mRNA_H-elongata_contig144471.3052.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig144471.3052.1 vs. uniprot
Match: D8LBH4_ECTSI (COP9 signalosome complex subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBH4_ECTSI) HSP 1 Score: 206 bits (524), Expect = 3.870e-64 Identity = 103/120 (85.83%), Postives = 111/120 (92.50%), Query Frame = 1
Query: 1 ISVEHVAKATPTDNISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNVAVDYPLLRQISSICNQLPTMDGEHFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADRFMMAYGNRRAL 360
ISVEHVAKATPTD ISSIDLHAGAVSTSLRTLLARIEILRR L+ETK GN++VDYPLLRQISSICNQLPTMDG FSEEFMREFNDSLSV YLA VQKSAGS+NDLAD+FM A+G+RR +
Sbjct: 199 ISVEHVAKATPTDGISSIDLHAGAVSTSLRTLLARIEILRRFLEETKKGNISVDYPLLRQISSICNQLPTMDGAQFSEEFMREFNDSLSVAYLASVQKSAGSMNDLADKFMTAFGHRRPI 318
BLAST of mRNA_H-elongata_contig144471.3052.1 vs. uniprot
Match: A0A7S2B7N9_9STRA (COP9 signalosome complex subunit 6 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B7N9_9STRA) HSP 1 Score: 117 bits (294), Expect = 9.640e-30 Identity = 58/118 (49.15%), Postives = 76/118 (64.41%), Query Frame = 1
Query: 1 ISVEHVAKATPTDNISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNVAVDYPLLRQISSICNQLPTMDGEHFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADRFMMAYGNRR 354
I++E +AKATPTD ++S+DLH ++ SLRTL R + L L+ TK G V DY LLRQ+SSICNQLP +D +F+ E+ND L V YLA V KS+ SL DL D+ + R
Sbjct: 190 ITMERIAKATPTDGVASLDLHINSLGASLRTLNLRFDALLAFLKATKAGEVPTDYRLLRQVSSICNQLPAVDTAELKGDFITEYNDMLMVNYLASVTKSSASLGDLIDKHSAVVSHHR 307
BLAST of mRNA_H-elongata_contig144471.3052.1 vs. uniprot
Match: A0A7S2BCI8_9STRA (COP9 signalosome complex subunit 6 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BCI8_9STRA) HSP 1 Score: 103 bits (257), Expect = 3.120e-24 Identity = 50/111 (45.05%), Postives = 72/111 (64.86%), Query Frame = 1
Query: 19 AKATPTDNISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNVAVDYPLLRQISSICNQLPTMDGEHFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADRFMMAYGNR 351
AK + +++DLH VS+SL+TL +R L + L+ TK+G V DY LLRQ++S+CNQLP +D + S EF+ ++ND+L V YLA + K LNDLA++F M R
Sbjct: 202 AKEKAHEGEATLDLHMNTVSSSLKTLSSRASALVQYLEATKNGTVPTDYRLLRQVASVCNQLPAVDTDELSGEFVGDYNDTLMVNYLASITKGTNELNDLAEKFNMISTQR 312
BLAST of mRNA_H-elongata_contig144471.3052.1 vs. uniprot
Match: F0Y0C1_AURAN (Trehalase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0C1_AURAN) HSP 1 Score: 103 bits (258), Expect = 2.010e-23 Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 1
Query: 1 ISVEHVAKATPTDNISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNVAVDYPLLRQISSICNQLPTMDGEHFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADRFMM 336
IS+E VAK PTD S++D H AV TSLRTL +R+ +L L+ G D+ LLRQ+S +C+ LPT + + MR++ND+L V+YLA V K+A ++NDL+++FM+
Sbjct: 1000 ISMEIVAKTAPTDGESALDTHVEAVDTSLRTLGSRVAVLVDYLRAVAGGKAEPDFALLRQVSGLCDTLPTGGAPDQTRDLMRDYNDALMVSYLASVTKNANAVNDLSEKFML 1111
BLAST of mRNA_H-elongata_contig144471.3052.1 vs. uniprot
Match: A0A2P6NGP8_9EUKA (Phosphodiesterase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NGP8_9EUKA) HSP 1 Score: 102 bits (255), Expect = 5.070e-23 Identity = 47/120 (39.17%), Postives = 72/120 (60.00%), Query Frame = 1
Query: 1 ISVEHVAKATPT--DNISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNVAVDYPLLRQISSICNQLPTMDGEHFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADRFMMAYGNRR 354
ISV+H+A+ TP+ N S I H + S+ L R+ IL+ L+ K G +A D LLRQ+ S+CNQLP + + +F+ EFNDSL +TYLA + K +N++ D+F + Y ++
Sbjct: 181 ISVDHIARITPSGDSNTSQISTHLTGIHNSIGMLATRLRILKSFLEAVKSGKIAADPGLLRQLGSLCNQLPALHSDELKNDFIVEFNDSLLITYLASITKGTNGMNEMIDKFNVVYEKQK 300
BLAST of mRNA_H-elongata_contig144471.3052.1 vs. uniprot
Match: A0A7S2S2E8_9STRA (COP9 signalosome complex subunit 6 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2E8_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.660e-22 Identity = 50/120 (41.67%), Postives = 80/120 (66.67%), Query Frame = 1
Query: 1 ISVEHVAKATPTDNISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNVAVDYPLLRQISSICNQLPTMDGEHFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADRFMMAYGNRRAL 360
