mRNA_H-elongata_contig14429.3039.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14429.3039.1
Unique NamemRNA_H-elongata_contig14429.3039.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14429.3039.1 vs. uniprot
Match: D7FK87_ECTSI (Similar to Tyrosyl-tRNA synthetase, cytoplasmic (Tyrosyl--tRNA ligase) (TyrRS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK87_ECTSI)

HSP 1 Score: 288 bits (738), Expect = 1.780e-91
Identity = 166/281 (59.07%), Postives = 200/281 (71.17%), Query Frame = 3 
Query:  273 SLISVDVISPREVALDLAPLVPCARSSYTVKWFLKDDPIIFDQATAALQSRVELTNLSPASSYVALVRRT----------ESREASAARVEFSTPEAEGNVTGEMMELSRLEIRVGRCVEINKHPNADSLYVEKVDFGEGEPR-------TVVSGLVGYISVEEMRDRLVVGLCNLPPRTMRGVESSGMLLCASNEDHTRVDPLSPPKEANVGELITFAGVMSAPAPSGSAAARAWSAAMEGMMTTAPD----GVASWEDLAMRVVAGGACTASIV-GRVR 1049
            S  +  V+S RE  ++L PL       Y+VKWF +D+P IFDQATA+LQSR+ L++LSP + YVA+VRRT          E+ + +A  + FSTPEAEGN +GEMMELSRLEIRVGRC+E +KHP+ADSLYVE VDFGEGEPR       T+VS LV Y+   EMR R+VVGLCNLP R MRGV SSGMLLCASN+DH+ VDPLSPP+ A +GELITF  V+SAPAP  S A+RAWSA MEGM T        GVA W+   M + + GACT+SI  GRVR
Sbjct:   15 SSAAASVVSAREAVVELPPLGGDGVG-YSVKWFEEDNPAIFDQATASLQSRLVLSDLSPGTEYVAVVRRTATAAAAAPAGEAGDNAARELRFSTPEAEGNASGEMMELSRLEIRVGRCLECSKHPDADSLYVETVDFGEGEPRCLGPVDKTIVSRLVAYVPENEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITFESVLSAPAPPSSGASRAWSATMEGMKTAEATADGVGVAGWDGRPM-LTSAGACTSSIAAGRVR 293
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BLAST of mRNA_H-elongata_contig14429.3039.1 vs. uniprot
Match: A0A6H5KCD4_9PHAE (tRNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD4_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 3.680e-67
Identity = 116/170 (68.24%), Postives = 134/170 (78.82%), Query Frame = 3 
Query:  555 MMELSRLEIRVGRCVEINKHPNADSLYVEKVDFGEGEPRTVVSGLVGYISVEEMRDRLVVGLCNLPPRTMRGVESSGMLLCASNEDHTRVDPLSPPKEANVGELITFAGVMSAPAPSGSAAARAWSAAMEGMMTTAPD----GVASWEDLAMRVVAGGACTASIV-GRVR 1049
            MMELSRLEIRVGRC+E +KHP+ADSLYVE +DFGEGEPRT+VSGLV Y+  +EMR R+VVGLCNLP R MRGV SSGMLLCASN+DH+ VDPLSPP+ A +GELITF GV+SAPAP  S A+RAWSA  EGM T        GVA W+   M + + GACT+SI  GRVR
Sbjct:    1 MMELSRLEIRVGRCLECSKHPDADSLYVETIDFGEGEPRTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITFEGVLSAPAPPSSGASRAWSATREGMKTAEATADGVGVAGWDGRPM-LTSAGACTSSIAAGRVR 169
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BLAST of mRNA_H-elongata_contig14429.3039.1 vs. uniprot
Match: A0A7S0FZY8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0FZY8_9RHOD)

HSP 1 Score: 172 bits (437), Expect = 9.710e-47
Identity = 115/259 (44.40%), Postives = 150/259 (57.92%), Query Frame = 3 
