mRNA_H-elongata_contig14423.3036.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14423.3036.1
Unique NamemRNA_H-elongata_contig14423.3036.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig14423.3036.1 vs. uniprot
Match: A0A6H5KN26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN26_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 5.460e-59
Identity = 195/576 (33.85%), Postives = 274/576 (47.57%), Query Frame = 1 
Query:    1 RYHCVKCKMKDQVWCDVAEKVY-DRIDSHTTISCKSCLVGASKSDQSEGSGKKNRKRLKSTNLSQKASAFPEHESHE----------NAIVHEREYYSNNVNADSLSQHVHTKTWRSLFFSTQAQRRRFFP---TTLA----LTTA---------SATI--SVPW*IPEASVRLGQWSVPFLQRYTTADIAGSVSDPERPLTSRTILCFWSLCLWRGGRPGQKSGRCHLTGGFHMYLVAHHNSPGNG---ARFSPHTNVT--------SLMSTALSLFQAYVLI**RMSRTRCSITVHPTPLVVFHLEVYTSRRSSHVYQRRSRQGHRDRPITWKMG-GSTI----AEEKHIAYVKS*AQ*AFDIA*NDGLFKRTPSSAHGPRMIGPGVLPEAVLADSAPVMVPTIVQDDMTAAGEGGNDPSDSSLINAALNVAHGSGEKLR-------------------------PIWGSMEIYLFVKDAQKSLPTKVGDGALRLVRVTDITQIQVMLLLVKYILQTGANLYTRVAKTCPAYYARLESSDVYTHHEIGSNIRRTKE-SDLKLLW*MPKITPRLP 1515
            R+ C KC M  +++C + E  Y D       + CK+C     + D   GSG + +KR K  ++  K + FPE +  +          N  VHER YYS++V  D L  HV TK    L F      +   P   TTLA    LT A         S T+  ++P  + E + R   W+  F Q  T  ++       + P+    ++ F S     GGRPG KS R HLTG  H +LVAH  + G+     RF+ +  VT        S     L+L +A             +++  P  L+   +  +T+ + + V    S  G RD+ I   +  G  +     +++++  ++   + AFDIA  DG+FKR P  A G R I PG LP+AV   SAP  VPT+VQD M  AGE G++PSD  L   A  ++   G  L                          PIWG MEI+L   +A++SL     DGA+RL+RV D  Q++ ML+  K  +  GA LY RVAKTCPAYYAR ESSD +THHEI S + R K+ SD   LW   +  P+ P
Sbjct:  629 RWSCHKCNMHHRMFCPLVENAYSDEGVKLPKMQCKTCP----EKDGKGGSGXEKKKRRKMHDVFDKVAVFPEEDQSDADMKSFLKDQNTHVHERVYYSHSVGVDDLLTHVGTKEPAKLLFLNPGADKTLLPDNATTLARIRDLTRALVASGSLHASGTVVCALPTPVYEHAHR---WAGAFKQAGTALEVE------DHPM----LVEFESR---GGGRPGHKSDRRHLTGRVHQFLVAHQATTGDSIPSVRFTCNQTVTADDVHGAESSSGPCLNLMKAVPF--------ENALSPFPPRLLTMCINRFTNLQDTVV----STCGDRDKTIETALSLGRKVEVFPVDDRNVDEMRERVKDAFDIAWADGVFKREPDPAGGLRTISPGNLPDAVPRSSAPASVPTVVQDMMAEAGETGDEPSDKVLTLVASKLSSTLGYALVQDGYDSSYALYTIPKMKYAMNGLEIPIWGDMEIHLSPAEARESLRADPVDGAVRLIRVADSAQLKQMLVPGKEFVAPGATLYMRVAKTCPAYYARWESSDPFTHHEILSEVPRDKKKSDTHALWFDAEDNPKTP 1172
[Close]
BLAST of mRNA_H-elongata_contig14423.3036.1 vs. uniprot
Match: D8LJG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG8_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 9.860e-58
Identity = 189/549 (34.43%), Postives = 271/549 (49.36%), Query Frame = 1 
