mRNA_H-elongata_contig144247.3038.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144247.3038.1
Unique NamemRNA_H-elongata_contig144247.3038.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig144247.3038.1 vs. uniprot
Match: A0A6H5JCV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV2_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 4.610e-86
Identity = 199/356 (55.90%), Postives = 218/356 (61.24%), Query Frame = 1
Query:    1 QPLCTGIFASHTDWVTGLAVASGRIMASSSNDGTLKLWDLAAAGSDLGGAGRTDRWEDRD-GGRTGLGERIGEWGSRDEVIPVHI---------NGSSSRSKSAPGSMGVSNGDR-GSNSHEDGSAXXXXXXXXXXXXXXXXXXXRPPLRPDPLATVAGHGDYVKCLTYAPEGGVFVSGGLDKRILLWDLQRMAAPLMALRTGDGEVDVA------------------------SPVTDRLV-------RGKPWC---GEGAWFHVRDPAKVVLRPGVAAAGPNEVFELCRQNKGSVYCVDASMDATLVASGGTDRMIRLLDPRAGSGHAARVCKLDGHRDNVRCVKIDEGGNRVV 933
            QP CTG+FASHTDWVTGLAVA GRIMAS+S DGTLKLWDLAAA          DR  + D GGR                               G   + + A    G +NG R G +  +D +A  XXXXXXXXXXXXXXXXXRP    + LATVAGHGDYVKCLTYA + GV VSGGLDKRILLWDLQRM+APLM LR G G                             SP   R          G PW    GEG W H+RDP +V LR G AAAGPNEV ELCRQNKGSV+CV A+ DA+LVASGGTDRMIRLLDPRAG   AA++CKLDGH DNVRCVKIDEGG RVV
Sbjct:   99 QPPCTGVFASHTDWVTGLAVAEGRIMASASYDGTLKLWDLAAA----------DRARNADKGGREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLGGQGEEA---AGEANGLRTGMHGVQDTAARAXXXXXXXXXXXXXXXXXRP----NALATVAGHGDYVKCLTYAEQRGVLVSGGLDKRILLWDLQRMSAPLMVLRGGSGAXXXXXXXXXXXXXXXXXXXXXMMNSAGYSPAAGRQQVGGQRQGAGAPWLSDEGEGGWPHLRDPLRVALRAGQAAAGPNEVLELCRQNKGSVHCVAAAADASLVASGGTDRMIRLLDPRAGGAQAAKICKLDGHGDNVRCVKIDEGGTRVV 437          
BLAST of mRNA_H-elongata_contig144247.3038.1 vs. uniprot
Match: D8LJZ3_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ3_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 2.020e-72
Identity = 131/205 (63.90%), Postives = 140/205 (68.29%), Query Frame = 1
Query:  412 LRPDPLATVAGHGDYVKCLTYAPEGGVFVSGGLDKRILLWDLQRMAAPLMALRTGDGEVDVA---------------------SPVTDRLVR-------GKPWC---GEGAWFHVRDPAKVVLRPGVAAAGPNEVFELCRQNKGSVYCVDASMDATLVASGGTDRMIRLLDPRAGSGHAARVCKLDGHRDNVRCVKIDEGGNRVV 933
            LRP+ LATVAGHGDYVKCLTYA + GV VSGGLDKRILLWDLQRM+APLM LR G G                          SP              G PW    GEG W H+RDP +V LR G AAAGPNEV ELCRQNKGSV+CV A+ DA+LVASGGTDRMIRLLDPRAG G AA+VCKLDGH DNVRCVKIDEGG RVV
Sbjct:   88 LRPNALATVAGHGDYVKCLTYAEQRGVLVSGGLDKRILLWDLQRMSAPLMVLRGGSGXXXXXXXXXXXXXXXXXXXXXXXXGYSPXXXXXXXXXXXQGAGAPWLSDEGEGGWPHLRDPLRVALRAGQAAAGPNEVLELCRQNKGSVHCVAAAADASLVASGGTDRMIRLLDPRAGGGQAAKVCKLDGHGDNVRCVKIDEGGTRVV 292          