Query:  273 SLISVDVISPREVALDLAPLVPCARSS--YTVKWFLKDDPIIFDQATAALQSRVELTNLSPASSYVALVRRTESRE----ASAARVEFSTPEAEGNVTGE------MMELSRLEIRVGRCVEINKHPNADSLYVEKVDFGEGEPRTVVSGLVGYISVEEMRDRLVVGLCNLPPRTMRGVESSGMLLCASNEDHTRVDPLSPPKEANVGELITFAGVMSAPAPSGSAAARAWSAAMEGMMTTAPDGVASWEDLAMRVVAG 1013
            ++ S D IS + + L    L   A  S  Y V +    +P  F   T   +S V L  LSP SSY   +   +S++    AS   +   TPE+ G  + +      + ELSRLEIR G  V+  KHP AD+LYVE +D GE EPRT+VSGLV ++S EE+  R VV LCNL PRTMRG+ S GMLLCASN DH+ VDPLSPP+E   GELITF G  SAP   G+ A +A+    + + T   DG+A ++D A +   G
Sbjct:   23 TMCSADNISFQNIGLGSVLLSWPASGSRAYRVAYKSDSNPASFRTVT---RSSVILKGLSPGSSYDMSISELDSKKLLSRASFTTMSAETPESAGAESEKQAEDLPLTELSRLEIRAGTVVQCKKHPEADTLYVETIDVGEQEPRTIVSGLVKFLSEEELTGRRVVVLCNLKPRTMRGIISQGMLLCASNADHSEVDPLSPPEECGNGELITFDGHKSAPIDPGNRATKAFDRVADDLSTN-EDGIAQYQDAAFKTPFG 277
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BLAST of mRNA_H-elongata_contig14429.3039.1 vs. uniprot
Match: A0A2V3IUX7_9FLOR (Putative methionine--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUX7_9FLOR)

HSP 1 Score: 166 bits (421), Expect = 1.550e-44
Identity = 91/165 (55.15%), Postives = 115/165 (69.70%), Query Frame = 3 
Query:  555 MMELSRLEIRVGRCVEINKHPNADSLYVEKVDFGEGEPRTVVSGLVGYISVEEMRDRLVVGLCNLPPRTMRGVESSGMLLCASNEDHTRVDPLSPPKEANVGELITFAGVMSAPAPSGSAAARAWSAAMEGMMTTAPDGVASWEDLAMRVVAGGACTA-SIVGRV 1046
            + ELSRLEIRVG+ +E  KHP+AD+LYVEKVD GE EPRT+VSGLV YI +E+M  R VV LCNL PR MRGV S GMLLCASNEDHT VDPL  P++  +GEL+TF G  SAP    + A +A+    +G+ T    GVA +ED+     AG   +A +++G +
Sbjct:  115 LTELSRLEIRVGKIIECEKHPDADTLYVEKVDVGEEEPRTIVSGLVKYIPLEKMVGRSVVVLCNLKPRAMRGVTSHGMLLCASNEDHTVVDPLCAPQDTPIGELVTFEGHKSAPIDPSNRATKAFDRVADGLSTNEA-GVAMFEDVPFSTSAGPCFSAENVIGSI 278
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BLAST of mRNA_H-elongata_contig14429.3039.1 vs. uniprot
Match: A0A7S0ZE83_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZE83_9RHOD)

HSP 1 Score: 163 bits (412), Expect = 8.490e-44
Identity = 85/153 (55.56%), Postives = 109/153 (71.24%), Query Frame = 3 
Query:  555 MMELSRLEIRVGRCVEINKHPNADSLYVEKVDFGEGEPRTVVSGLVGYISVEEMRDRLVVGLCNLPPRTMRGVESSGMLLCASNEDHTRVDPLSPPKEANVGELITFAGVMSAPAPSGSAAARAWSAAMEGMMTTAPDGVASWEDLAMRVVAG 1013
            + ELSRLEIRVG+ VE  +HP+AD+LYVEKVD GE EPRT+VSGLV ++S EE+  R V+ LCNL PR MRG++S GMLLCASNEDHT+VDPL+ P +A +G LITF G  +AP  +G+ A++A+        T A DG+A +        AG
Sbjct:   68 LTELSRLEIRVGKVVECERHPDADTLYVEKVDVGEDEPRTIVSGLVNFMSQEELNGRTVIVLCNLKPRAMRGIKSHGMLLCASNEDHTKVDPLTAPPDAAIGSLITFEGHRAAPMDAGNRASKAFDKVASEFNTDA-DGIARFNATPFMTEAG 219
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BLAST of mRNA_H-elongata_contig14429.3039.1 vs. uniprot
Match: A0A7S1TKX4_9RHOD (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TKX4_9RHOD)

HSP 1 Score: 157 bits (396), Expect = 2.670e-40