Query:    1 RYHCVKCKMKDQVWCDVAEKVY-DRIDSHTTISCKSCLVGASKSDQSEGSGKKNRKRLKSTNLSQKASAFPEHESHENAIVHE--REYYSNNVNADSLSQHVHTKTWRSLFFSTQAQRRRFFP---TTLA----LTTA---------SATI--SVPW*IPEASVRLGQWSVPFLQRYTTADIAGSVSDPERPLTSRTILCFWSLCLWRGGRPGQKSGRCHLTGGFHMYLVAHHNSPGNG---ARFSPHTNVT--------SLMSTALSLFQAYVLI**RMSRTRCSITVHPTPLVVFHLEVYTSRRSSHVYQRRSRQGHRDRPITWKMG-GSTI----AEEKHIAYVKS*AQ*AFDIA*NDGLFKRTPSSAHGPRMIGPGVLPEAVLADSAPVMVPTIVQDDMTAAGEGGNDPSDSSLINAAL------NVAHGSGEKLRPIWGSMEIYLFVKDAQKSLPTKVGDGALRLVRVTDITQIQVMLLLVKYILQTGANLYTRVAKTCPAYYARLESSDVYTHHEIGSNIRRTKE-SDLKLLW*MPKITPRLP 1515
            R+ C KC M  +++C + E  Y D       + CK+C     + D   GSG + +KR K  ++  K +AFPE E   +A +    + YYS++V  D L  HV TK    L F      +   P   TTLA    LT A         S T+   +P  + E + R   W+  F Q  T  ++       + P+    ++ F S     GGRPG KS R HLTG  H +LVAH  + G+     RF+ +  VT        S     L+L +A             +++  P  L+   +  +T+ + + V    S  G RD+ I   +  G  +     +++++  ++   + AFDIA  DG+FKR P  A G R I PG LP+AV   SAP  VPT+VQD M  AGE G++PSD    +++        + +       PIWG MEI+L   +A++SL     DGA+RL+RV D  Q++ ML+  K  +  GA LY RVAKTCPAYYAR ESSD +THHEI S + R K+ SD   LW   +  P+ P
Sbjct:  254 RWSCHKCNMHHRMFCPLVENAYSDEGVRLPKMQCKTCP----EKDGKGGSGGEKKKRRKMHDVFDKVAAFPE-EDQSDADMKSFLKVYYSHSVGVDDLLTHVGTKEPAKLLFLNPGADKTLLPDNATTLARIRDLTRALVASGSLHASGTVVCDLPTPVYEHAHR---WAGAFKQAGTALEVE------DHPM----LVEFESR---GGGRPGHKSDRRHLTGRVHQFLVAHQATTGDSIPSVRFTCNQTVTADDVHGAESSSGPCLNLMKAVPF--------ENALSPFPPRLLTMCINRFTNLQDTVV----STCGDRDKTIETALSLGRKVEVFPVDDRNVDEMRERVKDAFDIAWADGVFKREPDPAGGLRTISPGNLPDAVPRSSAPASVPTVVQDMMAEAGETGDEPSDKDGYDSSYALYTIPKMKYAMNGPEIPIWGDMEIHLSPAEARESLRADRVDGAVRLIRVADSAQLKQMLVPGKEFVAPGATLYMRVAKTCPAYYARWESSDPFTHHEILSEVPRDKKKSDTHALWFDAEDNPKTP 769
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14423.3036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KN26_9PHAE5.460e-5933.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJG8_ECTSI9.860e-5834.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14423contigH-elongata_contig14423:660..3637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_003770.1
Exons6
Model size1634
Cds size687
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14423.3036.1prot_H-elongata_contig14423.3036.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14423 1203..2803 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929855.1759815-UTR-H-elongata_contig14423:659..8821622929855.1759815-UTR-H-elongata_contig14423:659..882Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14423 660..882 +
1691679184.5101328-UTR-H-elongata_contig14423:659..8821691679184.5101328-UTR-H-elongata_contig14423:659..882Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14423 660..882 +
1622929855.1965027-UTR-H-elongata_contig14423:1117..12021622929855.1965027-UTR-H-elongata_contig14423:1117..1202Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14423 1118..1202 +
