mRNA_H-elongata_contig14402.3025.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14402.3025.1
Unique NamemRNA_H-elongata_contig14402.3025.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14402.3025.1 vs. uniprot
Match: D7FSF4_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF4_ECTSI)

HSP 1 Score: 417 bits (1073), Expect = 8.780e-140
Identity = 215/283 (75.97%), Postives = 251/283 (88.69%), Query Frame = 1
Query:    1 EVPAGLFSDLDLHRSTHAAISDVMGYTSMTKVQEQSIPVCITGVDVLAKAKTGTGKTLAFLIPAIERAAAATAGGGKANRFAGISAVVISPTRELAQQIAVEAQQVMSFHRLKLMCSVGGTNVNRDLNQLASGAPDILVATPGRLVDLLENHGVGRLTKTLDTLIFDEADQLLEMGFRPSIEKILRSLP-NKNDRQTLLFSATMPGDVQAMASLALRNEYKVVDCVGEDEDTHQHVSQKFAVVPSAELMPRLLATLLEAREDPDHKVIVFFVAARIVQVGSNL 846
            E+  G F+DLDL ++THAAISDV+GY +MTKVQEQSIPVC+TGVDVLAKAKTGTGKT+AFLIPAIERAA    G GK     G+SA++ISPTRELAQQIAVEAQQ+MSFHRLKLMCSVGG NVNRDLNQL SGAPDI+VATPGRL+DL+ENHG+GR  + LDTL+FDEADQLLEMGFRP+IE ILR+L  +K  RQTL+FSATMPGDVQA+AS+A++  Y+VVDCVGE+E+THQHV QKFAVVP AE +PRLLAT+L+A+EDPDHK+IVFFVAARIVQ+ + L
Sbjct:  103 EITTGQFNDLDLSKNTHAAISDVLGYANMTKVQEQSIPVCLTGVDVLAKAKTGTGKTVAFLIPAIERAA--KRGFGK-----GVSALIISPTRELAQQIAVEAQQIMSFHRLKLMCSVGGVNVNRDLNQLNSGAPDIMVATPGRLLDLMENHGLGRDMRDLDTLVFDEADQLLEMGFRPAIENILRNLQASKTYRQTLMFSATMPGDVQAIASIAMKPSYEVVDCVGEEENTHQHVPQKFAVVPMAEQIPRLLATILKAKEDPDHKIIVFFVAARIVQLHAEL 378          
BLAST of mRNA_H-elongata_contig14402.3025.1 vs. uniprot
Match: A0A6H5JHU6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHU6_9PHAE)

HSP 1 Score: 407 bits (1047), Expect = 1.090e-137
Identity = 213/279 (76.34%), Postives = 247/279 (88.53%), Query Frame = 1
Query:    1 EVPAGLFSDLDLHRSTHAAISDVMGYTSMTKVQEQSIPVCITGVDVLAKAKTGTGKTLAFLIPAIERAAAATAGGGKANRFAGISAVVISPTRELAQQIAVEAQQ--VMSFHRLKLMCSVGGTNVNRDLNQLASGAPDILVATPGRLVDLLENHGVGRLTKTLDTLIFDEADQLLEMGFRPSIEKILRSLP-NKNDRQTLLFSATMPGDVQAMASLALRNEYKVVDCVGEDEDTHQHVSQKFAVVPSAELMPRLLATLLEAREDPDHKVIVFFVAARIV 828
            E+  G FSD++L ++THAAISDV+GY +MTKVQEQSIPVC+TGVDVLAKAKTGTGKT+AFLIPAIERAA    G GK     G+SA++ISPTRELAQQIAVEAQQ  +MSFHRLKLMCSVGG NVNRDLNQL SGAPDI+VATPGRL+DLLENHG+GR  + LDTLIFDEADQLLEMGFRP+IE ILR+L  +K  RQTL+FSATMPGDVQA+AS+A++  Y+VVDCVGE+E+THQHV QKFAVVP AE +PRLLAT+L+A+EDPDHK+IVFFVAARI+
Sbjct:   41 EITTGQFSDVNLSKNTHAAISDVLGYANMTKVQEQSIPVCLTGVDVLAKAKTGTGKTVAFLIPAIERAA--KRGFGK-----GVSALIISPTRELAQQIAVEAQQACIMSFHRLKLMCSVGGVNVNRDLNQLNSGAPDIMVATPGRLLDLLENHGLGRSMRDLDTLIFDEADQLLEMGFRPAIENILRNLQASKASRQTLMFSATMPGDVQAIASIAMKPSYEVVDCVGEEENTHQHVPQKFAVVPMAEQIPRLLATILKAKEDPDHKIIVFFVAARIL 312          
BLAST of mRNA_H-elongata_contig14402.3025.1 vs. uniprot
