mRNA_H-elongata_contig144372.3047.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144372.3047.1
Unique NamemRNA_H-elongata_contig144372.3047.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig144372.3047.1 vs. uniprot
Match: D8LG60_ECTSI (Histone deactylase of possible bacterial origin with ankyrin repeats at the N-terminus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG60_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.910e-9
Identity = 40/66 (60.61%), Postives = 46/66 (69.70%), Query Frame = 3 
Query:   12 SGERPASAAPRLSTVTHIRGGRAGGGGGGVNSDGRVERRHVPSPPGEGSRKNEEMAVAEI*RHGSR 209
            +GER    A RLS VT +RGGR+G GGG     G V+RR  PSPPGEGSRK EEMAVAE+  + SR
Sbjct: 1019 AGER----AQRLSMVTPVRGGRSGAGGG----LGGVDRRLAPSPPGEGSRKREEMAVAELLANSSR 1076
[Close]
BLAST of mRNA_H-elongata_contig144372.3047.1 vs. uniprot
Match: A0A6H5K5H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H7_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.800e-5
Identity = 34/66 (51.52%), Postives = 39/66 (59.09%), Query Frame = 3 
Query:   12 SGERPASAAPRLSTVTHIRGGRAGGGGGGVNSDGRVERRHVPSPPGEGSRKNEEMAVAEI*RHGSR 209
            +GER    A RLS VT +RGG              V+RR  PSPPGEGSRK EEMAVAE+  + SR
Sbjct:  540 AGER----AQRLSMVTPVRGGXXXXXXXXXXXXXGVDRRLAPSPPGEGSRKREEMAVAELLANSSR 601
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144372.3047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LG60_ECTSI1.910e-960.61Histone deactylase of possible bacterial origin wi... [more]
A0A6H5K5H7_9PHAE2.800e-551.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144372contigH-elongata_contig144372:856..1658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size355
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144372.3047.1prot_H-elongata_contig144372.3047.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144372 856..1529 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929856.2882679-CDS-H-elongata_contig144372:855..10221622929856.2882679-CDS-H-elongata_contig144372:855..1022Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144372 856..1022 -
1691679184.97821-CDS-H-elongata_contig144372:855..10221691679184.97821-CDS-H-elongata_contig144372:855..1022Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144372 856..1022 -
1622929856.3144197-CDS-H-elongata_contig144372:1057..10801622929856.3144197-CDS-H-elongata_contig144372:1057..1080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144372 1058..1080 -
1691679184.9859078-CDS-H-elongata_contig144372:1057..10801691679184.9859078-CDS-H-elongata_contig144372:1057..1080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144372 1058..1080 -
1622929856.3532038-CDS-H-elongata_contig144372:1494..15291622929856.3532038-CDS-H-elongata_contig144372:1494..1529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144372 1495..1529 -
1691679184.9937506-CDS-H-elongata_contig144372:1494..15291691679184.9937506-CDS-H-elongata_contig144372:1494..1529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144372 1495..1529 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929856.3678298-UTR-H-elongata_contig144372:1529..16581622929856.3678298-UTR-H-elongata_contig144372:1529..1658Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144372 1530..1658 -
1691679185.0022738-UTR-H-elongata_contig144372:1529..16581691679185.0022738-UTR-H-elongata_contig144372:1529..1658Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144372 1530..1658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144372.3047.1

>prot_H-elongata_contig144372.3047.1 ID=prot_H-elongata_contig144372.3047.1|Name=mRNA_H-elongata_contig144372.3047.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
MCHRHRGRAHGRTKKWPWQKFSGMGLGDRLGDRLGAFRGGGMGRARAMDV
SKDMTMGMAMADPGVVRSRGGGGGG
back to top

mRNA from alignment at H-elongata_contig144372:856..1658-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144372.3047.1 ID=mRNA_H-elongata_contig144372.3047.1|Name=mRNA_H-elongata_contig144372.3047.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=803bp|location=Sequence derived from alignment at H-elongata_contig144372:856..1658- (Himanthalia elongata Himel1 dioecious)
CCCCGGTGGGTTCTGGAGAGAGGCCGGCGAGTGCGGCGCCGCGACTGAGC
ACCGTCACCCACATTCGTGGAGGGAGAGCCGGCGGCGGCGGCGGTGGCGT
CAACAGCGACGGCAGAGTCGAACGACGGCATGTGCCATCGCCACCGGGGG
AGGGCTCACGGAAGGTGGGTGACATTCGGGCTAGGAGAGCGGAGGAGTGA
GGTGCGGTGCGATGAGTCCCGTAGTAAGTCGGTGCACGCAAACAAGCGAA
TTAGCACCCTCATCGTCATCGTCATCGTCATCGTCATCATTACTGTCTTT
GTCATAGCTACCGTAGACATATTATAGATTATCGTCAGGATTTATTTCTA
TGATCTCTCTCCCCCTCCCCCCCCCTCCTGCCCTCCTCGCCTCTTCCTAA
CTTTGCAACAAATACCATTTATTTTTTATTTTTTGTTTTTTTCTTGTTTT
CTAGATCCGTGAGCGTGTGCGTGCAACCCTTTTGTCAATATTCTTGCCCG
TGACCTCGATATTTCTCCCCTTACCAACCAACCTCTCCTTCCCTCCCCCA
ACTTATCACCTGAAAACCTCACCCGCAGAACGAAGAAATGGCCGTGGCAG
AGCTCCTGGCGAACAGCAGCCGGGCTATCTGCCAAGAATTTAGCGGCATG
GGTCTAGGTGATCGACTAGGTGATCGATTAGGCGCCTTCCGAGGTGGTGG
TATGGGCAGAGCGAGAGCGATGGACGTGAGCAAAGACATGACCATGGGCA
TGGCCATGGCCGACCCAGGAGTGGTACGCTCCCGAGGCGGAGGTGGCGGA
GGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig144372:856..1658-

>mRNA_H-elongata_contig144372.3047.1 ID=mRNA_H-elongata_contig144372.3047.1|Name=mRNA_H-elongata_contig144372.3047.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig144372:856..1658- (Himanthalia elongata Himel1 dioecious)
ATGTGCCATCGCCACCGGGGGAGGGCTCACGGAAGATGTGCCATCGCCAC
CGGGGGAGGGCTCACGGAAGAACGAAGAAATGGCCGTGGCAGAAACGAAG
AAATGGCCGTGGCAGAAATTTAGCGGCATGGGTCTAGGTGATCGACTAGG
TGATCGATTAGGCGCCTTCCGAGGTGGTGGTATGGGCAGAGCGAGAGCGA
TGGACGTGAGCAAAGACATGACCATGGGCATGGCCATGGCCGACCCAGGA
GTGGTACGCTCCCGAGGCGGAGGTGGCGGAGGAAATTTAGCGGCATGGGT
CTAGGTGATCGACTAGGTGATCGATTAGGCGCCTTCCGAGGTGGTGGTAT
GGGCAGAGCGAGAGCGATGGACGTGAGCAAAGACATGACCATGGGCATGG
CCATGGCCGACCCAGGAGTGGTACGCTCCCGAGGCGGAGGTGGCGGAGGA
back to top