1691679184.524545-UTR-H-elongata_contig14423:1117..12021691679184.524545-UTR-H-elongata_contig14423:1117..1202Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14423 1118..1202 +
1622929855.2783587-UTR-H-elongata_contig14423:2803..29631622929855.2783587-UTR-H-elongata_contig14423:2803..2963Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14423 2804..2963 +
1691679184.5802639-UTR-H-elongata_contig14423:2803..29631691679184.5802639-UTR-H-elongata_contig14423:2803..2963Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14423 2804..2963 +
1622929855.2931669-UTR-H-elongata_contig14423:3158..36371622929855.2931669-UTR-H-elongata_contig14423:3158..3637Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14423 3159..3637 +
1691679184.599176-UTR-H-elongata_contig14423:3158..36371691679184.599176-UTR-H-elongata_contig14423:3158..3637Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14423 3159..3637 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929855.2132452-CDS-H-elongata_contig14423:1202..13951622929855.2132452-CDS-H-elongata_contig14423:1202..1395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14423 1203..1395 +
1691679184.541406-CDS-H-elongata_contig14423:1202..13951691679184.541406-CDS-H-elongata_contig14423:1202..1395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14423 1203..1395 +
1622929855.2279387-CDS-H-elongata_contig14423:1704..20071622929855.2279387-CDS-H-elongata_contig14423:1704..2007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14423 1705..2007 +
1691679184.5511298-CDS-H-elongata_contig14423:1704..20071691679184.5511298-CDS-H-elongata_contig14423:1704..2007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14423 1705..2007 +
1622929855.2437313-CDS-H-elongata_contig14423:2257..24371622929855.2437313-CDS-H-elongata_contig14423:2257..2437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14423 2258..2437 +
1691679184.5603197-CDS-H-elongata_contig14423:2257..24371691679184.5603197-CDS-H-elongata_contig14423:2257..2437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14423 2258..2437 +
1622929855.2606013-CDS-H-elongata_contig14423:2792..28031622929855.2606013-CDS-H-elongata_contig14423:2792..2803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14423 2793..2803 +
1691679184.5691092-CDS-H-elongata_contig14423:2792..28031691679184.5691092-CDS-H-elongata_contig14423:2792..2803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14423 2793..2803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14423.3036.1

>prot_H-elongata_contig14423.3036.1 ID=prot_H-elongata_contig14423.3036.1|Name=mRNA_H-elongata_contig14423.3036.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=229bp
MAKFIFLNPGTEKTLFPNNSSVNNRIRDYFCAMVNSGSLRAAGTVVCAIS
