mRNA_H-elongata_contig144319.3044.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144319.3044.1
Unique NamemRNA_H-elongata_contig144319.3044.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig144319.3044.1 vs. uniprot
Match: D7G0T9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T9_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.640e-19
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 SMTIFKLVDRETGEESVEYAKDMVFQRPCEGCQHLKSCIVAGHPLLDWVAEGNDSR 168
            +MTIFKLVDR TGEESVEY+ DM+FQRPC  C HLK+CI+ GH L DW  EG   R
Sbjct:   56 TMTIFKLVDRNTGEESVEYSPDMIFQRPCASCIHLKTCILGGHELTDWTPEGGRGR 111
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144319.3044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0T9_ECTSI2.640e-1967.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144319contigH-elongata_contig144319:587..1519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_001520.1
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size168
Cds size165
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144319.3044.1prot_H-elongata_contig144319.3044.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144319 587..1516 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929856.0138252-CDS-H-elongata_contig144319:586..6461622929856.0138252-CDS-H-elongata_contig144319:586..646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144319 587..646 -
1691679184.8792245-CDS-H-elongata_contig144319:586..6461691679184.8792245-CDS-H-elongata_contig144319:586..646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144319 587..646 -
1622929856.0283763-CDS-H-elongata_contig144319:1411..15161622929856.0283763-CDS-H-elongata_contig144319:1411..1516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144319 1412..1516 -
1691679184.8903573-CDS-H-elongata_contig144319:1411..15161691679184.8903573-CDS-H-elongata_contig144319:1411..1516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144319 1412..1516 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929856.0478494-UTR-H-elongata_contig144319:1516..15191622929856.0478494-UTR-H-elongata_contig144319:1516..1519Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144319 1517..1519 -
1691679184.90012-UTR-H-elongata_contig144319:1516..15191691679184.90012-UTR-H-elongata_contig144319:1516..1519Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144319 1517..1519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144319.3044.1

>prot_H-elongata_contig144319.3044.1 ID=prot_H-elongata_contig144319.3044.1|Name=mRNA_H-elongata_contig144319.3044.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
MTIFKLVDRETGEESVEYAKDMVFQRPCEGCQHLKSCIVAGHPLLDWVAE
GNDSR
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mRNA from alignment at H-elongata_contig144319:587..1519-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144319.3044.1 ID=mRNA_H-elongata_contig144319.3044.1|Name=mRNA_H-elongata_contig144319.3044.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=933bp|location=Sequence derived from alignment at H-elongata_contig144319:587..1519- (Himanthalia elongata Himel1 dioecious)
TCCATGACCATCTTCAAGCTGGTGGACCGGGAGACAGGCGAGGAGAGTGT
CGAGTACGCGAAGGATATGGTGTTCCAGAGGCCCTGCGAAGGATGTCAGC
ATCTCAAGGTGAAGATGCAGCAGCACAGTGCCGCAAGGAGGAAAATACTA
TAATACTACCTGTACCCGACTATACTGTTTTACCCACTCGCGCGGAGTAA
AGCCGGTAAAGAGCAGCCCAGTTTCGTTGTAAACGCTTCAGTTATTCTAC
CAACTGCGCTAGTAGCAGACACTTTTTTTTTCATTGTTTTATTTTTATTT
GCGATCCGCCGGTGCGGCGCGATCAATAAAAAAAGTCATGACGTCATGCG
TGCGCGATAAATCCCAACATTAAGATGTCATGGCTGCGCTGTTGTGTCGG
AAGTACCACGGTCCGGCGTGCTACGGACCTTGTGTGCGTGCGTGCGTCTT
GTTAAAGGGTTGCGTTCGGACTCTCGTTTGGCTGATGAGCATGATTTATC
TTCCGATAGGGCAAGTGTGGTACCTCTTGAAGTCGAGATGGTAAAAGGCG
CAGCCGACTGACTGCTCCCGAGGGCACAGCGTCATGGTGCCCTCGACCTT
CCCTCCGCCCTACGCTCGCCGATCATAGAAGGCAGCACGGCCACTCGATG
CCGATGTCAAGTCGAATAATAAGCGGACAACAATGTCGAGTAGCCTGTTG
GGTGCAGCCCGTACGGACATGAGACGAGTTTGCTGCATCCGTGACCCCCG
CTGTGTCTTCCGTTTCGGCCCTTCGCCCGCCCACCCCCACCCTCCGTTCC
GTCTACACCGTCTCCCATGACGTCATTCGCTATTCCTTGACAACACGCCT
CGCCGATGAATCCTGGACTCCAGTCGTGCATAGTGGCCGGACACCCTCTT
CTGGACTGGGTCGCCGAGGGAAACGATTCCCGA
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Coding sequence (CDS) from alignment at H-elongata_contig144319:587..1519-

>mRNA_H-elongata_contig144319.3044.1 ID=mRNA_H-elongata_contig144319.3044.1|Name=mRNA_H-elongata_contig144319.3044.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig144319:587..1519- (Himanthalia elongata Himel1 dioecious)
ATGACCATCTTCAAGCTGGTGGACCGGGAGACAGGCGAGGAGAGTGTCGA
GTACGCGAAGGATATGGTGTTCCAGAGGCCCTGCGAAGGATGTCAGCATC
TCAAGATGACCATCTTCAAGCTGGTGGACCGGGAGACAGGCGAGGAGAGT
GTCGAGTACGCGAAGGATATGGTGTTCCAGAGGCCCTGCGAAGGATGTCA
GCATCTCAAGTCGTGCATAGTGGCCGGACACCCTCTTCTGGACTGGGTCG
CCGAGGGAAACGATTCCCGATCGTGCATAGTGGCCGGACACCCTCTTCTG
GACTGGGTCGCCGAGGGAAACGATTCCCGA
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