BLAST of mRNA_H-elongata_contig144247.3038.1 vs. uniprot
Match: A0A388M9C0_CHABU (Uncharacterized protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388M9C0_CHABU)

HSP 1 Score: 86.3 bits (212), Expect = 5.010e-15
Identity = 58/173 (33.53%), Postives = 84/173 (48.55%), Query Frame = 1
Query:  433 TVAGHGDYVKCLTYAPEGGVFVSGGLDKRILLWDLQRMAAPLMALRTGDGEVDVASPVTDRLVRGKPWCGEGAWFHVRDPAKVVL-------RPGVAAAGPNEVFEL---CRQNKGSVYCVDASMDATLVASGGTDRMIRLLDPRAGSGHAARVCKLDGHRDNVRCVKIDEGG 921
            T+  H DYVK L  A +  +  SGGL   + +WDL+    P+      DG    ASP+ D       + G G    +  PA   +       R G   AG + +       + +K SVY +  + D T++ASGGT++ IR+ DPR G    A+  KL GH DN+RC+ +D  G
Sbjct:  135 TLRQHSDYVKALAAARQTNLVASGGLRCEVFVWDLEGSTVPVARAPMNDG----ASPMHD----SGAYAGAGGMGVLGMPAGNSVHSSSAQDRSGCMGAGYSAITRTPVAFKGHKESVYALAMNDDGTVLASGGTEKAIRIWDPRTG----AKQMKLKGHSDNIRCLLLDPAG 295          
BLAST of mRNA_H-elongata_contig144247.3038.1 vs. uniprot
Match: A0A8H7SVP8_9FUNG (Uncharacterized protein n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7SVP8_9FUNG)

HSP 1 Score: 80.5 bits (197), Expect = 4.500e-13
Identity = 51/167 (30.54%), Postives = 78/167 (46.71%), Query Frame = 1
Query:  433 TVAGHGDYVKCLTYAPEGGVFVSGGLDKRILLWDLQRMAAPLMALRTGDGEVDVASPVTDRLVRGKPWCGEGAWFHVRDPAKVVLRPGVAAAGPNEVFELCRQNKGSVYCVDASMDATLVASGGTDRMIRLLDPRAGSGHAARVCKLDGHRDNVRCVKIDEGGNRVV 933
            T+  H D+ KCLTYA   G   SGGLD++I +WD+++  A L         +D                  G   H  D           + G N +  +   +K S+Y +  +   TL+ASG  ++++RL DPR+G     R+ KL GH DN+R + I + G  V+
Sbjct:  134 TIGYHTDFAKCLTYASSPGWVASGGLDRKINIWDIEKSEAAL--------SIDA-----------------GPSHHFTDET---------SEGNNSLNNI--SSKCSIYALAVNPTGTLLASGSPEKVVRLWDPRSGK----RISKLTGHTDNIRALLISDDGQYVI 260          
BLAST of mRNA_H-elongata_contig144247.3038.1 vs. uniprot
Match: A0A2G9H468_9LAMI (Uncharacterized protein n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9H468_9LAMI)

HSP 1 Score: 77.0 bits (188), Expect = 1.460e-12
Identity = 53/170 (31.18%), Postives = 81/170 (47.65%), Query Frame = 1
Query:  427 LATVAGHGDYVKCLTYAPEGGVFV-SGGLDKRILLWDLQRMAAPLMALRTGDGEVDVASPVTDRLVRGKPWCGEGAWFHVRDPAKVVLRPGVAAA-GPNEVFELCRQNKGSVYCVDASMDATLVASGGTDRMIRLLDPRAGSGHAARVCKLDGHRDNVRCVKIDEGGNRV 930
            + T   H DYV CL  A +   F+ SGGL   + +WDL+    PL   ++ D   D  S  T+ L    P     +   +     + + P  +   GP       + +K SVY +  +   TL+ SGGT++++R+ DPR GS    +  KL GH DN+R + +D  G  V
