mRNA_H-elongata_contig144137.3033.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144137.3033.1
Unique NamemRNA_H-elongata_contig144137.3033.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig144137.3033.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 3.750e-11
Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = 1 
Query:    1 ECSACGGSGCGSFG-----PQCCTSDVEALGDLCSETGEAPCLIDDDGVETETSSGSTCSNGLDGVESSNGDYCCTDDCSACGG 237
            EC  CGG GC  +G       CC S++E  G+LCS T EAPC++DD            CSNG+ G+++  G+ CC  +C  CGG
Sbjct: 2709 ECGTCGGRGCAEYGGGLGEDNCCQSEIEDFGELCSVTMEAPCVVDD-----------VCSNGIPGIQT--GNACCLAECGTCGG 2779
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BLAST of mRNA_H-elongata_contig144137.3033.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 4.540e-10
Identity = 35/84 (41.67%), Postives = 45/84 (53.57%), Query Frame = 1 
Query:    1 ECSACGGSGCGSFG-----PQCCTSDVEALGDLCSETGEAPCLIDDDGVETETSSGSTCSNGLDGVESSNGDYCCTDDCSACGG 237
            EC  CGGSGC   G       CC S++E  G+LCS    APC++DD            CSNG+ G++S  G+ CC  +C  CGG
Sbjct: 1593 ECGGCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVDD-----------MCSNGIPGIQS--GNACCLAECGGCGG 1663
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BLAST of mRNA_H-elongata_contig144137.3033.1 vs. uniprot
Match: D7FY01_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY01_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 7.270e-9
Identity = 36/81 (44.44%), Postives = 43/81 (53.09%), Query Frame = 1 
Query:    4 CSACGGSGCGSFGP---QCCTSDVEALGDLCSETGEAPCLIDDDGVETETSSGSTCSNGLDGVESSNGDYCCTDDCSACGG 237
            C  CGG GC   G     CCTS++ A  + CSE G APC++D D          TCSNGL G E+S    CC+  C  CGG
Sbjct:  399 CGTCGGEGCSQLGEGAESCCTSNIIAAREPCSEKGAAPCIMDTD---------QTCSNGLAGFENSGA--CCSVGCGTCGG 468
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BLAST of mRNA_H-elongata_contig144137.3033.1 vs. uniprot
Match: D8LRN1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LRN1_ECTSI)

HSP 1 Score: 48.9 bits (115), Expect = 7.860e-5
Identity = 23/49 (46.94%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    4 CSACGGSGCGSFGPQ-------CCTSDVEALGDLCSETGEAPCLIDDDG 129
            C  C G GC +FG +       CC + ++A G LCSETG APC+ID++G
Sbjct:   44 CGRCAGEGCTAFGSENGLGADSCCGNAIKASGRLCSETGSAPCIIDEEG 92
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144137.3033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FJ68_ECTSI3.750e-1141.67WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JG29_9PHAE4.540e-1041.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FY01_ECTSI7.270e-944.44Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D8LRN1_ECTSI7.860e-546.94Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144137contigH-elongata_contig144137:16..495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue2.5e-07
Seed eggNOG ortholog2880.D7FY01
KEGG koko:K13023
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01002
Hectar predicted targeting categoryother localisation
Exons2
Model size241
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929854.8344114-CDS-H-elongata_contig144137:15..1421622929854.8344114-CDS-H-elongata_contig144137:15..142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144137 16..142 +
1691679184.3822763-CDS-H-elongata_contig144137:15..1421691679184.3822763-CDS-H-elongata_contig144137:15..142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144137 16..142 +
1622929854.8508701-CDS-H-elongata_contig144137:383..4931622929854.8508701-CDS-H-elongata_contig144137:383..493Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144137 384..493 +
1691679184.3934932-CDS-H-elongata_contig144137:383..4931691679184.3934932-CDS-H-elongata_contig144137:383..493Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144137 384..493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144137.3033.1prot_H-elongata_contig144137.3033.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144137 16..493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144137.3033.1

>prot_H-elongata_contig144137.3033.1 ID=prot_H-elongata_contig144137.3033.1|Name=mRNA_H-elongata_contig144137.3033.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
ECSACGGSGCGSFGPQCCTSDVEALGDLCSETGEAPCLIDDDGVETETSS
GSTCSNGLDGVESSNGDYCCTDDCSACGG
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mRNA from alignment at H-elongata_contig144137:16..495+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144137.3033.1 ID=mRNA_H-elongata_contig144137.3033.1|Name=mRNA_H-elongata_contig144137.3033.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=480bp|location=Sequence derived from alignment at H-elongata_contig144137:16..495+ (Himanthalia elongata Himel1 dioecious)
GAGTGCTCGGCCTGCGGTGGCTCTGGCTGTGGTAGCTTCGGTCCCCAGTG
CTGCACCAGTGACGTTGAGGCCCTGGGTGACCTTTGCAGCGAGACTGGGG
AGGCCCCTTGCTTGATCGACGACGATGGTGAGTTTTGGAGCGCCAACTCT
TGTAACGATACTGTACGAGTTTTTACTTTCTATGCGCCAGAAAATAGGAT
ACCCCACCTAACGAACAACGTCGCGAACATACTAGTATACAACACATACT
ATTTTGCCGGTTGATCGCTTTTTACTCTGTAAAAGGCACTATGTATTTCC
CGATGCATCCGCTATTAAAGCTGTTTTTTGAAAAAAAAATTAAGACATTC
ACTCGTTGTGTATCGCAGGGGTAGAGACAGAAACATCGTCGGGGTCTACC
TGCAGCAACGGTCTTGATGGCGTCGAGTCTAGCAACGGTGACTACTGCTG
CACGGACGACTGTTCAGCCTGTGGCGGTTC
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Coding sequence (CDS) from alignment at H-elongata_contig144137:16..495+

>mRNA_H-elongata_contig144137.3033.1 ID=mRNA_H-elongata_contig144137.3033.1|Name=mRNA_H-elongata_contig144137.3033.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig144137:16..495+ (Himanthalia elongata Himel1 dioecious)
GAGTGCTCGGCCTGCGGTGGCTCTGGCTGTGGTAGCTTCGGTCCCCAGTG
CTGCACCAGTGACGTTGAGGCCCTGGGTGACCTTTGCAGCGAGACTGGGG
AGGCCCCTTGCTTGATCGACGACGATGGAGTGCTCGGCCTGCGGTGGCTC
TGGCTGTGGTAGCTTCGGTCCCCAGTGCTGCACCAGTGACGTTGAGGCCC
TGGGTGACCTTTGCAGCGAGACTGGGGAGGCCCCTTGCTTGATCGACGAC
GATGGGGTAGAGACAGAAACATCGTCGGGGTCTACCTGCAGCAACGGTCT
TGATGGCGTCGAGTCTAGCAACGGTGACTACTGCTGCACGGACGACTGTT
CAGCCTGTGGCGGTGGGTAGAGACAGAAACATCGTCGGGGTCTACCTGCA
GCAACGGTCTTGATGGCGTCGAGTCTAGCAACGGTGACTACTGCTGCACG
GACGACTGTTCAGCCTGTGGCGGT
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