mRNA_H-elongata_contig14402.3025.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14402.3025.1 vs. uniprot
Match: D7FSF4_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF4_ECTSI) HSP 1 Score: 417 bits (1073), Expect = 8.780e-140 Identity = 215/283 (75.97%), Postives = 251/283 (88.69%), Query Frame = 1
Query: 1 EVPAGLFSDLDLHRSTHAAISDVMGYTSMTKVQEQSIPVCITGVDVLAKAKTGTGKTLAFLIPAIERAAAATAGGGKANRFAGISAVVISPTRELAQQIAVEAQQVMSFHRLKLMCSVGGTNVNRDLNQLASGAPDILVATPGRLVDLLENHGVGRLTKTLDTLIFDEADQLLEMGFRPSIEKILRSLP-NKNDRQTLLFSATMPGDVQAMASLALRNEYKVVDCVGEDEDTHQHVSQKFAVVPSAELMPRLLATLLEAREDPDHKVIVFFVAARIVQVGSNL 846
E+ G F+DLDL ++THAAISDV+GY +MTKVQEQSIPVC+TGVDVLAKAKTGTGKT+AFLIPAIERAA G GK G+SA++ISPTRELAQQIAVEAQQ+MSFHRLKLMCSVGG NVNRDLNQL SGAPDI+VATPGRL+DL+ENHG+GR + LDTL+FDEADQLLEMGFRP+IE ILR+L +K RQTL+FSATMPGDVQA+AS+A++ Y+VVDCVGE+E+THQHV QKFAVVP AE +PRLLAT+L+A+EDPDHK+IVFFVAARIVQ+ + L
Sbjct: 103 EITTGQFNDLDLSKNTHAAISDVLGYANMTKVQEQSIPVCLTGVDVLAKAKTGTGKTVAFLIPAIERAA--KRGFGK-----GVSALIISPTRELAQQIAVEAQQIMSFHRLKLMCSVGGVNVNRDLNQLNSGAPDIMVATPGRLLDLMENHGLGRDMRDLDTLVFDEADQLLEMGFRPAIENILRNLQASKTYRQTLMFSATMPGDVQAIASIAMKPSYEVVDCVGEEENTHQHVPQKFAVVPMAEQIPRLLATILKAKEDPDHKIIVFFVAARIVQLHAEL 378
BLAST of mRNA_H-elongata_contig14402.3025.1 vs. uniprot
Match: A0A6H5JHU6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHU6_9PHAE) HSP 1 Score: 407 bits (1047), Expect = 1.090e-137 Identity = 213/279 (76.34%), Postives = 247/279 (88.53%), Query Frame = 1
Query: 1 EVPAGLFSDLDLHRSTHAAISDVMGYTSMTKVQEQSIPVCITGVDVLAKAKTGTGKTLAFLIPAIERAAAATAGGGKANRFAGISAVVISPTRELAQQIAVEAQQ--VMSFHRLKLMCSVGGTNVNRDLNQLASGAPDILVATPGRLVDLLENHGVGRLTKTLDTLIFDEADQLLEMGFRPSIEKILRSLP-NKNDRQTLLFSATMPGDVQAMASLALRNEYKVVDCVGEDEDTHQHVSQKFAVVPSAELMPRLLATLLEAREDPDHKVIVFFVAARIV 828
E+ G FSD++L ++THAAISDV+GY +MTKVQEQSIPVC+TGVDVLAKAKTGTGKT+AFLIPAIERAA G GK G+SA++ISPTRELAQQIAVEAQQ +MSFHRLKLMCSVGG NVNRDLNQL SGAPDI+VATPGRL+DLLENHG+GR + LDTLIFDEADQLLEMGFRP+IE ILR+L +K RQTL+FSATMPGDVQA+AS+A++ Y+VVDCVGE+E+THQHV QKFAVVP AE +PRLLAT+L+A+EDPDHK+IVFFVAARI+
Sbjct: 41 EITTGQFSDVNLSKNTHAAISDVLGYANMTKVQEQSIPVCLTGVDVLAKAKTGTGKTVAFLIPAIERAA--KRGFGK-----GVSALIISPTRELAQQIAVEAQQACIMSFHRLKLMCSVGGVNVNRDLNQLNSGAPDIMVATPGRLLDLLENHGLGRSMRDLDTLIFDEADQLLEMGFRPAIENILRNLQASKASRQTLMFSATMPGDVQAIASIAMKPSYEVVDCVGEEENTHQHVPQKFAVVPMAEQIPRLLATILKAKEDPDHKIIVFFVAARIL 312
BLAST of mRNA_H-elongata_contig14402.3025.1 vs. uniprot