Sbjct:  119 IRTFRQHSDYVTCLAAADKNSNFLASGGLGGEVFIWDLEAALTPLS--KSNDANGDDCSTSTNGLGSSLP---NTSLRPISSSNNISVHPTQSQGYGPIAA----KGHKESVYALATNDRGTLLVSGGTEKVVRVWDPRTGS----KTMKLRGHTDNIRALLLDSTGRFV 275          
BLAST of mRNA_H-elongata_contig144247.3038.1 vs. uniprot
Match: A0A453K871_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453K871_AEGTS)

HSP 1 Score: 76.6 bits (187), Expect = 4.470e-12
Identity = 53/167 (31.74%), Postives = 78/167 (46.71%), Query Frame = 1
Query:  433 TVAGHGDYVKCLTYAPEGG-VFVSGGLDKRILLWDLQRMAAPLMALRTGDGEVDVASPVTDRLVRGKPWCGEGAWFHVRDPAKVVLRPGVAAAGPNEVFELCRQNKGSVYCVDASMDATLVASGGTDRMIRLLDPRAGSGHAARVCKLDGHRDNVRCVKIDEGGNRV 930
            T+  H DYV CL  A +   +  SGGL   + +WDL    AP+         VD      D +  G          +V     +V   G  + G + +    + +K SVY +D +   TL+ SGGT++++R+ DPR GS    +  KL GH DN+R + ID  G  V
Sbjct:  232 TLRQHSDYVICLAAAEKNSNIVASGGLGGEVFIWDLDAAIAPIAK------SVDAKE---DEVPNGNSGPALSTLCNVNSSGNIVSTNG-KSHGYSPIA--AKGHKDSVYALDMNDTGTLLVSGGTEKVVRVWDPRTGS----KNMKLRGHTDNIRALLIDSTGRFV 382          
BLAST of mRNA_H-elongata_contig144247.3038.1 vs. uniprot
Match: A0A1X2GQL8_9FUNG (WD40 repeat-like protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GQL8_9FUNG)

HSP 1 Score: 76.6 bits (187), Expect = 8.030e-12
Identity = 46/155 (29.68%), Postives = 76/155 (49.03%), Query Frame = 1
Query:  433 TVAGHGDYVKCLTYAPEGGVFVSGGLDKRILLWDLQRMAAPLMALRTGDGEVDVASPVTDRLVRGKPWCGEGAWFHVRDPAKVVLRPGVAAAGPNEVFELCRQNKGSVYCVDASMDATLVASGGTDRMIRLLDPRAGSGHAARVCKLDGHRDNVR 897
            T+  H DYVKCL YA + G   SGGLDKRI +WDL++  A +++L+ G   ++  +   D +                           A+ GP         +K S+Y +  +   +L+ +G  ++++R+ DP++G     R+ KL GH DN+R
Sbjct:   42 TIGWHADYVKCLAYASQAGWVASGGLDKRICIWDLEKREA-VLSLQVGSMNMNNDASAGDAVG--------------------------ASHGP--------PSKSSIYAMAVNPTGSLLVTGSPEKVVRVWDPKSGK----RISKLTGHTDNIR 157          
BLAST of mRNA_H-elongata_contig144247.3038.1 vs. uniprot
Match: A0A367KKW5_RHIST (Uncharacterized protein (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KKW5_RHIST)

HSP 1 Score: 75.1 bits (183), Expect = 2.750e-11
Identity = 51/155 (32.90%), Postives = 73/155 (47.10%), Query Frame = 1
Query:  433 TVAGHGDYVKCLTYAPEGGVFVSGGLDKRILLWDLQRMAAPLMALRTGDGEVDVASPVTDRLVRGKPWCGEGAWFHVRDPAKVVLRPGVAAAGPNEVFELCRQNKGSVYCVDASMDATLVASGGTDRMIRLLDPRAGSGHAARVCKLDGHRDNVR 897