Match: A0A6H5L2V2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2V2_9PHAE)

HSP 1 Score: 279 bits (714), Expect = 5.360e-87
Identity = 154/280 (55.00%), Postives = 194/280 (69.29%), Query Frame = 1
Query:   19 FSDLDLHRSTHAAISDVMGYTSMTKVQEQSIPVCITGVDVLAKAKTGTGKTLAFLIPAIERAAAATAGGGKANRFAGISAVVISPTRELAQQIAVEAQQVMSFHRLKLMCSVGGTNVNRDLNQLASGAPDILVATPGRLVDLLENHGVGRLTKTLDTLIFDEADQLLEMGFRPSIEKILRSLPNKNDRQTLLFSATMPGDVQAMASLALRNEYKVVDCVGEDEDTHQHVSQKFAVVPSAELMPRLLATLLE--AREDPDHKVIVFFVAARIVQVGSNLAS 852
            F+ L L   T  AI++V+GY ++TKVQ  SIP  + G DVLAKAKTGTGKTL+FL+PAIE  A       +A R  GIS ++ISPTRELAQQIA EA QV++FH + L+C VGGTN+  D+       PDI+VATPGRL D L+N+G+ +    L  LIFDEADQLLEMGFRP+IE ILR +P+  DRQTLLFSATMPGDV+ +A LAL+  Y+ VDCVGE+E THQHV Q++ V    + +  L   L E  A +   HK+IVFF  AR+ Q  + L +
Sbjct:   46 FAQLPLSAPTQRAIAEVLGYVTLTKVQNDSIPPALAGHDVLAKAKTGTGKTLSFLLPAIEGVARTP----RAQRK-GISVLIISPTRELAQQIADEANQVLTFHDMSLICVVGGTNIKADIRGFRD-RPDIVVATPGRLNDHLDNNGLAKDMAGLSHLIFDEADQLLEMGFRPAIEAILRYMPHSRDRQTLLFSATMPGDVRKIAQLALKERYEFVDCVGEEESTHQHVPQQYTVCGQDQQVEELCQLLRENMAADPRGHKIIVFFTTARLTQFYAELCN 319          
BLAST of mRNA_H-elongata_contig14402.3025.1 vs. uniprot
Match: D8LUB6_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUB6_ECTSI)

HSP 1 Score: 276 bits (705), Expect = 3.460e-85
Identity = 153/280 (54.64%), Postives = 192/280 (68.57%), Query Frame = 1
Query:   19 FSDLDLHRSTHAAISDVMGYTSMTKVQEQSIPVCITGVDVLAKAKTGTGKTLAFLIPAIERAAAATAGGGKANRFAGISAVVISPTRELAQQIAVEAQQVMSFHRLKLMCSVGGTNVNRDLNQLASGAPDILVATPGRLVDLLENHGVGRLTKTLDTLIFDEADQLLEMGFRPSIEKILRSLPNKNDRQTLLFSATMPGDVQAMASLALRNEYKVVDCVGEDEDTHQHVSQKFAVVPSAELMPRLLATLLE--AREDPDHKVIVFFVAARIVQVGSNLAS 852
            F+ L L   T  AI++V+GY ++TKVQ  SIP  + G DVLAKAKTGTGKTL+FL PAIE  A       +A R  GI  ++ISPTRELAQQIA EA QV++FH + L+C VGGTN+  D+       PDI+VATPGRL D L+N+G+ +    L  LIFDEADQLLEMGFRP+IE ILR +P+  DRQTLLFSATMPGDV+ +A LAL+  Y+ VDCVGE+E THQHV Q++ V    + +  L   L E  A +   HK+IVFF  AR+ Q  + L +
Sbjct:  146 FAQLPLSAPTQRAIAEVLGYATLTKVQNDSIPPALAGHDVLAKAKTGTGKTLSFLFPAIEGVARTP----RAQRK-GIWVLIISPTRELAQQIADEANQVLTFHDMSLICVVGGTNIKADIRGFRD-RPDIVVATPGRLNDHLDNNGLAKDMAGLSHLIFDEADQLLEMGFRPAIEAILRYMPHSRDRQTLLFSATMPGDVRKIAQLALKERYEFVDCVGEEESTHQHVPQQYTVCGQDQQVEELCQLLRENMAADPRGHKIIVFFTTARLTQFYAELCN 419          
BLAST of mRNA_H-elongata_contig14402.3025.1 vs. uniprot
Match: A0A835ZDJ4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDJ4_9STRA)

HSP 1 Score: 270 bits (689), Expect = 3.320e-84
Identity = 147/280 (52.50%), Postives = 185/280 (66.07%), Query Frame = 1