Match: A0A6H5L2V2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2V2_9PHAE) HSP 1 Score: 279 bits (714), Expect = 5.360e-87 Identity = 154/280 (55.00%), Postives = 194/280 (69.29%), Query Frame = 1
Query: 19 FSDLDLHRSTHAAISDVMGYTSMTKVQEQSIPVCITGVDVLAKAKTGTGKTLAFLIPAIERAAAATAGGGKANRFAGISAVVISPTRELAQQIAVEAQQVMSFHRLKLMCSVGGTNVNRDLNQLASGAPDILVATPGRLVDLLENHGVGRLTKTLDTLIFDEADQLLEMGFRPSIEKILRSLPNKNDRQTLLFSATMPGDVQAMASLALRNEYKVVDCVGEDEDTHQHVSQKFAVVPSAELMPRLLATLLE--AREDPDHKVIVFFVAARIVQVGSNLAS 852
F+ L L T AI++V+GY ++TKVQ SIP + G DVLAKAKTGTGKTL+FL+PAIE A +A R GIS ++ISPTRELAQQIA EA QV++FH + L+C VGGTN+ D+ PDI+VATPGRL D L+N+G+ + L LIFDEADQLLEMGFRP+IE ILR +P+ DRQTLLFSATMPGDV+ +A LAL+ Y+ VDCVGE+E THQHV Q++ V + + L L E A + HK+IVFF AR+ Q + L +
Sbjct: 46 FAQLPLSAPTQRAIAEVLGYVTLTKVQNDSIPPALAGHDVLAKAKTGTGKTLSFLLPAIEGVARTP----RAQRK-GISVLIISPTRELAQQIADEANQVLTFHDMSLICVVGGTNIKADIRGFRD-RPDIVVATPGRLNDHLDNNGLAKDMAGLSHLIFDEADQLLEMGFRPAIEAILRYMPHSRDRQTLLFSATMPGDVRKIAQLALKERYEFVDCVGEEESTHQHVPQQYTVCGQDQQVEELCQLLRENMAADPRGHKIIVFFTTARLTQFYAELCN 319
BLAST of mRNA_H-elongata_contig14402.3025.1 vs. uniprot
Match: D8LUB6_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUB6_ECTSI) HSP 1 Score: 276 bits (705), Expect = 3.460e-85 Identity = 153/280 (54.64%), Postives = 192/280 (68.57%), Query Frame = 1
Query: 19 FSDLDLHRSTHAAISDVMGYTSMTKVQEQSIPVCITGVDVLAKAKTGTGKTLAFLIPAIERAAAATAGGGKANRFAGISAVVISPTRELAQQIAVEAQQVMSFHRLKLMCSVGGTNVNRDLNQLASGAPDILVATPGRLVDLLENHGVGRLTKTLDTLIFDEADQLLEMGFRPSIEKILRSLPNKNDRQTLLFSATMPGDVQAMASLALRNEYKVVDCVGEDEDTHQHVSQKFAVVPSAELMPRLLATLLE--AREDPDHKVIVFFVAARIVQVGSNLAS 852
F+ L L T AI++V+GY ++TKVQ SIP + G DVLAKAKTGTGKTL+FL PAIE A +A R GI ++ISPTRELAQQIA EA QV++FH + L+C VGGTN+ D+ PDI+VATPGRL D L+N+G+ + L LIFDEADQLLEMGFRP+IE ILR +P+ DRQTLLFSATMPGDV+ +A LAL+ Y+ VDCVGE+E THQHV Q++ V + + L L E A + HK+IVFF AR+ Q + L +
Sbjct: 146 FAQLPLSAPTQRAIAEVLGYATLTKVQNDSIPPALAGHDVLAKAKTGTGKTLSFLFPAIEGVARTP----RAQRK-GIWVLIISPTRELAQQIADEANQVLTFHDMSLICVVGGTNIKADIRGFRD-RPDIVVATPGRLNDHLDNNGLAKDMAGLSHLIFDEADQLLEMGFRPAIEAILRYMPHSRDRQTLLFSATMPGDVRKIAQLALKERYEFVDCVGEEESTHQHVPQQYTVCGQDQQVEELCQLLRENMAADPRGHKIIVFFTTARLTQFYAELCN 419
BLAST of mRNA_H-elongata_contig14402.3025.1 vs. uniprot
Match: A0A835ZDJ4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDJ4_9STRA) HSP 1 Score: 270 bits (689), Expect = 3.320e-84 Identity = 147/280 (52.50%), Postives = 185/280 (66.07%), Query Frame = 1