I++E V+KA+ T +SS+DLH +S+SLR+L +R +IL L+ D V VD+ LLR+I+S+CNQLP D + F+ +FND+L + +LA + KS+ S+++L+ +F A+ AL
Sbjct: 218 ITMEAVSKASTTAGVSSMDLHVQELSSSLRSLASRTQILVSYLKAIADQQVPVDHKLLREIASVCNQLPAADAQELQGAFLSDFNDTLLINHLALITKSSNSVSELSTKFS-AFSTTSAL 336
BLAST of mRNA_H-elongata_contig144471.3052.1 vs. uniprot
Match: A0A1Y1HNE5_KLENI (COP9 signalosome complex subunit 6 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HNE5_KLENI) HSP 1 Score: 97.1 bits (240), Expect = 7.020e-22 Identity = 47/117 (40.17%), Postives = 75/117 (64.10%), Query Frame = 1
Query: 1 ISVEHVAKATPTDNISS---IDLHAGAVSTSLRTLLARIEILRRLLQETKDGNVAVDYPLLRQISSICNQLPTMDGEHFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADRFMMAY 342
ISV+HVA+ TP+ S + H + ++++ L RI++L LL G + +D+ LLRQ+SS+ +LP +D HF EEF+ E+ND+L +TYLA + K +LN+L ++F +AY
Sbjct: 170 ISVDHVARITPSGGSSGATQLAAHLMGLHSAIKMLSRRIKVLHHLLLSFSRGELPLDHSLLRQVSSLVRRLPAIDSAHFREEFLTEYNDTLLMTYLAGITKGTSTLNELVEKFNIAY 286
BLAST of mRNA_H-elongata_contig144471.3052.1 vs. uniprot
Match: M4B700_HYAAE (COP9 signalosome complex subunit 6 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B700_HYAAE) HSP 1 Score: 96.3 bits (238), Expect = 1.550e-21 Identity = 49/112 (43.75%), Postives = 69/112 (61.61%), Query Frame = 1
Query: 1 ISVEHVAKATPTDNISSIDLHA--GAVSTSLRTLLARIEILRRLLQETKDGNVAVDYPLLRQISSICNQLPTMDGEHFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADRF 330
I+++H++K TP + S LH G V +++ L +I++L LQ K G +D+ LLR ISSICNQLP M EHF F EFND+L V+YLA + K ++N + DRF
Sbjct: 182 IAIDHISKITPIGDASKSSLHPYLGNVRDAVKMLDRQIDVLLCFLQAIKSGEAPMDHNLLRHISSICNQLPAMQSEHFDAAFTLEFNDALLVSYLATLTKGTTNVNTVVDRF 293
BLAST of mRNA_H-elongata_contig144471.3052.1 vs. uniprot
Match: A0A061R7N5_9CHLO (COP9 signalosome complex subunit 6 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R7N5_9CHLO) HSP 1 Score: 94.4 bits (233), Expect = 8.050e-21 Identity = 45/123 (36.59%), Postives = 76/123 (61.79%), Query Frame = 1
Query: 1 ISVEHVAKATPT---DNISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNVAVDYPLLRQISSICNQLPTMDGEHFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADRFMMAY--GNRR 354
I+V+ V K P+ D + + H G++ +L+ L++R+ +L +L++ K G D+ ++RQ+ S+ LP ++G+ F E+F+ ++NDSL V YLA + K LNDL DRF +A+ G RR
Sbjct: 178 IAVDQVTKLVPSGGADGSAQVSAHLGSLHAALKMLVSRLRLLLSVLRKMKGGEAVYDHAIVRQVVSLSRSLPAIEGKEFQEQFLTDYNDSLLVIYLASITKGTAVLNDLIDRFNLAFEKGTRR 300
BLAST of mRNA_H-elongata_contig144471.3052.1 vs. uniprot
Match: A0A139AQ14_GONPJ (COP9 signalosome complex subunit 6 n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AQ14_GONPJ) HSP 1 Score: 94.0 bits (232), Expect = 1.520e-20 Identity = 48/119 (40.34%), Postives = 75/119 (63.03%), Query Frame = 1
Query: 1 ISVEHVAKATPTDNISSIDLHAGAVS--TSLRTLLARIEILRRLLQETKDGNVAVDYPLLRQISSICNQLPTMDGEHFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADRFMMAYGNR 351
I+V+HVAKA + L A +S +++ L RI +L + +Q+ ++G + D+ LLRQISS+CN+LPT+DG+ F +EF+ + ND L + YLA + K A +N L +RF +A R
Sbjct: 178 IAVDHVAKAVAAEASEGSGLIAHLISQRNAIKMLQTRIRLLYQYVQDVQNGTLPRDHNLLRQISSLCNRLPTVDGQEFRKEFLTDQNDVLLIAYLAALTKGAADVNSLVERFNVAGSER 296 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144471.3052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig144471.3052.1 >prot_H-elongata_contig144471.3052.1 ID=prot_H-elongata_contig144471.3052.1|Name=mRNA_H-elongata_contig144471.3052.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp ISVEHVAKATPTDNISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNback to top mRNA from alignment at H-elongata_contig144471:533..1655- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig144471.3052.1 ID=mRNA_H-elongata_contig144471.3052.1|Name=mRNA_H-elongata_contig144471.3052.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1123bp|location=Sequence derived from alignment at H-elongata_contig144471:533..1655- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig144471:533..1655- >mRNA_H-elongata_contig144471.3052.1 ID=mRNA_H-elongata_contig144471.3052.1|Name=mRNA_H-elongata_contig144471.3052.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig144471:533..1655- (Himanthalia elongata Himel1 dioecious)back to top |