mRNA_H-elongata_contig144066.3027.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144066.3027.1
Unique NamemRNA_H-elongata_contig144066.3027.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig144066.3027.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 2.580e-23
Identity = 46/78 (58.97%), Postives = 64/78 (82.05%), Query Frame = 1
Query:    1 DEKDKKHYQSITGAVMYLARVSRYDILFAVSQLARAMSKLSKSHMGAAKHLLRHLAGTVNFSVTFKRRGFKLTAYSDA 234
            DEK+ + YQ I G++MY+A+V RYDI++A  QLAR+M+K SK HM AAKH LR+LAGT++FS+T+K+ GFKL  +SD+
Sbjct:  432 DEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDS 509          
BLAST of mRNA_H-elongata_contig144066.3027.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 2.620e-23
Identity = 49/76 (64.47%), Postives = 63/76 (82.89%), Query Frame = 1
Query:   13 KKHYQSITGAVMYLARVSRYDILFAVSQLARAMSKLSKSHMGAAKHLLRHLAGTVNFSVTFKRRGFKLTAYSDATG 240
            K+ YQ+I G+VMYLA+V+RYDI++  SQ ARAMS  SK HMGAAKHLLR+L+G+ +FS+T+KR GF LTA S+A G
Sbjct:  556 KQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANG 631          
BLAST of mRNA_H-elongata_contig144066.3027.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.820e-23
Identity = 46/78 (58.97%), Postives = 63/78 (80.77%), Query Frame = 1
Query:    1 DEKDKKHYQSITGAVMYLARVSRYDILFAVSQLARAMSKLSKSHMGAAKHLLRHLAGTVNFSVTFKRRGFKLTAYSDA 234
            DEK+ + YQ I G++MY+A+V RYDI++A  QLAR M+K SK HM AAKH LR+LAGT++FS+T+K+ GFKL  +SD+
Sbjct:  211 DEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDS 288          
BLAST of mRNA_H-elongata_contig144066.3027.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.920e-23
Identity = 46/78 (58.97%), Postives = 63/78 (80.77%), Query Frame = 1
Query:    1 DEKDKKHYQSITGAVMYLARVSRYDILFAVSQLARAMSKLSKSHMGAAKHLLRHLAGTVNFSVTFKRRGFKLTAYSDA 234
            DEK+ + YQ I G++MY+A+V RYDI++A  QLAR M+K SK HM AAKH LR+LAGT++FS+T+K+ GFKL  +SD+
Sbjct:  771 DEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDS 848          
BLAST of mRNA_H-elongata_contig144066.3027.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.970e-23
Identity = 46/78 (58.97%), Postives = 63/78 (80.77%), Query Frame = 1
Query:    1 DEKDKKHYQSITGAVMYLARVSRYDILFAVSQLARAMSKLSKSHMGAAKHLLRHLAGTVNFSVTFKRRGFKLTAYSDA 234
            DEK+ + YQ I G++MY+A+V RYDI++A  QLAR M+K SK HM AAKH LR+LAGT++FS+T+K+ GFKL  +SD+
Sbjct: 1440 DEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDS 1517          
BLAST of mRNA_H-elongata_contig144066.3027.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 9.770e-21
Identity = 45/69 (65.22%), Postives = 59/69 (85.51%), Query Frame = 1
Query:   28 SITGAVMYLARVSRYDILFAVSQLARAMSKLSKSHMGAAKHLLRHLAGTVNFSVTFKRRGFKLTAYSDA 234
            +I G+V+YLA+++RYDI++  SQLARAMS  SK HMGAAKHLLR+L+G+ +FS+T+KR GF LTA SDA
Sbjct:  474 AIIGSVIYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDA 542          
BLAST of mRNA_H-elongata_contig144066.3027.1 vs. uniprot
Match: A0A6H5KNV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV2_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 7.540e-20
Identity = 41/68 (60.29%), Postives = 56/68 (82.35%), Query Frame = 1
Query:   31 ITGAVMYLARVSRYDILFAVSQLARAMSKLSKSHMGAAKHLLRHLAGTVNFSVTFKRRGFKLTAYSDA 234
            I G++MY+A+V RYDI++A  QLAR M+K SK HM AAKH LR+LAGT++FS+T+K+ GFKL  +SD+
Sbjct:   98 IVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDS 165          
BLAST of mRNA_H-elongata_contig144066.3027.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 5.270e-15
Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 1
Query:   46 MYLARVSRYDILFAVSQLARAMSKLSKSHMGAAKHLLRHLAGTVNFSVTFKRRGFKLTAYSDA 234
            MY+A+V RYDI++A   LAR M+K SK H   AK  LR+LAGT++FS+T+K+ GFKL  +SD+
Sbjct:    1 MYIAQVLRYDIMYATGHLARPMAKPSKVHTVTAKQTLRYLAGTIDFSITYKKGGFKLATFSDS 63          
BLAST of mRNA_H-elongata_contig144066.3027.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 6.500e-15
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 DEKDKKHYQSITGAVMYLARVSRYDILFAVSQLARAMSKLSKSHMGAAKHLLRHLAGTVNFSVTFKRRGFKLTAYSDA 234
            DEK+ + YQ I G+ MY+A   +Y      + LAR M+K SK HM AAKH LR L GT++FS+T+K+ GFKL  +SD+
Sbjct: 1605 DEKETRKYQGIVGSPMYIAHXDQY------TWLARPMAKPSKVHMVAAKHTLRFLVGTIDFSITYKKGGFKLATFSDS 1676          
BLAST of mRNA_H-elongata_contig144066.3027.1 vs. uniprot
Match: W8BWJ0_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BWJ0_CERCA)

