name=mRNA_H-elongata_contig14448.3053.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6946bp|location=Sequence derived from alignment at H-elongata_contig14448:491..7436+ (Himanthalia elongata Himel1 dioecious)
AGGCACCGAACGTGTCTGTGGAAGATATGGTCATCTCCATGGCGTCGCTG
AGGCAGAGCGTGCCTCCTCCCGAGAGGCTGACGCTGCCGATGTTGCAGGT
CAAGCAGGACTTGCAAGAGGTGATGTGTTGTGGTGTGTTATGCTGCCGTG
TTGTGTGATCTGGTGAAGGGATAATATTAAGAGTTGCGCGATTGTTTTCA
TTTTTTTGTGGCGATTCTGCGATTATATACCACGTATTATTATATATTGT
TATTATTATATACTGCGTATTATGATAGAATTATATATAATGCTATATGA
TATATTACATGGTAAACAAAGTGTTGTGAACGCTTTCGACATGCATGTCA
GATGACTGCGAAAACCAACTTAAATTGTATGAAATCGTATTAGGATTACT
TCTGCGGAAATTGCAAGGTTTCAGGAATATACAGCTCTGTTAGGAGCGCC
GCTAGTAGAGTGTCCGTTATCGCCTTCGTCGTACTCCTTGAAGGCGCTTG
ATGGTAACTCCACTGCATGTTTATGCTAAACCGGTACTGCACTGCTGTAT
GTTGTGTTGTTCTGTTACGAGAGCAATAAAAAGCGAGGAAATTTGTAAAT
GGTACGGGATTACAGCATATTTTACTGCAATATTACTCGAAGAGTAATGG
TGGCGTTACGCTCTTCTGTCACTGAAGCCGTGTCTGACTGGAATTGAACG
ACTTGAACGACCATATTAATTCTAAAGCCAACCCAACTCAACTAAAATTA
GGACCGGGAGGTGTGCTCGTTCGGGAGCAACAGTACCCCAGAGCTCGGGA
GAGATCTGCTGTGGGACGGACCAGAGGAGTTCGATCTCGACGAAGCCGGC
CGCATCATATCCGTGTACAGCCCCAATCGCCAGGTACTGATCAGTTCGGC
ACCGCGCGCATCCGCACCGGCTTCCACCGCAATCCCCTTGACATCGCCGG
CGAACCCCTTCGGACCTGGCTTTGCCTCGTCCGACAAGAGTGACAGTGGG
TCAACGGCAGGCACGGCAGGCGTGAGCCGAACGCTCGGTGCAGCTGCAGC
TGTGAGCGCGCCCGCACTCGTGCCTGCTTCGACGAATCCGTTTGCCGCCG
AGCCTCCAACTCTAGTAGCAACAGCGTCAGCATCAACGTTAGGGTTAACA
TCAGTGTCAGCATCATCAGCGGTGTCGGCGAATCCCTTCGCGCCTTCACC
GCCGCCTGAAGAAGAAAGAGTCGACGCTCAGGCATCTATCGGGTCGCCAA
TCGATGTCTTGGGTGGTTCGTTGGAGGTGGATGGCGGTTACGGCGCCGGT
GTGGACACCAGTCTCGTAGCCGTTCGCGGGGGTAACGCCTTTCCAGGAGG
AGAAACCCTTGTCCAGAGCCGAGGCCGAAGTGCCTCGGAGAGTAACGACG
GTCGAGATGCCGCGAGCGATTTTGGAGTTGTGGACGGTGCGATTGGTGTT
GCCGAGAACGTCGATGGCGTCACCGCTAATGCAACCGCCGGTCGACGAGA
GGAGGGGTCGAAGGGTGAGGGTGGCATCCCCGGAGCGTTCGCATTCGACG
GAGCAGTGTTCCGAGACGCGAGGCGACTGTTCGGCGCTCATCTTGGCGGT
