mRNA_H-elongata_contig144073.3029.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144073.3029.1
Unique NamemRNA_H-elongata_contig144073.3029.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig144073.3029.1 vs. uniprot
Match: A0A6H5KEC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEC8_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 1.080e-72
Identity = 106/154 (68.83%), Postives = 130/154 (84.42%), Query Frame = 1
Query:    1 MKKFPKTGLHNQAVKRKIIEMYSAPTAQFKAEMAAEIAGGRILYLNLDLWVDKFSSLKYMGGWFFYIDRNWELRSRLITVRQFNSTSKILESGRLSALLEKYLTIVFEEFNIDVNIIFSATSDAGSNVRRLCDTLLPRLWEWCVCHMLNCALVE 462
            +K FP TG+HN+AVK+ ++EMY+A  +QFK EMAA+I G R+L+LNLDLWVDKFSSLKY+G   FY+DR W LRSRLI VRQFN T ++LE  RLSALL+KYL  V EE+ +DV+++FSATSDAGS+V+RLCD LLP LWEWCVCHM+NCALVE
Sbjct:   43 LKNFPITGIHNKAVKQMVVEMYAATASQFKMEMAAQIGGMRLLHLNLDLWVDKFSSLKYIGIRLFYVDRTWVLRSRLIAVRQFNPTKELLEDNRLSALLQKYLESVLEEYGLDVSLLFSATSDAGSDVKRLCDVLLPGLWEWCVCHMINCALVE 196          
BLAST of mRNA_H-elongata_contig144073.3029.1 vs. uniprot
Match: A0A6H5KWS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS6_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 1.320e-68
Identity = 102/154 (66.23%), Postives = 130/154 (84.42%), Query Frame = 1
Query:    1 MKKFPKTGLHNQAVKRKIIEMYSAPTAQFKAEMAAEIAGGRILYLNLDLWVDKFSSLKYMGGWFFYIDRNWELRSRLITVRQFNSTSKILESGRLSALLEKYLTIVFEEFNIDVNIIFSATSDAGSNVRRLCDTLLPRLWEWCVCHMLNCALVE 462
            +K FP TG+HN+AVK+ ++EMY+A  +QFK EMAA+I G R+L+L+LDLWVDKFSSLKY+G   FY+DR W LRSRLI VRQFN T ++LE  RLSAL++K+L  V EE+ +DV+++FSATSD+GS+V+RLCD LLP LWEWCVCHM+NCALVE
Sbjct:  196 LKNFPITGIHNEAVKQMVVEMYAATASQFKMEMAAQIGGMRLLHLSLDLWVDKFSSLKYVGIPLFYVDRTWVLRSRLIAVRQFNPTKELLEDNRLSALVQKHLESVLEEYGLDVSLVFSATSDSGSDVKRLCDVLLPGLWEWCVCHMINCALVE 349          
BLAST of mRNA_H-elongata_contig144073.3029.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 2.790e-55
Identity = 95/154 (61.69%), Postives = 122/154 (79.22%), Query Frame = 1
Query:    4 KKFPKTGLHNQAVKRKIIEMYSAPTAQFKAEMAAEIAGGRILYLNLDLWVDKFSSLKYMGGWFFYIDRNWELRSRLITVRQFNSTSKILESGRLSALLEKYLTIVFEEFNIDVNIIFSATSDAGSNVR-RLCDTLLPRLWEWCVCHMLNCALVE 462
            K FP   LH +AV + ++E Y+A TAQF+AE+ AE+ G   L+L+LDLWVDK S+L +MG   FYIDR W L+SRL+ VRQFN T ++ E+ RLSA+LEKYLT V EEF +DV+++FSATSDAGS+V+ RLC TL+PRLW+ CVCHMLNC+LVE
Sbjct:   33 KGFPLGRLHKEAVAKMVVEYYAATTAQFQAEITAEVGGVPRLHLDLDLWVDKSSTLMFMGVRLFYIDREWRLKSRLLAVRQFNPTLEMFENERLSAVLEKYLTDVLEEFGLDVSMLFSATSDAGSDVKHRLCHTLIPRLWKSCVCHMLNCSLVE 186          
BLAST of mRNA_H-elongata_contig144073.3029.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 1.920e-53
Identity = 94/154 (61.04%), Postives = 112/154 (72.73%), Query Frame = 1
Query:    1 MKKFPKTGLHNQAVKRKIIEMYSAPTAQFKAEMAAEIAGGRILYLNLDLWVDKFSSLKYMGGWFFYIDRNWELRSRLITVRQFNSTSKILESGRLSALLEKYLTIVFEEFNIDVNIIFSATSDAGSNVRRLCDTLLPRLWEWCVCHMLNCALVE 462
            +K FP TG+HN+AVK+ I                    G R+L+ NLDLWVDKFSSLKY+G   FY DR W LRSRLI VRQFN T ++LE  RLSALL+KYL  V EE+ +DV+++FSATSDAGS+V+RLCD LLP LWEWCVCHM+NCALVE