            T+  H DY KCLTYA + G   SGGLD+RI +WD+++  A L         +D A PV                 H  D           +   N +      +K S+Y +  +   TL+ASG  ++++RL DPR+G     R+ KL GH DN+R
Sbjct:   87 TIGHHMDYAKCLTYASQPGWVASGGLDRRINIWDIEKSEASLT--------ID-AGPV----------------HHYTDNT---------SENTNTMHN--NSSKCSIYALAVNPSGTLMASGSPEKVVRLWDPRSGK----RISKLTGHTDNIR 201          
BLAST of mRNA_H-elongata_contig144247.3038.1 vs. uniprot
Match: A0A2K3PLF4_TRIPR (WD repeat-containing protein 48-like n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3PLF4_TRIPR)

HSP 1 Score: 72.8 bits (177), Expect = 4.520e-11
Identity = 53/170 (31.18%), Postives = 79/170 (46.47%), Query Frame = 1
Query:  433 TVAGHGDYVKCLTYAPEGG-VFVSGGLDKRILLWDLQRMAAPLMALRTGDGEVDVASPVTDRLVRGKPWCGE---GAWFHVRDPAKVVLRPGVAAAGPNEVFELCRQNKGSVYCVDASMDATLVASGGTDRMIRLLDPRAGSGHAARVCKLDGHRDNVRCVKIDEGGNRV 930
            T+  H DYV CL  A +   +  SGGL   + +WD++  AA   A +  D   D AS   +      P       G+   +   A+      VAA G  E          SVY +  +   TL+ SGGT++++R+ DPR+GS    +  KL GH DN+R + +D  G  +
Sbjct:  133 TLCQHSDYVTCLAAAEKNSNIVASGGLGGEVFIWDIE--AALASASKCNDAMDDDASNGVNSSGNSLPMTSLRTIGSSNSISMQAQTEGYIPVAAKGHKE----------SVYALAMNEGGTLLVSGGTEKVVRVWDPRSGS----KTMKLKGHTDNIRALILDSTGRNL 286          
BLAST of mRNA_H-elongata_contig144247.3038.1 vs. uniprot
Match: UPI000F60783A (WD repeat-containing protein 48 homolog n=1 Tax=Coffea eugenioides TaxID=49369 RepID=UPI000F60783A)

HSP 1 Score: 72.4 bits (176), Expect = 5.710e-11
Identity = 55/181 (30.39%), Postives = 81/181 (44.75%), Query Frame = 1
Query:  427 LATVAGHGDYVKCLTYAPEGG-VFVSGGLDKRILLWDLQRMAAPLMALRTGDGEVDVASPVTDRLVRGKPWCGEGAWFHVRDPAKVVLRPGVAAAGPNEVFELCRQNKG-----------SVYCVDASMDATLVASGGTDRMIRLLDPRAGSGHAARVCKLDGHRDNVRCVKIDEGGNRVV 933
            + T+  H DYV CL  A +   +  SGGL   + +WDL+   AP    ++ D   D  S            CG G+         V LRP       N +     Q++G           SVY +  +   TL+ SGGT++++R+ DPR GS    +  KL GH DN+R + +D  G  V+
Sbjct:  123 VRTLRQHTDYVTCLAAAEKNSNIVASGGLGGEVFIWDLETALAPHS--KSSDATEDDCSNGV---------CGSGSSL------PVSLRP---INSSNSISLHTTQSQGYVPIAAKGHKESVYALAMNESGTLLVSGGTEKVVRVWDPRTGS----KTMKLRGHTDNIRTLLLDSTGRFVL 279          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144247.3038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCV2_9PHAE4.610e-8655.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJZ3_ECTSI2.020e-7263.90Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A388M9C0_CHABU5.010e-1533.53Uncharacterized protein n=2 Tax=Chara braunii TaxI... [more]