Identity = 89/161 (55.28%), Postives = 108/161 (67.08%), Query Frame = 3 
Query:  525 PEAEGNVTG----EMMELSRLEIRVGRCVEINKHPNADSLYVEKVDFGEGEPRTVVSGLVGYISVEEMRDRLVVGLCNLPPRTMRGVESSGMLLCASNEDHTRVDPLSPPKEANVGELITFAGVMSAPAPSGSAAARAWSAAMEGMMTTAPDGVASWEDLA 995
            P  EG V       + E SRLEIRVGR +E  KHP+AD+LYVEKVD GE E RT+VSGLV Y+ ++EM  R VV LCNL PR MRGV S GMLLCASNEDHT VDPL+ P++  +G LIT  G  SAP  +G+ A++A+   +     T  DG+A  ED A
Sbjct:  156 PAGEGGVDSGNDAPVTEFSRLEIRVGRILECEKHPDADTLYVEKVDVGEPETRTIVSGLVKYVPLDEMIGRTVVVLCNLKPRAMRGVTSFGMLLCASNEDHTEVDPLTAPEDTPIGTLITAPGHRSAPVEAGNRASKAFDR-VAAQFRTDGDGIAYVEDAA 315
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BLAST of mRNA_H-elongata_contig14429.3039.1 vs. uniprot
Match: A0A5J4Z2W6_PORPP (Putative methionine--tRNA ligase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2W6_PORPP)

HSP 1 Score: 153 bits (387), Expect = 7.440e-40
Identity = 81/154 (52.60%), Postives = 108/154 (70.13%), Query Frame = 3 
Query:  555 MMELSRLEIRVGRCVEINKHPNADSLYVEKVDFG-EGEPRTVVSGLVGYISVEEMRDRLVVGLCNLPPRTMRGVESSGMLLCASNEDHTRVDPLSPPKEANVGELITFAGVMSAPAPSGSAAARAWSAAMEGMMTTAPDGVASWEDLAMRVVAG 1013
            + ELSRLEIRVG+ ++  KHP ADSLYVE+VD G E   R +VSGLV ++ +EEM DR V+ LCNL PR MRG+ S GMLLCASNEDH++VDPL+ P+   +G L+TF G  S PAP+G+ A++A+    + + T A  GVA +E +     +G
Sbjct:   92 LTELSRLEIRVGKIIKCEKHPEADSLYVEEVDVGDESGARVIVSGLVSFVPLEEMVDRTVIVLCNLKPRNMRGISSHGMLLCASNEDHSQVDPLTAPEGVPIGALVTFEGHRSEPAPAGNRASKAFDKVAKSLRTDAT-GVAMFEQVPFATPSG 244
[Close]
BLAST of mRNA_H-elongata_contig14429.3039.1 vs. uniprot
Match: D7FMW6_ECTSI (Endothelial monocyte-activating polypeptide II pro-EMAP II family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW6_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 7.650e-40
Identity = 75/131 (57.25%), Postives = 100/131 (76.34%), Query Frame = 3 
Query:  546 TGEMMELSRLEIRVGRCVEINKHPNADSLYVEKVDFGEGE---PRTVVSGLVGYISVEEMRDRLVVGLCNLPPRTMRGVESSGMLLCASNEDHTRVDPLSPPKEANVGELITFAGVMSAPAPSGSAAARAW 929
            TGE+ EL+RLEIR+G+ VEI +HP+ADSLYVEKVD G+GE   PRT+VSGLV +    ++  R VV LCNL P  M+GV S+GMLLC+SNEDH++V+PL PP+   +GEL+TF G + +P  +G+ A +AW
Sbjct:   86 TGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGQGEEEGPRTIVSGLVNFCEESDLLGRDVVVLCNLKPVNMKGVTSAGMLLCSSNEDHSKVEPLCPPEGVPLGELVTFDGHLPSPVDAGNRAGKAW 216
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BLAST of mRNA_H-elongata_contig14429.3039.1 vs. uniprot
Match: A0A7S2V4I0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4I0_9STRA)

HSP 1 Score: 151 bits (382), Expect = 2.840e-39
Identity = 73/116 (62.93%), Postives = 90/116 (77.59%), Query Frame = 3 
Query:  549 GEMMELSRLEIRVGRCVEINKHPNADSLYVEKVDFGEGEPRTVVSGLVGYISVEEMRDRLVVGLCNLPPRTMRGVESSGMLLCASNEDHTRVDPLSPPKEANVGELITFAGVMSAP 896