AGATCGTACCACTTCGGCAAACAGCGCGCAGAAGTGGTCCTTCGCAGACC
GGGTGGGCTCCGGCTTGGAATCTGGCGACCCCCTTGGGATGAAAGGGAAG
AGCGAGAGAGGGAAAAGGACAAGGGGAAAGCGGCATCGGAAAAAATAGAT
TACGAGGCGGATCATAAGATGGACGACATCAGGTGCGGATGACTCTCACG
TGGTTGAAAAACTTCGTAGATGCGGTACAGGAGATTGCAAGATTGCAGCG
CCCTAGCACGCTATTTGGAGGCGTCGTGTGGAGTGGGTTAGAATTGAGCG
GACCTAGGGCACGCTTGTTCGGTAGCGATGACTGCGTTTACACCGCGTGC
CTGCGTTCGCTGCCATATATATTTTTATCGCTTATTTTTTTATCGATGAT
GCGGGCAAGTCTTTCGAGGGTTGCTGCTCAGGGGCAGTCCTCGCGTGGGC
GTAGGGTTGTAGATATTACCCTGAAATGCATGCCATTTCCTTTCCGACAG
GTCTGACCGCAGGCACCCTTCCAAGGACCCCCTCAGCGTGAGAAAAAGCG
CTGATGACTGTGATTACCTCGCTGAGGACGGTCACCTCGCTGGAGATGCT
CAAGGTGTACAGGAGGAGTCGGCAGAGGGACCCGCCGCAGATATGGGTGC
CGGTCCGATCAGTACCGTCCAGGACATTCAAGTCTCTGGCAGCAGCAGCA
GTCATAATAGCGGCAGCAGAAGCTTGGGTGGCGAACGACCGGCTGTGCTG
GAAGAAGTATTGCACAAGGACGTGATTGCTGACTTCAACTGCCTTGGATC
GGGCGACGCGTTCGGGATTGTGGGCTGCGTAATTGCGTCTGTCTCCAAGG
ACCCGTTCTTTACCACCGAGGTTTCCCTCAAGGTGCGCCAGATACCGGCA
CAGCCTCTCTCCCTCTCTCTCTTCACACTGTTGGCGTATTGTGCCATATT
GTGCGCAAGATCCCGAAAGTGTGTAATGCATGTCGGGGTATTGTGTTTGA
CCGCGCTACGGATGCTTCACGTTTAGCTTCCGCGTTTTATGCTGGCCCAA
AACGTCGATACGTCTTCCTGTCCGTTCATCAGTTGCCGACGTTCGAAGAG
GTGTCAGATATGCTGACTTCGTCGAAGGAGTACCCCCTGTTCGTGCAGCT
TTGTCGACCGCCGCTCGTGTTCACTCCCGAGCCCGAGTATCCTTCGGTAA
AGTTGCTGACGACCCTGGCTTTCACTAACCGCAACGTGGAGAAGGTTCAC
GGAGAGTACAGGTGATTCGCAATATCTTGTCACATAGTATTTAATAGTTC
AAATGAAGGCCGACCCTCGCACGGCTCGAGCTCGATCTCGATCCCATGTG
AGTCATTGTCATTGTAGTGTAGTGTAGTGTAGTGTGACCGTGATGATAAT
CCGGCATATAGCTATTATTGCCAGTCCGAGGAAAGGGCCGCTCGGTGTGG
TGTGGAGCCCTGAAGAGATCTCACCTTTCAGCGCTCTTGAATATTACCAG
ATAATGTTTTTTCTTTGGCTTTGGTTTCCGGCGTGCAGGTTTGGTGATCT
GTTGGAGGATGACGGCAGGGCTCGGTGGGTAGCAACAACCACGGCCGTGG
CTTCAGACGTGGGGGATCTTGGCACCAACATGCTAATCAGCCTCCCCGAC
TACCACGTGGTGGGCCTGTACTCACTCACACAGGAAGAGGCAAGCCTACC
AAATATTACGTAAACAACTGAAGCACGATGTAGGGATTTCTCTTTTGGCA
TGGCGTTCCTCGTCTGACACCTTGGGAACCGTGGAACCTTGTGCGCGAAT
AGCAACAGAGGAGCAGTGTTGTACGAGTAATTTATTTGCTTTCCAGTGTT