PTIYNRGHRWVGERSGTALDIEDHPMFLEFMSLEGWAAWTKIRSLSSYGR
VSHVPRCTPQLPRQRSSLLPPHKRDKPNVNGVESFPGLCINLMKNVPYEM
LYHCSPHASCRFPSRGLHIQEKQSCLPAEIETRSSRPPYHLEDGWKYYCG
RKTHCIRQILSAVSVRHSVERWFVQAHA*
back to top

mRNA from alignment at H-elongata_contig14423:660..3637+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14423.3036.1 ID=mRNA_H-elongata_contig14423.3036.1|Name=mRNA_H-elongata_contig14423.3036.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2978bp|location=Sequence derived from alignment at H-elongata_contig14423:660..3637+ (Himanthalia elongata Himel1 dioecious)
AGGTACCACTGCGTCAAGTGCAAAATGAAAGACCAAGTGTGGTGCGATGT
GGCGGAGAAGGTGTATGACAGGATAGACTCGCACACGACGATATCATGCA
AGTCCTGCCTCGTCGGCGCTTCGAAGAGCGATCAGAGCGAAGGTAGTGGG
AAAAAGAATAGGAAGAGGCTGAAGTCGACAAACTTGTCTCAGAAGGCCTC
CGCATTCCCCGAGCATGAAAGCCGTCTGCATGTGAGATTCGAGTACTGCT
TCTGCGGCTGCGGATATATTGTTTGTTTCATCATCGCTTGTAGTGTTAAT
TTTATATATATTTAGGTAACATCCGCCATCTTTGCCTACATTACGAACTG
TATGACCGTATTTATATCAATCAAACACTGGCGTGCGCAAGGACCCTTTC
TTCTTGCTTGGAACGCATTCCCGTTTCGTCTTGTGTTTTTTCATCTGATA
TGTTAGAGACGAAAATGCCATAGTCCATGAGAGGGAGTACTACAGCAACA
ACGTCAATGCCGACAGCTTGTCGCAGCATGTCCATACAAAGACATGGCGA
AGTTTATTTTTCTCAACCCAGGCACAGAGAAGACGCTTTTTCCCAACAAC
TCTAGCGTTAACAACCGCATCCGCGACTATTTCTGTGCCATGGTGAATTC
CGGAAGCCTCCGTGCGGCTGGGACAGTGGTCTGTGCCATTTCTCCAACGA
TATACAACCGCGGACATCGCTGGGTCGGTGAGCGATGTTTCTGGTACTTG
ATAAACATTCTTAACTTGCCGTTTATATATACCATATGCTGCACTTGCAT
CTCTCTTGTTTTAGCACAGGAGCTTACCACAAAAACGCTCTTTTTAAGGT
TACGATGGGTTTGTGGTATCTCAACGTCTGCTAAAATGACACATAAAACT
CAGTTCACGGATGTTTGACCTAGGGCAGTCGCTACGTACATAATCCCCTA
TTGTTAGAACAGCACACTTTCAGAAATAAGATCTCTACACCTGCCTTCTC
CTGTGATGGTTGTGGCCGACGGCAATTTATATACGTTCAAGCAAGCCGGA
ACGGCCCTTGACATCGAGGACCATCCTATGTTTTTGGAGTTTATGTCTCT
GGAGGGGTGGGCGGCCTGGACAAAAATCAGGTCGTTGTCATCTTACGGGA
GGGTTTCACATGTACCTCGTTGCACACCACAACTCCCCCGGCAACGGAGC
TCGCTTCTCCCCCCACACAAACGTGACAAGCCTAATGTCAACGGCGTTGA
GTCTTTTCCAGGCCTATGTATTAATCTGATGAAGAATGTCCCGTACGAGA
TGCTCTATCACTGTTCACCCCACGCCTCTTGTCGTTTTCCATCTCGAGGT
AGGTGTCGACAAGAAATCATGTGTACGGTGTATATGCTTGAGTATTTGTA
TTTACATTCGAGATCCTTTTATGTCTGAGACTTGTTGGCTTATGCTATGC
CCAGGAGACAGGAGCAATAGAGAGAGCCTCCATCTATCTCCTTTCACTGG
TTTATTAGGTATTGTACGTCAATTTGTCTCTTCCTGTCGATGCGCCTAGC
TGGGTGATTACATGGCTAAAATTACAGTTGGTCCATCGTCCAACACAGGT
TTACACATCCAGGAGAAGCAGTCATGTCTACCAGCGGAGATCGAGACAAG
GTCATCGAGACCGCCCTATCACTTGGAAGATGGGTGGAAGTACTATTGCG
GAAGAAAAACACATTGCATACGTCAAATCCTGAGCGCAGTAAGCGTTCGA
CATAGCGTAGAACGATGGTTTGTTCAAGGTGAGGTAGATAATGAACTTAT
TTTTCATGGTCTTAGTGTCAACACTATGTTTATGGTGTCGTCGACCCTCA
CTTGGAGGTTCAGGTTTTGCACATTGTGTGGGCACGTTCAGATTCCATCT
TGACTCACGCGACGTAAGATCATATTAATTTCTCACGCACAAGCTCAATG
TCAACGACATGTAAACAAGTGTGGGTCTCCTCTCTTAACGATATCACCAA
AAAACAAGTCACATGAAACGGATTGATGCACATCATAACATTAGATCCAG
CAAGCATCAGCATGAACATGCTCTTCTATCACAGTATATGAAGAACAAAT