            GE+ E SRLEIRVG+ V+++ HP+AD LYVEK+D GE EPRT+VSGLV Y+  E++ DR VV L NL PR MRG+ S GMLLCASNEDH++V PLSPP+ +  GELIT  G +S P
Sbjct:   81 GELNEFSRLEIRVGKIVDVSVHPDADGLYVEKIDCGEDEPRTIVSGLVKYLKAEDLLDRSVVVLANLKPRAMRGITSHGMLLCASNEDHSQVVPLSPPESSVPGELITVEGTLSQP 196
[Close]
BLAST of mRNA_H-elongata_contig14429.3039.1 vs. uniprot
Match: A0A835YNH3_9STRA (Endothelial monocyte-activating polypeptide II pro-EMAP II family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH3_9STRA)

HSP 1 Score: 150 bits (379), Expect = 7.510e-39
Identity = 80/151 (52.98%), Postives = 107/151 (70.86%), Query Frame = 3 
Query:  549 GEMMELSRLEIRVGRCVEINKHPNADSLYVEKVDFGE-GEPRTVVSGLVGYISVEEMRDRLVVGLCNLPPRTMRGVESSGMLLCASNEDHTRVDPLSPPKEANVGELITFAGVMSAPAPSGSAAARAWSAAMEGMMTTAPDGVASWEDLAM 998
            G++ EL+RLE+RVGR VEI +HP+AD LYVEK+D GE   PRT+VSGLV Y S  ++ +R VV L NL P  MRGVES+GM+LC+SN DHT+V PL PP+   +GEL+TF G ++AP  +G+ A +AW    +  +    DGVA + D A+
Sbjct:   75 GQLTELARLEMRVGRIVEIGRHPDADGLYVEKIDIGEPAGPRTIVSGLVAYCSEADLLNRDVVILANLKPVNMRGVESAGMVLCSSNADHTQVAPLVPPEGTPLGELVTFEGHLAAPVEAGNRAVKAWKKVAK-TVAVGEDGVARFTDEAL 224
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14429.3039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK87_ECTSI1.780e-9159.07Similar to Tyrosyl-tRNA synthetase, cytoplasmic (T... [more]
A0A6H5KCD4_9PHAE3.680e-6768.24tRNA-binding domain-containing protein n=1 Tax=Ect... [more]
A0A7S0FZY8_9RHOD9.710e-4744.40Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A2V3IUX7_9FLOR1.550e-4455.15Putative methionine--tRNA ligase n=1 Tax=Gracilari... [more]
A0A7S0ZE83_9RHOD8.490e-4455.56Hypothetical protein n=2 Tax=Timspurckia oligopyre... [more]
A0A7S1TKX4_9RHOD2.670e-4055.28Hypothetical protein n=2 Tax=Compsopogon caeruleus... [more]
A0A5J4Z2W6_PORPP7.440e-4052.60Putative methionine--tRNA ligase n=1 Tax=Porphyrid... [more]
D7FMW6_ECTSI7.650e-4057.25Endothelial monocyte-activating polypeptide II pro... [more]
A0A7S2V4I0_9STRA2.840e-3962.93Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YNH3_9STRA7.510e-3952.98Endothelial monocyte-activating polypeptide II pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14429contigH-elongata_contig14429:2686..5836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score293.9
Seed ortholog evalue9.2e-77
Seed eggNOG ortholog2880.D7FK87
Preferred nameYARS
KEGG rclassRC00055,RC00523
KEGG koko:K01866
KEGG ReactionR02918