TTTAAGGCATGTGTCGCTCGCTAGTTAGGGCGTAAAGGTGAATGACATGC
ATAGAGCGTAGGGTATAAAGCTGTCGAGGTCATCTCTTAGAGACCTGCGT
CGGCCACATCCAGTCATTGGTACGGACAGTAGCGAATATCATGGACGACG
GCATGGTGAATGACTGGGTAATCGTGATATGGCGAACCAAAAATAGGCGA
TGGCTCTTTTGGCGGGGTATCCCAACCGAGACGTATTTGTCTATGTGCAT
GGCTTCAACACCCCCTTCGGCTTCGGCGTGCGGAGCGTGGTCGTCAAAGG
AAGGGCATTCAGGAAAAGTCTTGGTGTATGCCTAGCTTGGCCGTCTAATC
CTCCTGGGGAGGGCGTCGGCTGGCTCATCAAGCAGGTGCGCCCTCCACTT
GCTCGACTCATACTTGTTAGGGTTGCGTTCGTTACGTCGTGGCTCGTGGC
TCGTGGCTCGTGATTCGTCTTCTTGTCATTGGAGGGGGCGTAGCATAAAA
TCTGTACAGCAACCCGTTGTCATAGTTTCTTGATGCTTTGAAAAGTTCCA
TCATGTCCATGACGCGTATCTTTGACTCTTGGCGGCATAATAGGAATAAT
GAGATCCCTGGTATACGAAAGTACTAGTGCTCAGTATTAGCTAGCTCTAA
AGTCCAGTGGCGCGGACCAACCGGCCGGCTTTCTGCGCTGGTAACGTGTG
ACGTGTTGCATGGTAACGCAGGTGATGTCCACGTACGAGAGGCGCTACAC
GTATTGCGAGCACAACATGCACGCAACCATATTCCTCTTCCTCCAGGTGA
GGTTTGTAGTAGGCAATCTGCAGTGCAATGTAATGTACTGGTAGGCTTCT
TGAGTGGGTATTATCGTAATATTACTATTACTACAATATCATATTAATGT
ACTACAGCAGCTATAAAGCTATACGGTATGTAGTACGTAGTGAAGGTTAT
CGCTATTTGCATTGGTTTCTCTCTGACTCAGGCACCGAAAGCCTCGAAGT
GTGCCGTTATAATTTTTGGTGCTTGATGGCGATGGCTCGCTTGCTAAGCA
GGATGTCACTTTACAATGCTCTTTCGTATTACAGTTAATACCATGATCTA
CATATCCTCGCCATGCTTCTTGGTTGCCGACGCTTCTCGACACTGTGGAT
TATCAGGTGGGGTTGGACATCAAGGCTGCGGCAGACTTAGGAGGCAAGAT
TTTGTGCTGGAAGGGGCACTCTATGGGCTGCTATCTGCTGCTGAACGTGG
TGGACCGCCTGAGGTGGAAGGGTGAAAACTTGCAGCCGCTATTTCGACGA
GTTATCCTCGATGCTCCTGACGTGCCCACGTGGTTCTTCAGCTCCATGAC
CCAGGCATGTCCAAACTCATTTTGCCAAATATATATTTTGCACTATTCTG
TACTGTCTATATTAATTATTAATATATGTGGAGAGCCTAATGATACATCG
ATCGATCTTCCATTCAAGCTTGAGGTGCCTTCTCAGATTACATGTTATCT
TGAAAGAACTGTTCGGCTCAAATAGGCCCAAGAGCGGCACAAAGAGCTGC
TCAAAGGCCCACCAGGAATATGCTTTGCAATGCACATGTTGTTTATCTCT
ACACTAGGTATGAAGTAGATGTGTACACTTCAGTGCATGTGTATATGTAT
AGTCTATTTAGTGCATGTCTACATCCATAAATTATGTGTTTATGTTGTGT
ATTATATTTGTAGTAGTAAATGCACCCGAGGGCAAGAAGGACAGGTGGTG
TATCATATGTCTTAACAGGAACGACCGCCAAGTATCTTTTCCCATAGATC