Sbjct:  141 LKNFPITGIHNKAVKQMI-------------------GGMRLLHHNLDLWVDKFSSLKYIGIRLFYADRTWVLRSRLIAVRQFNPTKELLEDNRLSALLQKYLESVLEEYGLDVSLLFSATSDAGSDVKRLCDVLLPGLWEWCVCHMINCALVE 275          
BLAST of mRNA_H-elongata_contig144073.3029.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 2.680e-49
Identity = 87/151 (57.62%), Postives = 112/151 (74.17%), Query Frame = 1
Query:   10 FPKTGLHNQAVKRKIIEMYSAPTAQFKAEMAAEIAGGRILYLNLDLWVDKFSSLKYMGGWFFYIDRNWELRSRLITVRQFNSTSKILESGRLSALLEKYLTIVFEEFNIDVNIIFSATSDAGSNVRRLCDTLLPRLWEWCVCHMLNCALVE 462
            F  + +  Q VKR ++E Y+A  AQFK EMA E+AG   L+L+L+LWVDK SSLKYMG  FFY++  W+L+S L+ VRQFN T + L++ RLS LLEKY+  V EEF ID +++FSATSDAG +V+RLC  LLP L EWCVCHML+ +L E
Sbjct:  146 FAPSRIRKQEVKRMVVECYAATAAQFKEEMATEVAGVPCLHLSLELWVDKSSSLKYMGVRFFYVNSVWQLKSYLLAVRQFNPTPETLKNERLSELLEKYVFAVLEEFGIDASLLFSATSDAGGDVKRLCSVLLPGLREWCVCHMLSDSLAE 296          
BLAST of mRNA_H-elongata_contig144073.3029.1 vs. uniprot
Match: A0A6H5KHW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHW5_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 5.790e-44
Identity = 81/139 (58.27%), Postives = 104/139 (74.82%), Query Frame = 1
Query:    4 KKFPKTGLHNQAVKRKIIEMYSAPTAQFKAEMAAEIAGGRILYLNLDLWVDKFSSLKYMGGWFFYIDRNWELRSRLITVRQFNSTSKILESGRLSALLEKYLTIVFEEFNIDVNIIFSATSDAGSNVR-RLCDTLLPRL 417
            K FP   LH + V + ++E Y+A TAQFKAE+AAE+ G   L+L+L+LWVDK S+L +MG   FYIDR W LRSRL+ VRQFN T ++ E+ RLS LLEK+LT V E F +DV ++FSATSDAGS+V+ RLC  L+PRL
Sbjct:   46 KGFPLDRLHKETVAKMVVEYYAATTAQFKAEIAAEVGGVPRLHLDLELWVDKSSTLMFMGVRLFYIDREWRLRSRLLAVRQFNPTPEMFENERLSKLLEKHLTDVLE-FGLDVYMLFSATSDAGSDVKHRLCYILIPRL 183          
BLAST of mRNA_H-elongata_contig144073.3029.1 vs. uniprot
Match: A0A6H5JM59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM59_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 2.550e-43
Identity = 75/121 (61.98%), Postives = 97/121 (80.17%), Query Frame = 1
Query:   19 TGLHNQAVKRKIIEMYSAPTAQFKAEMAAEIAGGRILYLNLDLWVDKFSSLKYMGGWFFYIDRNWELRSRLITVRQFNSTSKILESGRLSALLEKYLTIVFEEFNIDVNIIFSATSDAGSN 381
            T L+N+AVK+ +++MY+A  +Q+K EMAA+I G R+L+LN DLWVDKFSSLK +G   FYIDR W LRSRLI VRQFN T ++LE  RL ALL+KYL  V EE+ +DV+++FSATSDAGS+
Sbjct:   30 TALNNKAVKQVVVDMYAATASQYKMEMAAQIGGMRLLHLNRDLWVDKFSSLKCIGIRLFYIDRTWVLRSRLIAVRQFNPTKELLEDNRLLALLQKYLESVLEEYGLDVSLLFSATSDAGSD 150          
BLAST of mRNA_H-elongata_contig144073.3029.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 2.150e-35
Identity = 60/90 (66.67%), Postives = 75/90 (83.33%), Query Frame = 1
Query:  193 FYIDRNWELRSRLITVRQFNSTSKILESGRLSALLEKYLTIVFEEFNIDVNIIFSATSDAGSNVRRLCDTLLPRLWEWCVCHMLNCALVE 462
            +Y+DR W LRSRLI VRQFN T ++LE  RLS LL+KYL  V  E+ +DV+++FSATSDAGS+V+RLCD LLP LWEWCVCHM+NCA+V+
Sbjct:    7 YYVDRTWVLRSRLIAVRQFNPTKELLEDNRLSTLLQKYLERVLAEYGLDVSLLFSATSDAGSDVKRLCDVLLPGLWEWCVCHMMNCAVVK 96          
BLAST of mRNA_H-elongata_contig144073.3029.1 vs. uniprot
Match: A0A2V3IPY4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPY4_9FLOR)

HSP 1 Score: 107 bits (268), Expect = 7.670e-25