Query:   19 FSDLDLHRSTHAAISDVMGYTSMTKVQEQSIPVCITGVDVLAKAKTGTGKTLAFLIPAIERAAAATAGGGKANRFAGISAVVISPTRELAQQIAVEAQQVMSFHRLKLMCSVGGTNVNRDLNQLASGAPDILVATPGRLVDLLENHGVGRLTKTLDTLIFDEADQLLEMGFRPSIEKILRSLPNKNDRQTLLFSATMPGDVQAMASLALRNEYKVVDCVGEDEDTHQHVSQKFAVVPSAELMPRLLATLLEAREDPD--HKVIVFFVAARIVQVGSNLAS 852
            F  L ++      I+  MGY +MTKVQ  +IPV +TGVD+LAKAKTGTGKTLAFLIP +ERA  +        R  GIS ++ISPTRELAQQI  EA     F  ++L C  GGTN+  DL +L+   PDILVATPGRL D LEN  + R    L  L+ DEADQLLEMGFRP+IE  LR+LP  + RQTLLFSATMP DV+A++ +A+R ++++VD VGE+E TH+HV Q   V      +P+LL  L  A  D D  HK+IVFF  AR+ Q  + L +
Sbjct:    6 FESLPINADLKRGITQAMGYETMTKVQSATIPVSLTGVDILAKAKTGTGKTLAFLIPCVERALRSP------RRAGGISVLIISPTRELAQQIHDEAALATRFMGMRLQCIFGGTNIKADLRKLSDATPDILVATPGRLNDHLENQTLARQLAGLSALVLDEADQLLEMGFRPAIEAALRNLPPPSARQTLLFSATMPQDVRAISRIAMRPDFELVDTVGEEESTHEHVPQSAVVTTMEHGVPQLLLLLRRAVHDADGAHKIIVFFTTARLTQFHAELCN 279          
BLAST of mRNA_H-elongata_contig14402.3025.1 vs. uniprot
Match: A0A7S3XXC6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXC6_HETAK)

HSP 1 Score: 265 bits (677), Expect = 9.430e-83
Identity = 149/272 (54.78%), Postives = 182/272 (66.91%), Query Frame = 1
Query:   19 FSDLDLHRSTHAAISDVMGYTSMTKVQEQSIPVCITGVDVLAKAKTGTGKTLAFLIPAIERAAAATAGGGKANRFAGISAVVISPTRELAQQIAVEAQQVMSFHRLKLMCSVGGTNVNRDLNQLASGAPDILVATPGRLVDLLENH-GVGRLTKTLDTLIFDEADQLLEMGFRPSIEKILRSLPNKNDRQTLLFSATMPGDVQAMASLALRNEYKVVDCVGEDEDTHQHVSQKFAVVPSAELMPRLLATLLEAREDPDHKVIVFFVAARIVQ 831
            F+D  L   T  A+++V+GY  MT+VQ Q++PV + G DVLAKAKTGTGKTL FL+PAIER  AA A    A R   +SA+VISPTRELAQQIA EA+Q++ FH L L    GGT + +D++      PDILVATPGRL+D LEN  G       L  LI DE DQLL+MGFRPSI KIL+ LP K+ RQTLLFSATMP DVQ MA   L   Y++VDCVG++  THQ V Q F V    + +  L   + E R+ P HK+IVFF  AR+ Q
Sbjct:  103 FADAPLAVGTQRALAEVLGYERMTRVQAQTLPVSLQGKDVLAKAKTGTGKTLGFLLPAIERILAAPA----AARRGRVSALVISPTRELAQQIAEEAKQLLKFHDLGLQVVFGGTKMTKDVSSFNRRTPDILVATPGRLLDHLENTPGFREACAGLQCLILDECDQLLDMGFRPSIVKILQHLPPKSGRQTLLFSATMPQDVQEMARFGLNPSYELVDCVGKEAGTHQQVPQTFLVCSVEDQLGELAQIIAEGRQVPGHKLIVFFTTARLTQ 370          
BLAST of mRNA_H-elongata_contig14402.3025.1 vs. uniprot
Match: A0A7S4D8Q7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8Q7_HETAK)

HSP 1 Score: 265 bits (677), Expect = 1.560e-81
Identity = 149/272 (54.78%), Postives = 182/272 (66.91%), Query Frame = 1
Query:   19 FSDLDLHRSTHAAISDVMGYTSMTKVQEQSIPVCITGVDVLAKAKTGTGKTLAFLIPAIERAAAATAGGGKANRFAGISAVVISPTRELAQQIAVEAQQVMSFHRLKLMCSVGGTNVNRDLNQLASGAPDILVATPGRLVDLLENH-GVGRLTKTLDTLIFDEADQLLEMGFRPSIEKILRSLPNKNDRQTLLFSATMPGDVQAMASLALRNEYKVVDCVGEDEDTHQHVSQKFAVVPSAELMPRLLATLLEAREDPDHKVIVFFVAARIVQ 831