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000049,GO:0001664,GO:0002682,GO:0002685,GO:0002688,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004831,GO:0005102,GO:0005126,GO:0005153,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006437,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006915,GO:0006935,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009605,GO:0009966,GO:0009987,GO:0010467,GO:0010469,GO:0010646,GO:0010758,GO:0012501,GO:0016070,GO:0016604,GO:0016874,GO:0016875,GO:0017101,GO:0017102,GO:0019538,GO:0019752,GO:0023051,GO:0030334,GO:0030545,GO:0031974,GO:0031981,GO:0032101,GO:0032879,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034660,GO:0040011,GO:0040012,GO:0042056,GO:0042221,GO:0042330,GO:0042379,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045236,GO:0046483,GO:0048018,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0050918,GO:0050920,GO:0051270,GO:0051716,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0098772,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1905521,GO:2000145
EggNOG free text desc.tRNA binding
EggNOG OGsCOG0143@1,KOG2241@2759
EC6.1.1.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-17_003170.1
Exons6
Model size1405
Cds size966
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14429.3039.1prot_H-elongata_contig14429.3039.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14429 2772..5483 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929855.4665153-UTR-H-elongata_contig14429:2685..27711622929855.4665153-UTR-H-elongata_contig14429:2685..2771Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14429 2686..2771 +
1691679184.6335673-UTR-H-elongata_contig14429:2685..27711691679184.6335673-UTR-H-elongata_contig14429:2685..2771Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14429 2686..2771 +
1622929855.5819242-UTR-H-elongata_contig14429:5483..58361622929855.5819242-UTR-H-elongata_contig14429:5483..5836Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14429 5484..5836 +
1691679184.7303598-UTR-H-elongata_contig14429:5483..58361691679184.7303598-UTR-H-elongata_contig14429:5483..5836Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14429 5484..5836 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929855.4816554-CDS-H-elongata_contig14429:2771..28291622929855.4816554-CDS-H-elongata_contig14429:2771..2829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14429 2772..2829 +
1691679184.6467788-CDS-H-elongata_contig14429:2771..28291691679184.6467788-CDS-H-elongata_contig14429:2771..2829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14429 2772..2829 +
1622929855.4976797-CDS-H-elongata_contig14429:3255..35121622929855.4976797-CDS-H-elongata_contig14429:3255..3512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14429 3256..3512 +
1691679184.6568258-CDS-H-elongata_contig14429:3255..35121691679184.6568258-CDS-H-elongata_contig14429:3255..3512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14429 3256..3512 +