HSP 1 Score: 69.7 bits (169), Expect = 4.520e-12
Identity = 32/71 (45.07%), Postives = 51/71 (71.83%), Query Frame = 1
Query:   22 YQSITGAVMYLARVSRYDILFAVSQLARAMSKLSKSHMGAAKHLLRHLAGTVNFSVTFKRRGFKLTAYSDA 234
            YQS+ G++MYLA +SR DIL AVS+L++  +     H  AAKH+LR+L+GT+N S+ +++ G  +  ++DA
Sbjct: 1112 YQSLIGSLMYLAILSRPDILHAVSKLSQRNTNPHTEHENAAKHILRYLSGTINLSIVYRKTGEPVVGFADA 1182          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144066.3027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JME8_9PHAE2.580e-2358.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6R7_9PHAE2.620e-2364.47Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L5U2_9PHAE2.820e-2358.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE4.920e-2358.97Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE4.970e-2358.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBU1_9PHAE9.770e-2165.22CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KNV2_9PHAE7.540e-2060.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMK0_9PHAE5.270e-1555.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE6.500e-1550.00Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
W8BWJ0_CERCA4.520e-1245.07Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144066contigH-elongata_contig144066:332..574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score70.5
Seed ortholog evalue4.1e-10
Seed eggNOG ortholog1005962.W1QCY3
EggNOG free text desc.retrotransposon
EggNOG OGs38DPC@33154,3NUZ7@4751,3QNZW@4890,3RTT4@4891,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelSaccharomycetes
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929854.3710232-CDS-H-elongata_contig144066:331..5741622929854.3710232-CDS-H-elongata_contig144066:331..574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144066 332..574 +
1691679184.2153587-CDS-H-elongata_contig144066:331..5741691679184.2153587-CDS-H-elongata_contig144066:331..574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144066 332..574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144066.3027.1prot_H-elongata_contig144066.3027.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144066 332..574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144066.3027.1

>prot_H-elongata_contig144066.3027.1 ID=prot_H-elongata_contig144066.3027.1|Name=mRNA_H-elongata_contig144066.3027.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
DEKDKKHYQSITGAVMYLARVSRYDILFAVSQLARAMSKLSKSHMGAAKH
LLRHLAGTVNFSVTFKRRGFKLTAYSDATG*
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mRNA from alignment at H-elongata_contig144066:332..574+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144066.3027.1 ID=mRNA_H-elongata_contig144066.3027.1|Name=mRNA_H-elongata_contig144066.3027.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig144066:332..574+ (Himanthalia elongata Himel1 dioecious)
GACGAGAAGGACAAAAAGCATTACCAATCCATCACGGGTGCAGTCATGTA CCTTGCGCGGGTTTCTCGCTACGACATCCTTTTCGCCGTTAGCCAGCTAG CGAGGGCAATGTCTAAGCTTTCAAAATCCCACATGGGAGCGGCCAAGCAT TTACTTCGCCATTTGGCAGGGACTGTTAACTTCTCCGTTACTTTCAAGCG AAGAGGGTTCAAGCTTACAGCTTACTCTGACGCAACTGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig144066:332..574+

>mRNA_H-elongata_contig144066.3027.1 ID=mRNA_H-elongata_contig144066.3027.1|Name=mRNA_H-elongata_contig144066.3027.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig144066:332..574+ (Himanthalia elongata Himel1 dioecious)
GACGAGAAGGACAAAAAGCATTACCAATCCATCACGGGTGCAGTCATGTA
CCTTGCGCGGGTTTCTCGCTACGACATCCTTTTCGCCGTTAGCCAGCTAG
CGAGGGCAATGTCTAAGCTTTCAAAATCCCACATGGGAGCGGCCAAGCAT
TTACTTCGCCATTTGGCAGGGACTGTTAACTTCTCCGTTACTTTCAAGCG
AAGAGGGTTCAAGCTTACAGCTTACTCTGACGCAACTGGGTAAGACGAGA
AGGACAAAAAGCATTACCAATCCATCACGGGTGCAGTCATGTACCTTGCG
CGGGTTTCTCGCTACGACATCCTTTTCGCCGTTAGCCAGCTAGCGAGGGC
AATGTCTAAGCTTTCAAAATCCCACATGGGAGCGGCCAAGCATTTACTTC
GCCATTTGGCAGGGACTGTTAACTTCTCCGTTACTTTCAAGCGAAGAGGG
TTCAAGCTTACAGCTTACTCTGACGCAACTGGGTAA
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