            F+D  L   T  A+++V+GY  MT+VQ Q++PV + G DVLAKAKTGTGKTL FL+PAIER  AA A    A R   +SA+VISPTRELAQQIA EA+Q++ FH L L    GGT + +D++      PDILVATPGRL+D LEN  G       L  LI DE DQLL+MGFRPSI KIL+ LP K+ RQTLLFSATMP DVQ MA   L   Y++VDCVG++  THQ V Q F V    + +  L   + E R+ P HK+IVFF  AR+ Q
Sbjct:   23 FADAPLAVGTQRALAEVLGYERMTRVQAQTLPVSLQGKDVLAKAKTGTGKTLGFLLPAIERILAAPA----AARRGRVSALVISPTRELAQQIAEEAKQLLKFHDLGLQVVFGGTKMTKDVSSFNRRTPDILVATPGRLLDHLENTPGFREACAGLQCLILDECDQLLDMGFRPSIVKILQHLPPKSGRQTLLFSATMPQDVQEMARFGLNPSYELVDCVGKEAGTHQQVPQTFLVCSVEDQLGELAQIIAEGRQVPGHKLIVFFTTARLTQ 290          
BLAST of mRNA_H-elongata_contig14402.3025.1 vs. uniprot
Match: A0A7S0YY46_9CRYP (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0YY46_9CRYP)

HSP 1 Score: 262 bits (670), Expect = 5.010e-81
Identity = 148/285 (51.93%), Postives = 191/285 (67.02%), Query Frame = 1
Query:    1 EVPAGLFSDLDLHRSTHAAISDVMGYTSMTKVQEQSIPVCITGVDVLAKAKTGTGKTLAFLIPAIERAAAATAGGGKANRFAGISAVVISPTRELAQQIAVEAQQVMSFHR-LKLMCSVGGTNVNRDLNQLASGAPDILVATPGRLVDLLENHGVGRLTKTLDTLIFDEADQLLEMGFRPSIEKILRSLPNKNDRQTLLFSATMPGDVQAMASLALRN--EYKVVDCVGEDEDTHQHVSQKFAVVPSAELMPRLLATLLEAREDPDHKVIVFFVAARIVQVGSNL 846
            ++    F +L +H  T  +I++VM Y +MT VQ+QSIPV +TGVD+LAKAKTGTGKTL+FLIPA+E          +     GIS ++ISPTRELAQQI  EA+ V+  HR + +MC VGGTN+NRD+ Q     P +LVATPGRL D LEN G+ +L   L  LIFDEADQLL+MGFRP+I  +L+ LP K+ RQTLLFSATMP DV+ +A LA+R+   +  VD VG +E+THQHV Q + V     L P L+  + E    P +K+I FF  AR  Q+ S L
Sbjct:   37 QMTTSAFDELQVHPLTKKSIAEVMRYQTMTIVQQQSIPVALTGVDLLAKAKTGTGKTLSFLIPAVEHVI-------RDPPVRGISVLIISPTRELAQQIEEEAKMVVQMHRTITVMCIVGGTNMNRDI-QGFKRPPSLLVATPGRLNDHLENSGLAQLCSQLRCLIFDEADQLLDMGFRPAILTMLKFLPPKDTRQTLLFSATMPKDVKTIADLAMRSAQNFAYVDTVGAEENTHQHVEQTYVVASKQGLAPELVTLVREGMMTPGYKIIAFFPTARQTQLYSEL 313          
BLAST of mRNA_H-elongata_contig14402.3025.1 vs. uniprot
Match: A0A5J4YBS8_9CHLO (DEAD box helicase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YBS8_9CHLO)

HSP 1 Score: 262 bits (669), Expect = 4.400e-80
Identity = 140/281 (49.82%), Postives = 193/281 (68.68%), Query Frame = 1
Query:   19 FSDLDLHRSTHAAISDVMGYTSMTKVQEQSIPVCITGVDVLAKAKTGTGKTLAFLIPAIERAAAATAGGGKANRFAGISAVVISPTRELAQQIAVEAQQVMSFHRLKLMCSVGGTNVNRDLNQLASGAPDILVATPGRLVDLLENHGVGRLTKTLDTLIFDEADQLLEMGFRPSIEKILRSLPNKNDRQTLLFSATMPGDVQAMASLALRNEYKVVDCVGEDEDTHQ--HVSQKFAVVPSAELMPRLLATLLEAR-EDPDHKVIVFFVAARIVQVGSNLAS 852
            F+DL +  +T  A+++V+ Y   T VQ QS+P  + GVD++ KAKTGTGKTLAFLIPA+ER A  T+G         IS +VISPTRELA QIAVEA+ +  FH + + C VGGTN++ ++ ++    P ILVATPGRLVD L+N    +    L+TL+FDEAD+LL+MGFRP +EKILR+LPNK+ RQTLLFSAT P D+Q +A  ALR  ++++D VGED  TH    V Q   +VP  ++  +L+  L + R  DP+HKV+VFF  A++ Q+ + + +