1622929855.514603-CDS-H-elongata_contig14429:3743..38721622929855.514603-CDS-H-elongata_contig14429:3743..3872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14429 3744..3872 +
1691679184.666858-CDS-H-elongata_contig14429:3743..38721691679184.666858-CDS-H-elongata_contig14429:3743..3872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14429 3744..3872 +
1622929855.5274506-CDS-H-elongata_contig14429:4153..42931622929855.5274506-CDS-H-elongata_contig14429:4153..4293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14429 4154..4293 +
1691679184.686598-CDS-H-elongata_contig14429:4153..42931691679184.686598-CDS-H-elongata_contig14429:4153..4293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14429 4154..4293 +
1622929855.5475616-CDS-H-elongata_contig14429:4628..47781622929855.5475616-CDS-H-elongata_contig14429:4628..4778Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14429 4629..4778 +
1691679184.7089088-CDS-H-elongata_contig14429:4628..47781691679184.7089088-CDS-H-elongata_contig14429:4628..4778Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14429 4629..4778 +
1622929855.5656552-CDS-H-elongata_contig14429:5251..54831622929855.5656552-CDS-H-elongata_contig14429:5251..5483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14429 5252..5483 +
1691679184.717142-CDS-H-elongata_contig14429:5251..54831691679184.717142-CDS-H-elongata_contig14429:5251..5483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14429 5252..5483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14429.3039.1

>prot_H-elongata_contig14429.3039.1 ID=prot_H-elongata_contig14429.3039.1|Name=mRNA_H-elongata_contig14429.3039.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=322bp
MSASRILLLVAFCSLKISAGFVVIRDSLISISSSTARGSRAHGAARAASS
PSVTVADAPVMPSLISVDVISPREVALDLAPLVPCARSSYTVKWFLKDDP
IIFDQATAALQSRVELTNLSPASSYVALVRRTESREASAARVEFSTPEAE
GNVTGEMMELSRLEIRVGRCVEINKHPNADSLYVEKVDFGEGEPRTVVSG
LVGYISVEEMRDRLVVGLCNLPPRTMRGVESSGMLLCASNEDHTRVDPLS
PPKEANVGELITFAGVMSAPAPSGSAAARAWSAAMEGMMTTAPDGVASWE
DLAMRVVAGGACTASIVGRVR*
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mRNA from alignment at H-elongata_contig14429:2686..5836+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14429.3039.1 ID=mRNA_H-elongata_contig14429.3039.1|Name=mRNA_H-elongata_contig14429.3039.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3151bp|location=Sequence derived from alignment at H-elongata_contig14429:2686..5836+ (Himanthalia elongata Himel1 dioecious)
CGGTGAAGCCGTCCATCTTATTGTCACCATATTGCACAGCTTGACGCCCA
AACTCCAAACATAAACACCTCTCGGCCAGACTGCCCATGTCAGCGTCTCG
GATTCTACTGCTGGTGGCATTCTGTAGTCTAAAAATATCGGCTGGTGAGC
GTGTTTGGAGGATATTCGTGTGAGTCTAACCATGCGGGTACCCGTTGGTC
GATCGTGCTTTTTCCTTTCATGAACAACGTGCGTGCAAACGAGACCTTCC