Identity = 55/150 (36.67%), Postives = 83/150 (55.33%), Query Frame = 1
Query:   19 TGLHNQAVKRKIIEMYSAPTAQFKAEMAAEIAGGRI--LYLNLDLWVDKFSSLKYMGGWFFYIDRNWELRSRLITVRQFNSTSKILESGRLSALLEKYLTIVFEEFNIDVNIIFSATSDAGSNVRRLCDTLLPRLWEWCVCHMLNCALVE 462
            + LH   +KR +++MY A  + +K +         +   +LN+D W    S  K  G      D  W L+S+ +TVR F++ + +LESGRLS +L         +F ++ N + S+ SD+GS V+RL   LLP  W WC+ H+LNCALVE
Sbjct:  175 SSLHAGIIKRDVLDMYLATASLYKKQFLCVFQKTFLPEFHLNIDPWTLSLSRAKVFGVRIVVTDEQWCLQSKSLTVRHFDTCTTLLESGRLSGVLHLCYNKELMDFEVEPNNVMSSVSDSGSTVKRLGSKLLPGYWNWCMSHLLNCALVE 324          
BLAST of mRNA_H-elongata_contig144073.3029.1 vs. uniprot
Match: A0A6H5JJE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJE0_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 9.330e-21
Identity = 41/61 (67.21%), Postives = 52/61 (85.25%), Query Frame = 1
Query:    1 MKKFPKTGLHNQAVKRKIIEMYSAPTAQFKAEMAAEIAGGRILYLNLDLWVDKFSSLKYMG 183
            +K FP TG+HN+AVK+ + EMY+A  +QFK EMAA+I G R+L+LNLDLWVDKFSSLKY+G
Sbjct:   24 LKNFPITGIHNKAVKQMVFEMYAATASQFKMEMAAQIGGMRLLHLNLDLWVDKFSSLKYIG 84          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144073.3029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KEC8_9PHAE1.080e-7268.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWS6_9PHAE1.320e-6866.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBK4_ECTSI2.790e-5561.69Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE1.920e-5361.04Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LFP4_ECTSI2.680e-4957.62Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KHW5_9PHAE5.790e-4458.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM59_9PHAE2.550e-4361.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNY1_9PHAE2.150e-3566.67Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A2V3IPY4_9FLOR7.670e-2536.67Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A6H5JJE0_9PHAE9.330e-2167.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144073contigH-elongata_contig144073:659..1373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue1.5e-16
Seed eggNOG ortholog2880.D7G3L2
EggNOG OGs2CZK4@1,2SARG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size462
Cds size462
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929854.4741788-CDS-H-elongata_contig144073:658..9391622929854.4741788-CDS-H-elongata_contig144073:658..939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144073 659..939 -
1691679184.2429023-CDS-H-elongata_contig144073:658..9391691679184.2429023-CDS-H-elongata_contig144073:658..939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144073 659..939 -
1622929854.4915938-CDS-H-elongata_contig144073:1192..13731622929854.4915938-CDS-H-elongata_contig144073:1192..1373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144073 1193..1373 -
1691679184.2519662-CDS-H-elongata_contig144073:1192..13731691679184.2519662-CDS-H-elongata_contig144073:1192..1373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144073 1193..1373 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144073.3029.1prot_H-elongata_contig144073.3029.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144073 659..1373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144073.3029.1