TCCTCGGCTGTACCAGGTACCTTTTACGCATTAACGAAGTCTTAATATAC
CCCAATGGCGTACAAGAGAGAAAATAAGCCTCTCTATTGCATCGCATCGA
TTACCGAGGCAGCGATTACTTGACGCTCCCCCGTCCGCCCGGTTGCAGGT
GCTAGCTGACAACGGCGTGGAAGTTTGTCACTACTTCAACCCGGAAGATA
AAGCCATCTACGCTTCGTGCTCTCGGCGTGCCCTCCAGCGACCCGTACCG
GGACAGGACGCCATCGTTGCCCACCCCTTGGTGCAAGCAGTGCTGTGCGA
GAAAACCCGCAGGTGAAATGACATGAGGGATCCAGATGCCTATACATTCT
GCTGAAGTATTTTATCATATAATTTTTAAAACTACCTGGTAGGAAGAAAG
TGTGTGCTGTCATTCCATTTAATTCTGGACGTCAGTACTTAGTGCCAATT
ACTTGAGCAGTCTTCTGTGCTGTACTTTCCTGACCGTTGGTTTCATCATG
TCATCTCGTGTCCAACGTCCGTCGGCCGCCTGCTAGCTCGACCAGCATGA
ACCACGATTACGGCCGGACGGATGGGCGTTGTTTGCTGGATCAGCGGGAC
TTCTTGGCCGCGGAGCCGCCGGAACAGCGCGTCCTTGAAGAGAGGTTCTC
CAGCGAAGGAATAACTTGCTGGCAACTCAAGACGTGGTAATGCGTCCAGT
GTTATCACTTCGATCTGGACGTTTTTTGCTACAAGCGACCGACCACGTTT
GAATCAGTAAAGCGCGGTGGTGCAATGACCTCTCGAGTTACCCCTCCTGA
AAGAAAATGTCGTTCAAGCACTCCAGGTGAAATACAGTGTGGGGCCTCCC
TCCGTGACCATACACGTATTGCGAATACCTGATGGAAGTAAGAGTGAAGT
TTTGATGACTTAAGTGACTTTGTTGAAGTAAGTCAATTAGTGCGTTCGTT
CTCCTTATTGGTGGGCATGGCGTCGGTTAAGTGTATAACATTGGCATCGT
AAAATCAGCAATAGTAGTCAGTCAGGAGAGTCAGCGAGACAAGTTCTGGT
AGGTACGTCAATACTAGTAGTCCTACTGAGTGTGAAATGAAATAGTCGGG
CAAACGGGTATGACAATACCATTGCGATGGTGTTGGTAGTACCTCTGTAG
TAGTCCGATCGATGCCCCCTTGATTTTGTGGCGCCGCCTAAGCCCCCTTA
ATGCTACTTGTTCACAGTTTTTTATTTGCTCCTGCGCATGTTTTTCTTCC
TTTTCATTTCCAGCACTTCTGTATTTATTCATAGCAAGTCACGTGAAGAA
GAATGTGGCATGTCGTGGTATGATGCTGCGTTAGGCATGTTCTTAACGTT
TCTTGAATGATAAGTGTACTGTACGGCCACGCTCTGCGGCTCTGCGGCTC
TGCGACAGCTTGACGCCCGCGAAGAGCCGGGACGTGACTTGTTCACGTGC
GCCATACAGGTACCACATACAGTGCAGCTGAATTAGGGGGATTTCAATAA
ATTCAGTATTCAGTATGCATAAGCTCTAGCGCGATTGCCGAAGAAATGCG
ATGTCTGTTGTTTGCTTCCCCCGCACGCGGATATTATTTATGTTGGGTTG
ATATCAATGTGTAATTTATCATTAGGCCGTCACGTGACTGCGGGCCATAG
TCCCCGGGCGACATAAGAAGGGAAGCAAAGTATAGCTACTACCCTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig14448:491..7436+