Query: 19 FSDLDLHRSTHAAISDVMGYTSMTKVQEQSIPVCITGVDVLAKAKTGTGKTLAFLIPAIERAAAATAGGGKANRFAGISAVVISPTRELAQQIAVEAQQVMSFHRLKLMCSVGGTNVNRDLNQLASGAPDILVATPGRLVDLLENHGVGRLTKTLDTLIFDEADQLLEMGFRPSIEKILRSLPNKNDRQTLLFSATMPGDVQAMASLALRNEYKVVDCVGEDEDTHQHVSQKFAVVPSAELMPRLLATLLEAREDPD--HKVIVFFVAARIVQVGSNLAS 852
F L ++ I+ MGY +MTKVQ +IPV +TGVD+LAKAKTGTGKTLAFLIP +ERA + R GIS ++ISPTRELAQQI EA F ++L C GGTN+ DL +L+ PDILVATPGRL D LEN + R L L+ DEADQLLEMGFRP+IE LR+LP + RQTLLFSATMP DV+A++ +A+R ++++VD VGE+E TH+HV Q V +P+LL L A D D HK+IVFF AR+ Q + L +
Sbjct: 6 FESLPINADLKRGITQAMGYETMTKVQSATIPVSLTGVDILAKAKTGTGKTLAFLIPCVERALRSP------RRAGGISVLIISPTRELAQQIHDEAALATRFMGMRLQCIFGGTNIKADLRKLSDATPDILVATPGRLNDHLENQTLARQLAGLSALVLDEADQLLEMGFRPAIEAALRNLPPPSARQTLLFSATMPQDVRAISRIAMRPDFELVDTVGEEESTHEHVPQSAVVTTMEHGVPQLLLLLRRAVHDADGAHKIIVFFTTARLTQFHAELCN 279
BLAST of mRNA_H-elongata_contig14402.3025.1 vs. uniprot
Match: A0A7S3XXC6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXC6_HETAK) HSP 1 Score: 265 bits (677), Expect = 9.430e-83 Identity = 149/272 (54.78%), Postives = 182/272 (66.91%), Query Frame = 1
Query: 19 FSDLDLHRSTHAAISDVMGYTSMTKVQEQSIPVCITGVDVLAKAKTGTGKTLAFLIPAIERAAAATAGGGKANRFAGISAVVISPTRELAQQIAVEAQQVMSFHRLKLMCSVGGTNVNRDLNQLASGAPDILVATPGRLVDLLENH-GVGRLTKTLDTLIFDEADQLLEMGFRPSIEKILRSLPNKNDRQTLLFSATMPGDVQAMASLALRNEYKVVDCVGEDEDTHQHVSQKFAVVPSAELMPRLLATLLEAREDPDHKVIVFFVAARIVQ 831
F+D L T A+++V+GY MT+VQ Q++PV + G DVLAKAKTGTGKTL FL+PAIER AA A A R +SA+VISPTRELAQQIA EA+Q++ FH L L GGT + +D++ PDILVATPGRL+D LEN G L LI DE DQLL+MGFRPSI KIL+ LP K+ RQTLLFSATMP DVQ MA L Y++VDCVG++ THQ V Q F V + + L + E R+ P HK+IVFF AR+ Q
Sbjct: 103 FADAPLAVGTQRALAEVLGYERMTRVQAQTLPVSLQGKDVLAKAKTGTGKTLGFLLPAIERILAAPA----AARRGRVSALVISPTRELAQQIAEEAKQLLKFHDLGLQVVFGGTKMTKDVSSFNRRTPDILVATPGRLLDHLENTPGFREACAGLQCLILDECDQLLDMGFRPSIVKILQHLPPKSGRQTLLFSATMPQDVQEMARFGLNPSYELVDCVGKEAGTHQQVPQTFLVCSVEDQLGELAQIIAEGRQVPGHKLIVFFTTARLTQ 370
BLAST of mRNA_H-elongata_contig14402.3025.1 vs. uniprot
Match: A0A7S4D8Q7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8Q7_HETAK) HSP 1 Score: 265 bits (677), Expect = 1.560e-81 Identity = 149/272 (54.78%), Postives = 182/272 (66.91%), Query Frame = 1
Query: 19 FSDLDLHRSTHAAISDVMGYTSMTKVQEQSIPVCITGVDVLAKAKTGTGKTLAFLIPAIERAAAATAGGGKANRFAGISAVVISPTRELAQQIAVEAQQVMSFHRLKLMCSVGGTNVNRDLNQLASGAPDILVATPGRLVDLLENH-GVGRLTKTLDTLIFDEADQLLEMGFRPSIEKILRSLPNKNDRQTLLFSATMPGDVQAMASLALRNEYKVVDCVGEDEDTHQHVSQKFAVVPSAELMPRLLATLLEAREDPDHKVIVFFVAARIVQ 831
