mRNA_H-elongata_contig14431.3043.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14431.3043.1
Unique NamemRNA_H-elongata_contig14431.3043.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14431.3043.1 vs. uniprot
Match: D8LFL1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFL1_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 2.320e-20
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    1 MGEDRLEFPKCVTSSSAEGRTWFARGWLHVLNFNHEEGIECFKECLRVDDTCLMALWGI 177
            MGE  L FP+ +T S+  GR WFARGW+H+LN+NHEE  ECFK C  VD  C MA WGI
Sbjct:   20 MGEGNLRFPQIITVSTDAGRAWFARGWMHMLNYNHEEAAECFKTCTEVDPRCAMAFWGI 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14431.3043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFL1_ECTSI2.320e-2061.02Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14431contigH-elongata_contig14431:1..177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue5.7e-17
Seed eggNOG ortholog2880.D8LFL1
EggNOG free text desc.tpr domain protein
EggNOG OGs28MP5@1,2QU74@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size177
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929855.9710865-CDS-H-elongata_contig14431:0..1771622929855.9710865-CDS-H-elongata_contig14431:0..177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14431 1..177 -
1691679184.8659885-CDS-H-elongata_contig14431:0..1771691679184.8659885-CDS-H-elongata_contig14431:0..177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14431 1..177 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14431.3043.1prot_H-elongata_contig14431.3043.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14431 1..177 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14431.3043.1

>prot_H-elongata_contig14431.3043.1 ID=prot_H-elongata_contig14431.3043.1|Name=mRNA_H-elongata_contig14431.3043.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
MGEDRLEFPKCVTSSSAEGRTWFARGWLHVLNFNHEEGIECFKECLRVDD
TCLMALWGI
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mRNA from alignment at H-elongata_contig14431:1..177-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14431.3043.1 ID=mRNA_H-elongata_contig14431.3043.1|Name=mRNA_H-elongata_contig14431.3043.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig14431:1..177- (Himanthalia elongata Himel1 dioecious)
ATGGGCGAGGACAGACTAGAGTTCCCCAAATGTGTCACATCGTCCAGCGC
TGAGGGTCGTACGTGGTTTGCCCGCGGCTGGTTGCACGTCCTGAACTTTA
ACCACGAGGAAGGAATTGAGTGCTTCAAGGAGTGCCTCCGTGTAGACGAC
ACATGCCTCATGGCGCTTTGGGGCATC
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Coding sequence (CDS) from alignment at H-elongata_contig14431:1..177-

>mRNA_H-elongata_contig14431.3043.1 ID=mRNA_H-elongata_contig14431.3043.1|Name=mRNA_H-elongata_contig14431.3043.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig14431:1..177- (Himanthalia elongata Himel1 dioecious)
ATGGGCGAGGACAGACTAGAGTTCCCCAAATGTGTCACATCGTCCAGCGC
TGAGGGTCGTACGTGGTTTGCCCGCGGCTGGTTGCACGTCCTGAACTTTA
ACCACGAGGAAGGAATTGAGTGCTTCAAGGAGTGCCTCCGTGTAGACGAC
ACATGCCTCATGGCGCTTTGGGGCATCATGGGCGAGGACAGACTAGAGTT
CCCCAAATGTGTCACATCGTCCAGCGCTGAGGGTCGTACGTGGTTTGCCC
GCGGCTGGTTGCACGTCCTGAACTTTAACCACGAGGAAGGAATTGAGTGC
TTCAAGGAGTGCCTCCGTGTAGACGACACATGCCTCATGGCGCTTTGGGG
CATC
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