>prot_H-elongata_contig144073.3029.1 ID=prot_H-elongata_contig144073.3029.1|Name=mRNA_H-elongata_contig144073.3029.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
MKKFPKTGLHNQAVKRKIIEMYSAPTAQFKAEMAAEIAGGRILYLNLDLW
VDKFSSLKYMGGWFFYIDRNWELRSRLITVRQFNSTSKILESGRLSALLE
KYLTIVFEEFNIDVNIIFSATSDAGSNVRRLCDTLLPRLWEWCVCHMLNC
ALVE
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mRNA from alignment at H-elongata_contig144073:659..1373-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144073.3029.1 ID=mRNA_H-elongata_contig144073.3029.1|Name=mRNA_H-elongata_contig144073.3029.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=715bp|location=Sequence derived from alignment at H-elongata_contig144073:659..1373- (Himanthalia elongata Himel1 dioecious)
ATGAAGAAGTTCCCCAAGACTGGCCTCCACAACCAAGCGGTGAAGCGCAA GATCATCGAGATGTATTCCGCGCCCACTGCTCAGTTCAAGGCGGAGATGG CCGCCGAGATTGCCGGCGGGCGGATTCTGTACCTTAACCTCGACCTCTGG GTGGACAAATTCTCGAGTTTGAAGTACATGGGTAAGTAACGGGTGACCGG TATTGCTTTCTCTAGATGATCGTAAATCTAAATCTATATCGCAGGGTAGC GTATTTTTCAATAGCTGAGGGGAAGATGTCCCCTTTGTGCCGTTGATTTG TTTGTGGGAAAATGTAAATGTAATGTACGTAAAGGAGATATTGAACGACT CACGGTCGTCTCCCATCAGCATAATTTATTTATCATACAATGCACGTGTG GCGGGTGTACCGCTCCCGATTCTTTTCAATCCAGGTGGTTGGTTTTTCTA CATCGACCGGAACTGGGAGTTGAGATCCCGCCTCATCACCGTTCGACAGT TCAACTCTACGTCGAAGATACTCGAGAGCGGCCGCCTCTCTGCGCTTCTC GAGAAGTACCTCACGATCGTGTTCGAGGAGTTCAATATCGACGTCAACAT AATTTTCTCAGCAACAAGCGACGCCGGCAGCAATGTGAGGCGACTCTGCG ACACACTGCTGCCGAGGCTATGGGAGTGGTGCGTGTGCCACATGCTCAAC TGTGCTCTGGTCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig144073:659..1373-

>mRNA_H-elongata_contig144073.3029.1 ID=mRNA_H-elongata_contig144073.3029.1|Name=mRNA_H-elongata_contig144073.3029.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig144073:659..1373- (Himanthalia elongata Himel1 dioecious)
ATGAAGAAGTTCCCCAAGACTGGCCTCCACAACCAAGCGGTGAAGCGCAA
GATCATCGAGATGTATTCCGCGCCCACTGCTCAGTTCAAGGCGGAGATGG
CCGCCGAGATTGCCGGCGGGCGGATTCTGTACCTTAACCTCGACCTCTGG
GTGGACAAATTCTCGAGTTTGAAGTACATGGATGAAGAAGTTCCCCAAGA
CTGGCCTCCACAACCAAGCGGTGAAGCGCAAGATCATCGAGATGTATTCC
GCGCCCACTGCTCAGTTCAAGGCGGAGATGGCCGCCGAGATTGCCGGCGG
GCGGATTCTGTACCTTAACCTCGACCTCTGGGTGGACAAATTCTCGAGTT
TGAAGTACATGGGTGGTTGGTTTTTCTACATCGACCGGAACTGGGAGTTG
AGATCCCGCCTCATCACCGTTCGACAGTTCAACTCTACGTCGAAGATACT
CGAGAGCGGCCGCCTCTCTGCGCTTCTCGAGAAGTACCTCACGATCGTGT
TCGAGGAGTTCAATATCGACGTCAACATAATTTTCTCAGCAACAAGCGAC
GCCGGCAGCAATGTGAGGCGACTCTGCGACACACTGCTGCCGAGGCTATG
GGAGTGGTGCGTGTGCCACATGCTCAACTGTGCTCTGGTCGAGGTGGTTG
GTTTTTCTACATCGACCGGAACTGGGAGTTGAGATCCCGCCTCATCACCG
TTCGACAGTTCAACTCTACGTCGAAGATACTCGAGAGCGGCCGCCTCTCT
GCGCTTCTCGAGAAGTACCTCACGATCGTGTTCGAGGAGTTCAATATCGA
CGTCAACATAATTTTCTCAGCAACAAGCGACGCCGGCAGCAATGTGAGGC
GACTCTGCGACACACTGCTGCCGAGGCTATGGGAGTGGTGCGTGTGCCAC
ATGCTCAACTGTGCTCTGGTCGAG
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