>mRNA_H-elongata_contig14448.3053.1 ID=mRNA_H-elongata_contig14448.3053.1|Name=mRNA_H-elongata_contig14448.3053.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5232bp|location=Sequence derived from alignment at H-elongata_contig14448:491..7436+ (Himanthalia elongata Himel1 dioecious)
ATGGTCATCTCCATGGCGTCGCTGAGGCAGAGCGTGCCTCCTCCCGAGAG
GCTGACGCTGCCGATGTTGCAGGTCAAGCAGGACTTGCAAGAGATGGTCA
TCTCCATGGCGTCGCTGAGGCAGAGCGTGCCTCCTCCCGAGAGGCTGACG
CTGCCGATGTTGCAGGTCAAGCAGGACTTGCAAGAGGACCGGGAGGTGTG
CTCGTTCGGGAGCAACAGTACCCCAGAGCTCGGGAGAGATCTGCTGTGGG
ACGGACCAGAGGAGTTCGATCTCGACGAAGCCGGCCGCATCATATCCGTG
TACAGCCCCAATCGCCAGGTACTGATCAGTTCGGCACCGCGCGCATCCGC
ACCGGCTTCCACCGCAATCCCCTTGACATCGCCGGCGAACCCCTTCGGAC
CTGGCTTTGCCTCGTCCGACAAGAGTGACAGTGGGTCAACGGCAGGCACG
GCAGGCGTGAGCCGAACGCTCGGTGCAGCTGCAGCTGTGAGCGCGCCCGC
ACTCGTGCCTGCTTCGACGAATCCGTTTGCCGCCGAGCCTCCAACTCTAG
TAGCAACAGCGTCAGCATCAACGTTAGGGTTAACATCAGTGTCAGCATCA
TCAGCGGTGTCGGCGAATCCCTTCGCGCCTTCACCGCCGCCTGAAGAAGA
AAGAGTCGACGCTCAGGCATCTATCGGGTCGCCAATCGATGTCTTGGGTG
GTTCGTTGGAGGTGGATGGCGGTTACGGCGCCGGTGTGGACACCAGTCTC
GTAGCCGTTCGCGGGGGTAACGCCTTTCCAGGAGGAGAAACCCTTGTCCA
GAGCCGAGGCCGAAGTGCCTCGGAGAGTAACGACGGTCGAGATGCCGCGA
GCGATTTTGGAGTTGTGGACGGTGCGATTGGTGTTGCCGAGAACGTCGAT
GGCGTCACCGCTAATGCAACCGCCGGTCGACGAGAGGAGGGGTCGAAGGG
TGAGGGTGGCATCCCCGGAGCGTTCGCATTCGACGGAGCAGTGTTCCGAG
ACGCGAGGCGACTGTTCGGCGCTCATCTTGGCGGTAGATCGTACCACTTC
GGCAAACAGCGCGCAGAAGTGGTCCTTCGCAGACCGGGTGGGCTCCGGCT
TGGAATCTGGCGACCCCCTTGGGATGAAAGGGAAGAGCGAGAGAGGGAAA
AGGACAAGGGGAAAGCGGCATCGGAAAAAATAGATTACGAGGCGGATCAT
AAGATGGACGACATCAGGACCGGGAGGTGTGCTCGTTCGGGAGCAACAGT
ACCCCAGAGCTCGGGAGAGATCTGCTGTGGGACGGACCAGAGGAGTTCGA
TCTCGACGAAGCCGGCCGCATCATATCCGTGTACAGCCCCAATCGCCAGG
TACTGATCAGTTCGGCACCGCGCGCATCCGCACCGGCTTCCACCGCAATC
CCCTTGACATCGCCGGCGAACCCCTTCGGACCTGGCTTTGCCTCGTCCGA
CAAGAGTGACAGTGGGTCAACGGCAGGCACGGCAGGCGTGAGCCGAACGC
TCGGTGCAGCTGCAGCTGTGAGCGCGCCCGCACTCGTGCCTGCTTCGACG
AATCCGTTTGCCGCCGAGCCTCCAACTCTAGTAGCAACAGCGTCAGCATC