Sbjct:  113 FADLPICSATKRALAEVLKYDLCTTVQAQSVPPSLQGVDMVCKAKTGTGKTLAFLIPALERMAGKTSGK--------ISTLVISPTRELASQIAVEAEALGRFHDITVQCVVGGTNIDSEIKKIKRSTPHILVATPGRLVDHLQNRDAAQFMTKLETLVFDEADRLLDMGFRPDVEKILRTLPNKSTRQTLLFSATFPQDIQELAKFALRPGFQLIDTVGEDS-THSSSQVQQSVMLVPMEQMAAQLIHILADHRASDPNHKVLVFFTTAKLTQLYAEMCN 384          
BLAST of mRNA_H-elongata_contig14402.3025.1 vs. uniprot
Match: A0A7S3XX82_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX82_HETAK)

HSP 1 Score: 264 bits (674), Expect = 6.170e-80
Identity = 146/278 (52.52%), Postives = 184/278 (66.19%), Query Frame = 1
Query:   19 FSDLDLHRSTHAAISDVMGYTSMTKVQEQSIPVCITGVDVLAKAKTGTGKTLAFLIPAIERAAAATAGGGKANRFAGISAVVISPTRELAQQIAVEAQQVMSFHRLKLMCSVGGTNVNRDLNQLASGAPDILVATPGRLVDLLENHGVG--RLTKTLDTLIFDEADQLLEMGFRPSIEKILRSLPNKNDRQTLLFSATMPGDVQAMASLALRNEYKVVDCVGEDEDTHQHVSQKFAVVPSAELMPRLLATLLEAREDPDHKVIVFFVAARIVQVGSNL 846
            F+DL LH  T  A+ +V+GY+ MT VQ Q++PV + G DVLAKAKTGTGKTL FL+P IE+  AA A    A R   +SA+VISPTRELAQQIA EA+Q++ FH L L   VGGT +++D   L    PDI+VATPGRL  LL+    G       L  L+ DE DQLL+MGFRPSI +ILR LP K  RQ+LLFSAT+P DVQ +A L L+  Y++VDCVGE+E TH+HV Q   V      +  L   + E R+ P HK+IVFF  AR+ Q  + +
Sbjct:  139 FTDLQLHAGTKRALKEVLGYSDMTHVQAQTLPVSLQGKDVLAKAKTGTGKTLGFLLPTIEQVLAAPA----AARRGRVSALVISPTRELAQQIAEEAKQLLKFHDLGLQTVVGGTKMSKDAAALRRRTPDIVVATPGRLEALLDEDTAGFRGACAGLRVLVMDECDQLLDMGFRPSILRILRGLPPKAGRQSLLFSATLPRDVQEIAGLGLKPSYELVDCVGEEESTHRHVPQSVLVCSMETQLAELAQIVEEGRQVPGHKIIVFFTTARLTQFYAEI 412          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14402.3025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSF4_ECTSI8.780e-14075.97DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JHU6_9PHAE1.090e-13776.34Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L2V2_9PHAE5.360e-8755.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LUB6_ECTSI3.460e-8554.64DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A835ZDJ4_9STRA3.320e-8452.50P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S3XXC6_HETAK9.430e-8354.78Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4D8Q7_HETAK1.560e-8154.78Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0YY46_9CRYP5.010e-8151.93Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A5J4YBS8_9CHLO4.400e-8049.82DEAD box helicase n=1 Tax=Trebouxia sp. A1-2 TaxID... [more]
A0A7S3XX82_HETAK6.170e-8052.52Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14402contigH-elongata_contig14402:374..3589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score419.1
Seed ortholog evalue1.7e-114
Seed eggNOG ortholog2880.D7FSF4
Preferred nameMSS116
KEGG koko:K17679