CCACAAGAGCGAATTCTATTTGGCAACTACTCCTAGGGAATATTAACACC
AGAGGACTGACGAACGTTCGGTGTTGACCTCCAGTGCAGATATTATGCGG
GTTTGAATGACAGCGCGTATGTTACTCTTTATTATTAAGAGAAAGTGTCC
TTCCAGGGGGATTACCAAGAATCCCTTTATCTGCATGAGTTGACAGCCCC
ATGGTACAACAATGGCCAAATGCACCAACTTCCCATGGCCAACTTCTTGT
CACAACGGCTACGACCCACAGATGCCTAAACGGATGCTGTTCTCTCCGCT
GCTTTCGTGTTTCTCGATAGGTTTTGTTGTAATTCGCGACTCTCTTATAT
CCATCTCATCATCAACGGCGCGTGGTAGCAGGGCTCATGGAGCTGCTAGA
GCAGCTTCGAGTCCCTCCGTCACTGTCGCTGACGCCCCCGTGATGCCTTC
GCTCATATCGGTGGATGTAATATCACCGCGAGAAGTCGCCCTAGACCTAG
CCCCTCTGGTTCCCTGTGCGCGATCGAGCTACACGGTCAAGTGGTTCCTG
AAGGATGACCCCATCATCTTCGATCAGGTTTGTGCAAGCAACTTAAGTGT
CATTTGGCAGATGCACTCAGCCACTGAAGAAACTAAATCAAAACCGCGGT
GATGATGCTGGCGACCACACACCCATATCACACGTCCGGGTGGTCGTAGG
AGAGGTGGACGATTCCAGCTTACTGCAATGTATCTTTGCTCGCGACAAAT
ATCTCCACGATAAATAGTTGGGTAGTTGAAACGCTGCGCGTCTTGAGTGC
GCAAGTAGGCAACGGCAGCATTGCAGTCCAGGGTGGAGTTGACCAACCTC
TCCCCGGCGAGCAGTTACGTGGCGCTGGTGAGAAGGACGGAATCGAGAGA
GGCGAGCGCCGCGCGAGTGGAATTCTCCACGCCCGAGGTGAGTGATACCA
TAAGCGAGAACGAAGCGCCCGAGGACGCCTCTCCTTGGTCTCGCGCCCGA
TCAAGGAATGGAGCTAGACCACGCCGCTGTACCATTCGCCCGACGAGCCT
CCAGCAAATAACGAGCCAAACTTTCCTGGGGGGGAGGGCATGAAACAGTT
CAACCGAGTCACTAAGTCAGGTTCCCCGCGTCAGGATTCTGGGGTGATGC
GACCACTTTCCTATGCCCTAATCTGATCCTTTCGCAATTAACGGTTGAGC
CTCGATCCGGGACCTCAGGCAGAGGGAAACGTCACGGGTGAGATGATGGA
ACTCTCAAGGCTCGAGATTCGGGTGGGTCGCTGCGTGGAGATCAACAAGC
ATCCCAACGCCGACTCTCTGTACGTAGAGAAGGTAGACTTCGGCGAGGGA
GAGCCAAGGTGTGTCCTTGTGGTTTGTCATAGCGGGAGTAAGGGCGTTTT
CTCTTGACCTAGCCTTGGCGACTCGATTGACGCACGAATGTAAAATCAAT
CGTTTTTTCGCGTGATGATCGGGACCAACTCATGAAATTACTGCACGCCC
CGTTTCGCGAGCGTCGTGGTGCACTGATGCAGCCTCATGAAGCTTTGGGA
GGCAAGGGGGATGTCTTTTTTAGCGATGCCACAGAATCGCCTGCGGCGGC
CGGCACTCAAGTGTACAGCGCCATCGTGTGTCATATCTCGGAGGGAATCA
GACATGACGGTCTTGCTTTGACTAAACCTCTTTCTGCAAGCAGAACGGTC
GTCTCGGGGCTAGTGGGCTACATTTCGGTAGAGGAGATGCGAGACAGGCT
AGTGGTGGGGCTGTGCAACCTCCCTCCCAGGACCATGCGCGGAGTGGAAT
CTTCGGGGATGTTGCTGTGCGCCAGCAACGAGGATCACACGAGGCGAGCC
TAAGCTCTCCTGGCGGAGTTTTCGAGACCTTCGAATTTACGAACTCTTGT
CTGTTCCGTGATTTACCAACAGAGAGCAGAGAATGCACACGCTCGAGGTA
GCCTTGACACTCGTTTTCTACCCCGCGCCCGCATTTACTATCACATATCG
CGACCGTCCCCGCTACGCTCAGGCGAAAAGCAACTCCTCCATTGAGTTTT
TTTTATCGCACCCTCTCCTCAGAGAACGGACGGTTTCACGTTCCTCGTTC
TCGTTATCCATCGCTTTACGCCTCTCTTCATTAGGGCCACAATCATCCCT
AGTCGTAACCACAACCGGCAAGCGAAAAAGAGCGAGAGAAACTCAGCTCC
CGACCGATCCATTAGCGCGCTTCGTCTACCCAATCAGGACAGCGTAGCAC
TTACGCCCACCTTTCTGTTCTCTTGCCATTATTTCGTTTTTCTGCGCGCC
GTGTGGCCGATAACAGGGTCGATCCCCTGTCACCTCCCAAAGAAGCGAAT
GTCGGAGAACTCATCACCTTCGCGGGGGTGATGTCCGCGCCTGCCCCTTC
CGGGAGCGCCGCAGCACGGGCATGGTCTGCCGCGATGGAGGGAATGATGA
CGACGGCACCCGACGGCGTTGCCAGCTGGGAAGACCTGGCGATGAGGGTG
GTGGCCGGTGGCGCGTGCACGGCTTCCATCGTGGGTCGCGTGCGATGACG
AGAGGCGCTGTTGTTGGCGATAATGCACGAAATCTCACAAATGACAAGAC
GCACCTCAGGATCAACCACACATAGTTTATTTTATTTTTATTTTCTTCCT