A0A8H7SVP8_9FUNG4.500e-1330.54Uncharacterized protein n=1 Tax=Thamnidium elegans... [more]
A0A2G9H468_9LAMI1.460e-1231.18Uncharacterized protein n=1 Tax=Handroanthus impet... [more]
A0A453K871_AEGTS4.470e-1231.74Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A1X2GQL8_9FUNG8.030e-1229.68WD40 repeat-like protein n=1 Tax=Hesseltinella ves... [more]
A0A367KKW5_RHIST2.750e-1132.90Uncharacterized protein (Fragment) n=1 Tax=Rhizopu... [more]
A0A2K3PLF4_TRIPR4.520e-1131.18WD repeat-containing protein 48-like n=1 Tax=Trifo... [more]
UPI000F60783A5.710e-1130.39WD repeat-containing protein 48 homolog n=1 Tax=Co... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144247contigH-elongata_contig144247:319..1251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.0
Seed ortholog evalue4.7e-62
Seed eggNOG ortholog2880.D8LJZ3
Preferred nameWDR48
KEGG koko:K15361
KEGG Pathwayko03460,map03460
GOsGO:0000003,GO:0000724,GO:0000725,GO:0001501,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0007276,GO:0007283,GO:0007338,GO:0007548,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008284,GO:0008406,GO:0008584,GO:0009566,GO:0009653,GO:0009790,GO:0009887,GO:0009893,GO:0009987,GO:0010468,GO:0010604,GO:0010628,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0019953,GO:0022414,GO:0030162,GO:0030428,GO:0031323,GO:0031325,GO:0031396,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032182,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032991,GO:0033554,GO:0034641,GO:0035264,GO:0035295,GO:0036211,GO:0036459,GO:0040007,GO:0040012,GO:0040017,GO:0042127,GO:0042592,GO:0042769,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043588,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0045862,GO:0046483,GO:0046546,GO:0046661,GO:0048232,GO:0048513,GO:0048518,GO:0048520,GO:0048522,GO:0048568,GO:0048589,GO:0048608,GO:0048609,GO:0048705,GO:0048731,GO:0048856,GO:0048872,GO:0050678,GO:0050679,GO:0050789,GO:0050794,GO:0050795,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051286,GO:0051606,GO:0051704,GO:0051716,GO:0060255,GO:0060341,GO:0061458,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0072520,GO:0080090,GO:0090085,GO:0090304,GO:0090325,GO:0090326,GO:0101005,GO:0140096,GO:1901360,GO:1901564,GO:1902525,GO:1903003,GO:1903320,GO:1903322,GO:1903827,GO:1903829,GO:2000008,GO:2000010
EggNOG free text desc.regulation of protein monoubiquitination