GOsGO:0000166,GO:0000372,GO:0000373,GO:0000375,GO:0000376,GO:0000377,GO:0000959,GO:0000963,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003725,GO:0003727,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006351,GO:0006354,GO:0006390,GO:0006392,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010501,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019438,GO:0030554,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0033592,GO:0034337,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0090615,GO:0097159,GO:0097367,GO:0097617,GO:0097659,GO:0140053,GO:0140098,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0342@2759
EC3.6.4.13
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-04_000630.1
Exons6
Model size864
Cds size864
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14402.3025.1prot_H-elongata_contig14402.3025.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14402 374..3589 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929854.1706913-CDS-H-elongata_contig14402:373..5241622929854.1706913-CDS-H-elongata_contig14402:373..524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14402 374..524 -
1691679184.1433814-CDS-H-elongata_contig14402:373..5241691679184.1433814-CDS-H-elongata_contig14402:373..524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14402 374..524 -
1622929854.1951294-CDS-H-elongata_contig14402:1252..13921622929854.1951294-CDS-H-elongata_contig14402:1252..1392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14402 1253..1392 -
1691679184.1600993-CDS-H-elongata_contig14402:1252..13921691679184.1600993-CDS-H-elongata_contig14402:1252..1392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14402 1253..1392 -
1622929854.222139-CDS-H-elongata_contig14402:1698..18401622929854.222139-CDS-H-elongata_contig14402:1698..1840Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14402 1699..1840 -
1691679184.172213-CDS-H-elongata_contig14402:1698..18401691679184.172213-CDS-H-elongata_contig14402:1698..1840Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14402 1699..1840 -
1622929854.2394876-CDS-H-elongata_contig14402:2271..23871622929854.2394876-CDS-H-elongata_contig14402:2271..2387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14402 2272..2387 -
1691679184.1799397-CDS-H-elongata_contig14402:2271..23871691679184.1799397-CDS-H-elongata_contig14402:2271..2387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14402 2272..2387 -
1622929854.255476-CDS-H-elongata_contig14402:2797..29851622929854.255476-CDS-H-elongata_contig14402:2797..2985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14402 2798..2985 -
