mRNA_H-elongata_contig144371.3046.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144371.3046.1
Unique NamemRNA_H-elongata_contig144371.3046.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig144371.3046.1 vs. uniprot
Match: D7FR13_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR13_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 2.800e-8
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   43 CKNEQCTRQPSFGIEGDRRASYCAEHKLPAMINVSS 150
            C++E C   P+FGIEGDRRA YCA+HKLP M+NV +
Sbjct:  860 CRHEGCQSHPNFGIEGDRRAVYCAKHKLPGMVNVKA 895
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144371.3046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FR13_ECTSI2.800e-863.89EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR13... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144371contigH-elongata_contig144371:318..850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144371.3046.1prot_H-elongata_contig144371.3046.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144371 318..832 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929856.196047-CDS-H-elongata_contig144371:317..4731622929856.196047-CDS-H-elongata_contig144371:317..473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144371 318..473 -
1691679184.9498577-CDS-H-elongata_contig144371:317..4731691679184.9498577-CDS-H-elongata_contig144371:317..473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144371 318..473 -
1622929856.2131636-CDS-H-elongata_contig144371:763..8321622929856.2131636-CDS-H-elongata_contig144371:763..832Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144371 764..832 -
1691679184.9573135-CDS-H-elongata_contig144371:763..8321691679184.9573135-CDS-H-elongata_contig144371:763..832Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144371 764..832 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929856.2298148-UTR-H-elongata_contig144371:832..8501622929856.2298148-UTR-H-elongata_contig144371:832..850Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144371 833..850 -
1691679184.9673524-UTR-H-elongata_contig144371:832..8501691679184.9673524-UTR-H-elongata_contig144371:832..850Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144371 833..850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144371.3046.1

>prot_H-elongata_contig144371.3046.1 ID=prot_H-elongata_contig144371.3046.1|Name=mRNA_H-elongata_contig144371.3046.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
MVDTRHPLCKNEQCTRQPSFGIEGDRRASYCAEHKLPAMINVSSRRCQHT
GCLRHPNFGFPGDRRATYCRCLES*
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mRNA from alignment at H-elongata_contig144371:318..850-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144371.3046.1 ID=mRNA_H-elongata_contig144371.3046.1|Name=mRNA_H-elongata_contig144371.3046.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=533bp|location=Sequence derived from alignment at H-elongata_contig144371:318..850- (Himanthalia elongata Himel1 dioecious)
ATAAAAAGGGTCGTCGGCATGGTAGACACAAGGCATCCGCTTTGCAAGAA
CGAGCAGTGCACTAGGCAGCCGAGCTTCGGCATTGAGGTGCGCCGATCTG
AAAAACAAACAAAAAAAACAAAAAGAAACAAATAAGAAACAGCATCACGT
TTTGTGGAGAGTATGGACTAGAAGCAAACATCATTTTGGTGCCACACATG
CCCGCCCACCCGCCCGGTGGGTGGGTGGGTGGGTGGTTTCGGAACGGCAT
ACTGTTAAGAGTGCGATTGATGAATGTGCTTTACAAAAGAGAGCGCGAGC
TACAGCCGCCTCCTCGATTGACCCTCTCTGGTTACCGCTCACGATGAGGC
GCGGGCGGGTGATCGGTGCGCGCGCAGGGTGATCGACGAGCAAGCTACTG
CGCAGAGCACAAGCTGCCCGCGATGATCAATGTCTCGAGCCGGCGCTGTC
AGCACACGGGCTGCCTGAGACATCCAAACTTCGGGTTTCCGGGAGATCGA
CGGGCGACGTACTGCAGGTGCCTCGAGAGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig144371:318..850-

>mRNA_H-elongata_contig144371.3046.1 ID=mRNA_H-elongata_contig144371.3046.1|Name=mRNA_H-elongata_contig144371.3046.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig144371:318..850- (Himanthalia elongata Himel1 dioecious)
ATGGTAGACACAAGGCATCCGCTTTGCAAGAACGAGCAGTGCACTAGGCA
GCCGAGCTTCGGCATTGAGATGGTAGACACAAGGCATCCGCTTTGCAAGA
ACGAGCAGTGCACTAGGCAGCCGAGCTTCGGCATTGAGGGTGATCGACGA
GCAAGCTACTGCGCAGAGCACAAGCTGCCCGCGATGATCAATGTCTCGAG
CCGGCGCTGTCAGCACACGGGCTGCCTGAGACATCCAAACTTCGGGTTTC
CGGGAGATCGACGGGCGACGTACTGCAGGTGCCTCGAGAGTTGAGGTGAT
CGACGAGCAAGCTACTGCGCAGAGCACAAGCTGCCCGCGATGATCAATGT
CTCGAGCCGGCGCTGTCAGCACACGGGCTGCCTGAGACATCCAAACTTCG
GGTTTCCGGGAGATCGACGGGCGACGTACTGCAGGTGCCTCGAGAGTTGA
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