TAGCATTATCTTCTGGTCTTTTGATAAGTCCAGCGCACGCCTAGTTCCGC
ACATGGTCCGAGGATGATCGGTCCGGGAGTCCTACCGGAAGCTGTCCTGG
CCGATTCTGCTCCAGTTATGGTTCCTACCATCGTGCAAGACGATATGACC
GCGGCGGGCGAGGGTGGCAACGATCCGTCGGACAGCTCTTTGATTAATGC
TGCTGTACGGTTTCTACTACTCTAGGCTACGAGGTGAAGAAGGTAAGCCG
CTAGCTTTATGAGATCACTTCGCCGCGCTATTTATTTTGTCCCGACACTT
TGACACACAAAGCGAATGTAGTTAACAAGCCTGACCGATTCTCCTTCTTG
TTTCTACCGGCGTCCCTTATTTATTTATGCAGTCGGATGAAGATGATAGC
TAAATGTTGCACATGGTTCCGGGGAGAAGCTACGTCCCATCTGGGGCTCC
ATGGAGATTTACCTTTTCGTCAAGGACGCGCAGAAGTCACTCCCCACCAA
GGTGGGTGATGGCGCCTTGCGACTTGTGCGTGTCACGGACATCACGCAGA
TACAAGTAATGCTGCTTCTAGTAAAATATATTTTACAAACTGGGGCCAAC
CTCTACACGCGCGTCGCGAAAACATGCCCCGCCTACTATGCGCGTTTGGA
ATCCAGCGACGTCTATACGCACCACGAGATAGGATCAAATATTAGACGAA
CAAAGGAGTCGGATCTAAAGTTGCTGTGGTAGATGCCGAAAATAACCCCA
AGACTCCCATCAAGCTCAACATCTACAGGAATACAGAGAGTTCTTTAGAC
TGCAAGGCAGTACTCGTCAGGCCCGGATCCACTGCCGCCGTGCAGACCAG
TAACACCAACCACGACATCGAAGAGGAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig14423:660..3637+

>mRNA_H-elongata_contig14423.3036.1 ID=mRNA_H-elongata_contig14423.3036.1|Name=mRNA_H-elongata_contig14423.3036.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1374bp|location=Sequence derived from alignment at H-elongata_contig14423:660..3637+ (Himanthalia elongata Himel1 dioecious)
ATGGCGAAGTTTATTTTTCTCAACCCAGGCACAGAGAAGACGCTTTTTCC
CAACAACTCTAGCGTTAACAACCGCATCCGCGACTATTTCTGTGCCATGG
TGAATTCCGGAAGCCTCCGTGCGGCTGGGACAGTGGTCTGTGCCATTTCT
CCAACGATATACAACCGCGGACATCGCTGGGTCGGTGAGCGATATGGCGA
AGTTTATTTTTCTCAACCCAGGCACAGAGAAGACGCTTTTTCCCAACAAC
TCTAGCGTTAACAACCGCATCCGCGACTATTTCTGTGCCATGGTGAATTC
CGGAAGCCTCCGTGCGGCTGGGACAGTGGTCTGTGCCATTTCTCCAACGA
TATACAACCGCGGACATCGCTGGGTCGGTGAGCGATCCGGAACGGCCCTT
GACATCGAGGACCATCCTATGTTTTTGGAGTTTATGTCTCTGGAGGGGTG
GGCGGCCTGGACAAAAATCAGGTCGTTGTCATCTTACGGGAGGGTTTCAC
ATGTACCTCGTTGCACACCACAACTCCCCCGGCAACGGAGCTCGCTTCTC
CCCCCACACAAACGTGACAAGCCTAATGTCAACGGCGTTGAGTCTTTTCC
AGGCCTATGTATTAATCTGATGAAGAATGTCCCGTACGAGATGCTCTATC
ACTGTTCACCCCACGCCTCTTGTCGTTTTCCATCTCGAGCCGGAACGGCC
CTTGACATCGAGGACCATCCTATGTTTTTGGAGTTTATGTCTCTGGAGGG
GTGGGCGGCCTGGACAAAAATCAGGTCGTTGTCATCTTACGGGAGGGTTT
CACATGTACCTCGTTGCACACCACAACTCCCCCGGCAACGGAGCTCGCTT
CTCCCCCCACACAAACGTGACAAGCCTAATGTCAACGGCGTTGAGTCTTT
TCCAGGCCTATGTATTAATCTGATGAAGAATGTCCCGTACGAGATGCTCT
ATCACTGTTCACCCCACGCCTCTTGTCGTTTTCCATCTCGAGGTTTACAC
ATCCAGGAGAAGCAGTCATGTCTACCAGCGGAGATCGAGACAAGGTCATC
GAGACCGCCCTATCACTTGGAAGATGGGTGGAAGTACTATTGCGGAAGAA
AAACACATTGCATACGTCAAATCCTGAGCGCAGTAAGCGTTCGACATAGC
GTAGAACGATGGTTTGTTCAAGGTTTACACATCCAGGAGAAGCAGTCATG
TCTACCAGCGGAGATCGAGACAAGGTCATCGAGACCGCCCTATCACTTGG
AAGATGGGTGGAAGTACTATTGCGGAAGAAAAACACATTGCATACGTCAA
ATCCTGAGCGCAGTAAGCGTTCGACATAGCGTAGAACGATGGTTTGTTCA
AGCGCACGCCTAGCGCACGCCTAG
back to top