EggNOG OGsKOG0308@1,KOG0308@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size933
Cds size933
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929855.4023066-CDS-H-elongata_contig144247:318..12511622929855.4023066-CDS-H-elongata_contig144247:318..1251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144247 319..1251 -
1691679184.6200292-CDS-H-elongata_contig144247:318..12511691679184.6200292-CDS-H-elongata_contig144247:318..1251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144247 319..1251 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144247.3038.1prot_H-elongata_contig144247.3038.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144247 319..1251 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144247.3038.1

>prot_H-elongata_contig144247.3038.1 ID=prot_H-elongata_contig144247.3038.1|Name=mRNA_H-elongata_contig144247.3038.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=311bp
QPLCTGIFASHTDWVTGLAVASGRIMASSSNDGTLKLWDLAAAGSDLGGA
GRTDRWEDRDGGRTGLGERIGEWGSRDEVIPVHINGSSSRSKSAPGSMGV
SNGDRGSNSHEDGSAAAAACGAGFEAQSPAPPPPRPPLRPDPLATVAGHG
DYVKCLTYAPEGGVFVSGGLDKRILLWDLQRMAAPLMALRTGDGEVDVAS
PVTDRLVRGKPWCGEGAWFHVRDPAKVVLRPGVAAAGPNEVFELCRQNKG
SVYCVDASMDATLVASGGTDRMIRLLDPRAGSGHAARVCKLDGHRDNVRC
VKIDEGGNRVV
back to top

mRNA from alignment at H-elongata_contig144247:319..1251-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144247.3038.1 ID=mRNA_H-elongata_contig144247.3038.1|Name=mRNA_H-elongata_contig144247.3038.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=933bp|location=Sequence derived from alignment at H-elongata_contig144247:319..1251- (Himanthalia elongata Himel1 dioecious)
CAGCCGCTTTGCACGGGAATCTTTGCGTCACACACCGATTGGGTGACCGG CTTGGCCGTAGCTTCAGGGCGTATCATGGCGTCGTCCTCAAACGACGGTA CCCTTAAGCTCTGGGATCTCGCCGCGGCGGGCAGTGACTTAGGCGGGGCG GGGCGCACGGACAGGTGGGAGGATCGAGACGGAGGGCGCACAGGTCTCGG CGAAAGAATAGGCGAGTGGGGCAGCAGAGACGAGGTGATACCGGTACACA TCAACGGGTCCAGCAGTCGGAGCAAGAGCGCTCCCGGTAGCATGGGAGTG AGCAACGGCGACCGCGGGTCGAACTCGCACGAGGACGGAAGCGCTGCAGC GGCTGCTTGTGGCGCTGGTTTCGAGGCACAGAGCCCCGCCCCTCCACCTC CTCGTCCTCCTTTGCGCCCCGACCCGCTCGCGACGGTGGCAGGTCATGGT GATTACGTGAAGTGTCTGACCTACGCTCCAGAGGGAGGCGTTTTCGTGTC GGGTGGGTTAGACAAGAGAATTCTCCTCTGGGACCTCCAGCGGATGGCGG CGCCGCTGATGGCCCTGCGCACAGGAGACGGCGAGGTCGACGTGGCCTCT CCTGTGACAGACAGGCTGGTGAGGGGCAAGCCATGGTGTGGCGAGGGCGC ATGGTTCCACGTCAGGGATCCGGCGAAGGTGGTACTGAGGCCCGGGGTCG CGGCCGCCGGGCCGAACGAAGTGTTCGAGCTCTGCCGGCAGAACAAGGGG TCGGTGTACTGTGTGGATGCATCGATGGACGCGACGCTGGTGGCGAGCGG GGGCACCGATCGCATGATCCGTCTGCTAGATCCTCGGGCGGGATCGGGGC ACGCCGCGAGGGTCTGCAAGCTCGACGGACACCGAGATAACGTCCGCTGC GTCAAGATCGACGAGGGTGGCAACCGCGTGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig144247:319..1251-