AACGTTAGGGTTAACATCAGTGTCAGCATCATCAGCGGTGTCGGCGAATC
CCTTCGCGCCTTCACCGCCGCCTGAAGAAGAAAGAGTCGACGCTCAGGCA
TCTATCGGGTCGCCAATCGATGTCTTGGGTGGTTCGTTGGAGGTGGATGG
CGGTTACGGCGCCGGTGTGGACACCAGTCTCGTAGCCGTTCGCGGGGGTA
ACGCCTTTCCAGGAGGAGAAACCCTTGTCCAGAGCCGAGGCCGAAGTGCC
TCGGAGAGTAACGACGGTCGAGATGCCGCGAGCGATTTTGGAGTTGTGGA
CGGTGCGATTGGTGTTGCCGAGAACGTCGATGGCGTCACCGCTAATGCAA
CCGCCGGTCGACGAGAGGAGGGGTCGAAGGGTGAGGGTGGCATCCCCGGA
GCGTTCGCATTCGACGGAGCAGTGTTCCGAGACGCGAGGCGACTGTTCGG
CGCTCATCTTGGCGGTAGATCGTACCACTTCGGCAAACAGCGCGCAGAAG
TGGTCCTTCGCAGACCGGGTGGGCTCCGGCTTGGAATCTGGCGACCCCCT
TGGGATGAAAGGGAAGAGCGAGAGAGGGAAAAGGACAAGGGGAAAGCGGC
ATCGGAAAAAATAGATTACGAGGCGGATCATAAGATGGACGACATCAGGT
CTGACCGCAGGCACCCTTCCAAGGACCCCCTCAGCGTGAGAAAAAGCGCT
GATGACTGTGATTACCTCGCTGAGGACGGTCACCTCGCTGGAGATGCTCA
AGGTGTACAGGAGGAGTCGGCAGAGGGACCCGCCGCAGATATGGGTGCCG
GTCCGATCAGTACCGTCCAGGACATTCAAGTCTCTGGCAGCAGCAGCAGT
CATAATAGCGGCAGCAGAAGCTTGGGTGGCGAACGACCGGCTGTGCTGGA
AGAAGTATTGCACAAGGACGTGATTGCTGACTTCAACTGCCTTGGATCGG
GCGACGCGTTCGGGATTGTGGGCTGCGTAATTGCGTCTGTCTCCAAGGAC
CCGTTCTTTACCACCGAGGTTTCCCTCAAGGTCTGACCGCAGGCACCCTT
CCAAGGACCCCCTCAGCGTGAGAAAAAGCGCTGATGACTGTGATTACCTC
GCTGAGGACGGTCACCTCGCTGGAGATGCTCAAGGTGTACAGGAGGAGTC
GGCAGAGGGACCCGCCGCAGATATGGGTGCCGGTCCGATCAGTACCGTCC
AGGACATTCAAGTCTCTGGCAGCAGCAGCAGTCATAATAGCGGCAGCAGA
AGCTTGGGTGGCGAACGACCGGCTGTGCTGGAAGAAGTATTGCACAAGGA
CGTGATTGCTGACTTCAACTGCCTTGGATCGGGCGACGCGTTCGGGATTG
TGGGCTGCGTAATTGCGTCTGTCTCCAAGGACCCGTTCTTTACCACCGAG
GTTTCCCTCAAGTTGCCGACGTTCGAAGAGGTGTCAGATATGCTGACTTC
GTCGAAGGAGTACCCCCTGTTCGTGCAGCTTTGTCGACCGCCGCTCGTGT
TCACTCCCGAGCCCGAGTATCCTTCGGTAAAGTTGCTGACGACCCTGGCT
TTCACTAACCGCAACGTGGAGAAGGTTCACGGAGAGTACAGTTGCCGACG
TTCGAAGAGGTGTCAGATATGCTGACTTCGTCGAAGGAGTACCCCCTGTT
CGTGCAGCTTTGTCGACCGCCGCTCGTGTTCACTCCCGAGCCCGAGTATC
CTTCGGTAAAGTTGCTGACGACCCTGGCTTTCACTAACCGCAACGTGGAG
AAGGTTCACGGAGAGTACAGGTTTGGTGATCTGTTGGAGGATGACGGCAG