CTATTTTGTCTCGATTTGTATATGGTGCTATGGAGTTTGACGTTGCCGCC
TTGTGGGGCCAAGATGCCATTAACTAGGGCAGTATCCATTATGCTAGCAT
ATTTTTTAGCTTATTTGGACATAAAGAGCGCTCATTTTGAAAAGAACATA
GCTCAGGCATATTCTGGACAACCACAAGCATAAGGCGAACTACAAAAGGC
ATAAGGCGCAGCATAACAAGCATAAAGTGTGCTACATAAGGCATAAGGCA
C
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Coding sequence (CDS) from alignment at H-elongata_contig14429:2686..5836+

>mRNA_H-elongata_contig14429.3039.1 ID=mRNA_H-elongata_contig14429.3039.1|Name=mRNA_H-elongata_contig14429.3039.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1932bp|location=Sequence derived from alignment at H-elongata_contig14429:2686..5836+ (Himanthalia elongata Himel1 dioecious)
ATGTCAGCGTCTCGGATTCTACTGCTGGTGGCATTCTGTAGTCTAAAAAT
ATCGGCTGATGTCAGCGTCTCGGATTCTACTGCTGGTGGCATTCTGTAGT
CTAAAAATATCGGCTGGTTTTGTTGTAATTCGCGACTCTCTTATATCCAT
CTCATCATCAACGGCGCGTGGTAGCAGGGCTCATGGAGCTGCTAGAGCAG
CTTCGAGTCCCTCCGTCACTGTCGCTGACGCCCCCGTGATGCCTTCGCTC
ATATCGGTGGATGTAATATCACCGCGAGAAGTCGCCCTAGACCTAGCCCC
TCTGGTTCCCTGTGCGCGATCGAGCTACACGGTCAAGTGGTTCCTGAAGG
ATGACCCCATCATCTTCGATCAGGTTTTGTTGTAATTCGCGACTCTCTTA
TATCCATCTCATCATCAACGGCGCGTGGTAGCAGGGCTCATGGAGCTGCT
AGAGCAGCTTCGAGTCCCTCCGTCACTGTCGCTGACGCCCCCGTGATGCC
TTCGCTCATATCGGTGGATGTAATATCACCGCGAGAAGTCGCCCTAGACC
TAGCCCCTCTGGTTCCCTGTGCGCGATCGAGCTACACGGTCAAGTGGTTC
CTGAAGGATGACCCCATCATCTTCGATCAGGCAACGGCAGCATTGCAGTC
CAGGGTGGAGTTGACCAACCTCTCCCCGGCGAGCAGTTACGTGGCGCTGG
TGAGAAGGACGGAATCGAGAGAGGCGAGCGCCGCGCGAGTGGAATTCTCC
ACGCCCGAGGCAACGGCAGCATTGCAGTCCAGGGTGGAGTTGACCAACCT
CTCCCCGGCGAGCAGTTACGTGGCGCTGGTGAGAAGGACGGAATCGAGAG
AGGCGAGCGCCGCGCGAGTGGAATTCTCCACGCCCGAGGCAGAGGGAAAC
GTCACGGGTGAGATGATGGAACTCTCAAGGCTCGAGATTCGGGTGGGTCG
CTGCGTGGAGATCAACAAGCATCCCAACGCCGACTCTCTGTACGTAGAGA
AGGTAGACTTCGGCGAGGGAGAGCCAAGGCAGAGGGAAACGTCACGGGTG
AGATGATGGAACTCTCAAGGCTCGAGATTCGGGTGGGTCGCTGCGTGGAG
ATCAACAAGCATCCCAACGCCGACTCTCTGTACGTAGAGAAGGTAGACTT
CGGCGAGGGAGAGCCAAGAACGGTCGTCTCGGGGCTAGTGGGCTACATTT
CGGTAGAGGAGATGCGAGACAGGCTAGTGGTGGGGCTGTGCAACCTCCCT
CCCAGGACCATGCGCGGAGTGGAATCTTCGGGGATGTTGCTGTGCGCCAG
CAACGAGGATCACACGAGAACGGTCGTCTCGGGGCTAGTGGGCTACATTT
CGGTAGAGGAGATGCGAGACAGGCTAGTGGTGGGGCTGTGCAACCTCCCT
CCCAGGACCATGCGCGGAGTGGAATCTTCGGGGATGTTGCTGTGCGCCAG
CAACGAGGATCACACGAGGGTCGATCCCCTGTCACCTCCCAAAGAAGCGA
ATGTCGGAGAACTCATCACCTTCGCGGGGGTGATGTCCGCGCCTGCCCCT
TCCGGGAGCGCCGCAGCACGGGCATGGTCTGCCGCGATGGAGGGAATGAT
GACGACGGCACCCGACGGCGTTGCCAGCTGGGAAGACCTGGCGATGAGGG
TGGTGGCCGGTGGCGCGTGCACGGCTTCCATCGTGGGTCGCGTGCGATGA
GGTCGATCCCCTGTCACCTCCCAAAGAAGCGAATGTCGGAGAACTCATCA
CCTTCGCGGGGGTGATGTCCGCGCCTGCCCCTTCCGGGAGCGCCGCAGCA
CGGGCATGGTCTGCCGCGATGGAGGGAATGATGACGACGGCACCCGACGG
CGTTGCCAGCTGGGAAGACCTGGCGATGAGGGTGGTGGCCGGTGGCGCGT
GCACGGCTTCCATCGTGGGTCGCGTGCGATGA
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