>mRNA_H-elongata_contig144247.3038.1 ID=mRNA_H-elongata_contig144247.3038.1|Name=mRNA_H-elongata_contig144247.3038.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1866bp|location=Sequence derived from alignment at H-elongata_contig144247:319..1251- (Himanthalia elongata Himel1 dioecious)
CAGCCGCTTTGCACGGGAATCTTTGCGTCACACACCGATTGGGTGACCGG
CTTGGCCGTAGCTTCAGGGCGTATCATGGCGTCGTCCTCAAACGACGGTA
CCCTTAAGCTCTGGGATCTCGCCGCGGCGGGCAGTGACTTAGGCGGGGCG
GGGCGCACGGACAGGTGGGAGGATCGAGACGGAGGGCGCACAGGTCTCGG
CGAAAGAATAGGCGAGTGGGGCAGCAGAGACGAGGTGATACCGGTACACA
TCAACGGGTCCAGCAGTCGGAGCAAGAGCGCTCCCGGTAGCATGGGAGTG
AGCAACGGCGACCGCGGGTCGAACTCGCACGAGGACGGAAGCGCTGCAGC
GGCTGCTTGTGGCGCTGGTTTCGAGGCACAGAGCCCCGCCCCTCCACCTC
CTCGTCCTCCTTTGCGCCCCGACCCGCTCGCGACGGTGGCAGGTCATGGT
GATTACGTGAAGTGTCTGACCTACGCTCCAGAGGGAGGCGTTTTCGTGTC
GGGTGGGTTAGACAAGAGAATTCTCCTCTGGGACCTCCAGCGGATGGCGG
CGCCGCTGATGGCCCTGCGCACAGGAGACGGCGAGGTCGACGTGGCCTCT
CCTGTGACAGACAGGCTGGTGAGGGGCAAGCCATGGTGTGGCGAGGGCGC
ATGGTTCCACGTCAGGGATCCGGCGAAGGTGGTACTGAGGCCCGGGGTCG
CGGCCGCCGGGCCGAACGAAGTGTTCGAGCTCTGCCGGCAGAACAAGGGG
TCGGTGTACTGTGTGGATGCATCGATGGACGCGACGCTGGTGGCGAGCGG
GGGCACCGATCGCATGATCCGTCTGCTAGATCCTCGGGCGGGATCGGGGC
ACGCCGCGAGGGTCTGCAAGCTCGACGGACACCGAGATAACGTCCGCTGC
GTCAAGATCGACGAGGGTGGCAACCGCGTGGTGCAGCCGCTTTGCACGGG
AATCTTTGCGTCACACACCGATTGGGTGACCGGCTTGGCCGTAGCTTCAG
GGCGTATCATGGCGTCGTCCTCAAACGACGGTACCCTTAAGCTCTGGGAT
CTCGCCGCGGCGGGCAGTGACTTAGGCGGGGCGGGGCGCACGGACAGGTG
GGAGGATCGAGACGGAGGGCGCACAGGTCTCGGCGAAAGAATAGGCGAGT
GGGGCAGCAGAGACGAGGTGATACCGGTACACATCAACGGGTCCAGCAGT
CGGAGCAAGAGCGCTCCCGGTAGCATGGGAGTGAGCAACGGCGACCGCGG
GTCGAACTCGCACGAGGACGGAAGCGCTGCAGCGGCTGCTTGTGGCGCTG
GTTTCGAGGCACAGAGCCCCGCCCCTCCACCTCCTCGTCCTCCTTTGCGC
CCCGACCCGCTCGCGACGGTGGCAGGTCATGGTGATTACGTGAAGTGTCT
GACCTACGCTCCAGAGGGAGGCGTTTTCGTGTCGGGTGGGTTAGACAAGA
GAATTCTCCTCTGGGACCTCCAGCGGATGGCGGCGCCGCTGATGGCCCTG
CGCACAGGAGACGGCGAGGTCGACGTGGCCTCTCCTGTGACAGACAGGCT
GGTGAGGGGCAAGCCATGGTGTGGCGAGGGCGCATGGTTCCACGTCAGGG
ATCCGGCGAAGGTGGTACTGAGGCCCGGGGTCGCGGCCGCCGGGCCGAAC
GAAGTGTTCGAGCTCTGCCGGCAGAACAAGGGGTCGGTGTACTGTGTGGA
TGCATCGATGGACGCGACGCTGGTGGCGAGCGGGGGCACCGATCGCATGA
TCCGTCTGCTAGATCCTCGGGCGGGATCGGGGCACGCCGCGAGGGTCTGC
AAGCTCGACGGACACCGAGATAACGTCCGCTGCGTCAAGATCGACGAGGG
TGGCAACCGCGTGGTG
back to top