F+D L T A+++V+GY MT+VQ Q++PV + G DVLAKAKTGTGKTL FL+PAIER AA A A R +SA+VISPTRELAQQIA EA+Q++ FH L L GGT + +D++ PDILVATPGRL+D LEN G L LI DE DQLL+MGFRPSI KIL+ LP K+ RQTLLFSATMP DVQ MA L Y++VDCVG++ THQ V Q F V + + L + E R+ P HK+IVFF AR+ Q
Sbjct: 23 FADAPLAVGTQRALAEVLGYERMTRVQAQTLPVSLQGKDVLAKAKTGTGKTLGFLLPAIERILAAPA----AARRGRVSALVISPTRELAQQIAEEAKQLLKFHDLGLQVVFGGTKMTKDVSSFNRRTPDILVATPGRLLDHLENTPGFREACAGLQCLILDECDQLLDMGFRPSIVKILQHLPPKSGRQTLLFSATMPQDVQEMARFGLNPSYELVDCVGKEAGTHQQVPQTFLVCSVEDQLGELAQIIAEGRQVPGHKLIVFFTTARLTQ 290
BLAST of mRNA_H-elongata_contig14402.3025.1 vs. uniprot
Match: A0A7S0YY46_9CRYP (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0YY46_9CRYP) HSP 1 Score: 262 bits (670), Expect = 5.010e-81 Identity = 148/285 (51.93%), Postives = 191/285 (67.02%), Query Frame = 1
Query: 1 EVPAGLFSDLDLHRSTHAAISDVMGYTSMTKVQEQSIPVCITGVDVLAKAKTGTGKTLAFLIPAIERAAAATAGGGKANRFAGISAVVISPTRELAQQIAVEAQQVMSFHR-LKLMCSVGGTNVNRDLNQLASGAPDILVATPGRLVDLLENHGVGRLTKTLDTLIFDEADQLLEMGFRPSIEKILRSLPNKNDRQTLLFSATMPGDVQAMASLALRN--EYKVVDCVGEDEDTHQHVSQKFAVVPSAELMPRLLATLLEAREDPDHKVIVFFVAARIVQVGSNL 846
++ F +L +H T +I++VM Y +MT VQ+QSIPV +TGVD+LAKAKTGTGKTL+FLIPA+E + GIS ++ISPTRELAQQI EA+ V+ HR + +MC VGGTN+NRD+ Q P +LVATPGRL D LEN G+ +L L LIFDEADQLL+MGFRP+I +L+ LP K+ RQTLLFSATMP DV+ +A LA+R+ + VD VG +E+THQHV Q + V L P L+ + E P +K+I FF AR Q+ S L
Sbjct: 37 QMTTSAFDELQVHPLTKKSIAEVMRYQTMTIVQQQSIPVALTGVDLLAKAKTGTGKTLSFLIPAVEHVI-------RDPPVRGISVLIISPTRELAQQIEEEAKMVVQMHRTITVMCIVGGTNMNRDI-QGFKRPPSLLVATPGRLNDHLENSGLAQLCSQLRCLIFDEADQLLDMGFRPAILTMLKFLPPKDTRQTLLFSATMPKDVKTIADLAMRSAQNFAYVDTVGAEENTHQHVEQTYVVASKQGLAPELVTLVREGMMTPGYKIIAFFPTARQTQLYSEL 313
BLAST of mRNA_H-elongata_contig14402.3025.1 vs. uniprot
Match: A0A5J4YBS8_9CHLO (DEAD box helicase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YBS8_9CHLO) HSP 1 Score: 262 bits (669), Expect = 4.400e-80 Identity = 140/281 (49.82%), Postives = 193/281 (68.68%), Query Frame = 1
Query: 19 FSDLDLHRSTHAAISDVMGYTSMTKVQEQSIPVCITGVDVLAKAKTGTGKTLAFLIPAIERAAAATAGGGKANRFAGISAVVISPTRELAQQIAVEAQQVMSFHRLKLMCSVGGTNVNRDLNQLASGAPDILVATPGRLVDLLENHGVGRLTKTLDTLIFDEADQLLEMGFRPSIEKILRSLPNKNDRQTLLFSATMPGDVQAMASLALRNEYKVVDCVGEDEDTHQ--HVSQKFAVVPSAELMPRLLATLLEAR-EDPDHKVIVFFVAARIVQVGSNLAS 852
F+DL + +T A+++V+ Y T VQ QS+P + GVD++ KAKTGTGKTLAFLIPA+ER A T+G IS +VISPTRELA QIAVEA+ + FH + + C VGGTN++ ++ ++ P ILVATPGRLVD L+N + L+TL+FDEAD+LL+MGFRP +EKILR+LPNK+ RQTLLFSAT P D+Q +A ALR ++++D VGED TH V Q +VP ++ +L+ L + R DP+HKV+VFF A++ Q+ + + +