GGCTCGGTGGGTAGCAACAACCACGGCCGTGGCTTCAGACGTGGGGGATC
TTGGCACCAACATGCTAATCAGCCTCCCCGACTACCACGTGGTGGGCCTG
TACTCACTCACACAGGAAGAGGTTTGGTGATCTGTTGGAGGATGACGGCA
GGGCTCGGTGGGTAGCAACAACCACGGCCGTGGCTTCAGACGTGGGGGAT
CTTGGCACCAACATGCTAATCAGCCTCCCCGACTACCACGTGGTGGGCCT
GTACTCACTCACACAGGAAGAGGCGATGGCTCTTTTGGCGGGGTATCCCA
ACCGAGACGTATTTGTCTATGTGCATGGCTTCAACACCCCCTTCGGCTTC
GGCGTGCGGAGCGTGGTCGTCAAAGGAAGGGCATTCAGGAAAAGTCTTGG
TGTATGCCTAGCTTGGCCGTCTAATCCTCCTGGGGAGGGCGTCGGCTGGC
TCATCAAGCAGGCGATGGCTCTTTTGGCGGGGTATCCCAACCGAGACGTA
TTTGTCTATGTGCATGGCTTCAACACCCCCTTCGGCTTCGGCGTGCGGAG
CGTGGTCGTCAAAGGAAGGGCATTCAGGAAAAGTCTTGGTGTATGCCTAG
CTTGGCCGTCTAATCCTCCTGGGGAGGGCGTCGGCTGGCTCATCAAGCAG
GTGATGTCCACGTACGAGAGGCGCTACACGTATTGCGAGCACAACATGCA
CGCAACCATATTCCTCTTCCTCCAGGTGATGTCCACGTACGAGAGGCGCT
ACACGTATTGCGAGCACAACATGCACGCAACCATATTCCTCTTCCTCCAG
GTGGGGTTGGACATCAAGGCTGCGGCAGACTTAGGAGGCAAGATTTTGTG
CTGGAAGGGGCACTCTATGGGCTGCTATCTGCTGCTGAACGTGGTGGACC
GCCTGAGGTGGAAGGGTGAAAACTTGCAGCCGCTATTTCGACGAGTTATC
CTCGATGCTCCTGACGTGCCCACGTGGTTCTTCAGCTCCATGACCCAGGT
GGGGTTGGACATCAAGGCTGCGGCAGACTTAGGAGGCAAGATTTTGTGCT
GGAAGGGGCACTCTATGGGCTGCTATCTGCTGCTGAACGTGGTGGACCGC
CTGAGGTGGAAGGGTGAAAACTTGCAGCCGCTATTTCGACGAGTTATCCT
CGATGCTCCTGACGTGCCCACGTGGTTCTTCAGCTCCATGACCCAGGTGC
TAGCTGACAACGGCGTGGAAGTTTGTCACTACTTCAACCCGGAAGATAAA
GCCATCTACGCTTCGTGCTCTCGGCGTGCCCTCCAGCGACCCGTACCGGG
ACAGGACGCCATCGTTGCCCACCCCTTGGTGCAAGCAGTGCTGTGCGAGA
AAACCCGCAGGTGCTAGCTGACAACGGCGTGGAAGTTTGTCACTACTTCA
ACCCGGAAGATAAAGCCATCTACGCTTCGTGCTCTCGGCGTGCCCTCCAG
CGACCCGTACCGGGACAGGACGCCATCGTTGCCCACCCCTTGGTGCAAGC
AGTGCTGTGCGAGAAAACCCGCAGCTCGACCAGCATGAACCACGATTACG
GCCGGACGGATGGGCGTTGTTTGCTGGATCAGCGGGACTTCTTGGCCGCG
GAGCCGCCGGAACAGCGCGTCCTTGAAGAGAGGTTCTCCAGCGAAGGAAT
AACTTGCTGGCAACTCAAGACGTGGTAACTCGACCAGCATGAACCACGAT
TACGGCCGGACGGATGGGCGTTGTTTGCTGGATCAGCGGGACTTCTTGGC
CGCGGAGCCGCCGGAACAGCGCGTCCTTGAAGAGAGGTTCTCCAGCGAAG
GAATAACTTGCTGGCAACTCAAGACGTGGTAA
back to top