Sbjct: 113 FADLPICSATKRALAEVLKYDLCTTVQAQSVPPSLQGVDMVCKAKTGTGKTLAFLIPALERMAGKTSGK--------ISTLVISPTRELASQIAVEAEALGRFHDITVQCVVGGTNIDSEIKKIKRSTPHILVATPGRLVDHLQNRDAAQFMTKLETLVFDEADRLLDMGFRPDVEKILRTLPNKSTRQTLLFSATFPQDIQELAKFALRPGFQLIDTVGEDS-THSSSQVQQSVMLVPMEQMAAQLIHILADHRASDPNHKVLVFFTTAKLTQLYAEMCN 384
BLAST of mRNA_H-elongata_contig14402.3025.1 vs. uniprot
Match: A0A7S3XX82_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX82_HETAK) HSP 1 Score: 264 bits (674), Expect = 6.170e-80 Identity = 146/278 (52.52%), Postives = 184/278 (66.19%), Query Frame = 1
Query: 19 FSDLDLHRSTHAAISDVMGYTSMTKVQEQSIPVCITGVDVLAKAKTGTGKTLAFLIPAIERAAAATAGGGKANRFAGISAVVISPTRELAQQIAVEAQQVMSFHRLKLMCSVGGTNVNRDLNQLASGAPDILVATPGRLVDLLENHGVG--RLTKTLDTLIFDEADQLLEMGFRPSIEKILRSLPNKNDRQTLLFSATMPGDVQAMASLALRNEYKVVDCVGEDEDTHQHVSQKFAVVPSAELMPRLLATLLEAREDPDHKVIVFFVAARIVQVGSNL 846
F+DL LH T A+ +V+GY+ MT VQ Q++PV + G DVLAKAKTGTGKTL FL+P IE+ AA A A R +SA+VISPTRELAQQIA EA+Q++ FH L L VGGT +++D L PDI+VATPGRL LL+ G L L+ DE DQLL+MGFRPSI +ILR LP K RQ+LLFSAT+P DVQ +A L L+ Y++VDCVGE+E TH+HV Q V + L + E R+ P HK+IVFF AR+ Q + +
Sbjct: 139 FTDLQLHAGTKRALKEVLGYSDMTHVQAQTLPVSLQGKDVLAKAKTGTGKTLGFLLPTIEQVLAAPA----AARRGRVSALVISPTRELAQQIAEEAKQLLKFHDLGLQTVVGGTKMSKDAAALRRRTPDIVVATPGRLEALLDEDTAGFRGACAGLRVLVMDECDQLLDMGFRPSILRILRGLPPKAGRQSLLFSATLPRDVQEIAGLGLKPSYELVDCVGEEESTHRHVPQSVLVCSMETQLAELAQIVEEGRQVPGHKIIVFFTTARLTQFYAEI 412 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14402.3025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14402.3025.1 >prot_H-elongata_contig14402.3025.1 ID=prot_H-elongata_contig14402.3025.1|Name=mRNA_H-elongata_contig14402.3025.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=288bp EVPAGLFSDLDLHRSTHAAISDVMGYTSMTKVQEQSIPVCITGVDVLAKAback to top mRNA from alignment at H-elongata_contig14402:374..3589- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14402.3025.1 ID=mRNA_H-elongata_contig14402.3025.1|Name=mRNA_H-elongata_contig14402.3025.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3216bp|location=Sequence derived from alignment at H-elongata_contig14402:374..3589- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14402:374..3589- >mRNA_H-elongata_contig14402.3025.1 ID=mRNA_H-elongata_contig14402.3025.1|Name=mRNA_H-elongata_contig14402.3025.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1728bp|location=Sequence derived from alignment at H-elongata_contig14402:374..3589- (Himanthalia elongata Himel1 dioecious)back to top |