1691679184.1870806-CDS-H-elongata_contig14402:2797..29851691679184.1870806-CDS-H-elongata_contig14402:2797..2985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14402 2798..2985 -
1622929854.2767234-CDS-H-elongata_contig14402:3462..35891622929854.2767234-CDS-H-elongata_contig14402:3462..3589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14402 3463..3589 -
1691679184.1945815-CDS-H-elongata_contig14402:3462..35891691679184.1945815-CDS-H-elongata_contig14402:3462..3589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14402 3463..3589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14402.3025.1

>prot_H-elongata_contig14402.3025.1 ID=prot_H-elongata_contig14402.3025.1|Name=mRNA_H-elongata_contig14402.3025.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=288bp
EVPAGLFSDLDLHRSTHAAISDVMGYTSMTKVQEQSIPVCITGVDVLAKA
KTGTGKTLAFLIPAIERAAAATAGGGKANRFAGISAVVISPTRELAQQIA
VEAQQVMSFHRLKLMCSVGGTNVNRDLNQLASGAPDILVATPGRLVDLLE
NHGVGRLTKTLDTLIFDEADQLLEMGFRPSIEKILRSLPNKNDRQTLLFS
ATMPGDVQAMASLALRNEYKVVDCVGEDEDTHQHVSQKFAVVPSAELMPR
LLATLLEAREDPDHKVIVFFVAARIVQVGSNLASPCK*
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mRNA from alignment at H-elongata_contig14402:374..3589-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14402.3025.1 ID=mRNA_H-elongata_contig14402.3025.1|Name=mRNA_H-elongata_contig14402.3025.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3216bp|location=Sequence derived from alignment at H-elongata_contig14402:374..3589- (Himanthalia elongata Himel1 dioecious)
GAGGTCCCCGCGGGCCTGTTCAGCGACCTCGACCTGCACAGGAGCACGCA CGCCGCAATCTCTGACGTGATGGGCTACACCAGCATGACCAAAGTACAGG AGCAGTCGATCCCGGTGTGCATCACGGGTGAGAGAAAGGAGGGGGAAGCA CCTCGTGTGCATAGCAAAGTCATCAGAGTATTGTGGATAAAGTACAACCT ACCGGCGGCATGACACACGACTATACAAATGAGCCGAACACAACCCTCTG GCTTGCACCAGACGGGGATGCCCGAGCGCGTGGTCCGGAAGGCGACCAGT CAACCCCCGTCTTTACCGGCGGGAGACAAGCTTGATGCATCCTACTTCAT CTCTAGCATCAGAGGGTCCCTTGTTCGGGATTCTTGTCTGTTTAAAAAAA AAAAATTATCTAGCGCATACTTTAGAAGGACCCGCTCAGACATGGACCTC AAGACTTGTTCGACAGCGCCACGGATGTTGAGTAGGCGTAGCGACCCCAT ACCATACCATATCATATCGGCGGTCGTAGGAAGCAGCAAGAAAACAATAT GGTTTCCTGGAGACCTTAAAAATTACTACCCGAACGTCCTCTTCGATCTC GAAGGCGTGGACGTGCTCGCAAAGGCCAAGACGGGCACCGGCAAGACGCT AGCGTTCCTCATCCCGGCGATCGAGAGGGCGGCGGCAGCTACTGCCGGCG GGGGGAAGGCGAATCGCTTCGCGGGGATATCGGCGGTCGTTATCAGCCCC ACGCGCGAGCTCGCGCAGCAGATCGCGGTGGAGGCCCAGCAGGTTGGTCT GGGAGATAACGCTCGCCCGCTTTACAATCAATGAGGCACACGGTAGATGG CGTGCTATCTCGATCACTCCGAGTACGTGTTGATGGCCGCGGCGCTAAGG CACTAAAGAGATTGAAATCATGTGGAAGTACTCAGAATGACTACTTAAGA TCAGACGACGAGGGGTGGCCGACCAGATTCATGTCTGTCGTCGTTTGAAC TCGGAGAGGTGGTGGAGATGAGATATTTCTGTCACGCGCGCATGCACAGC ACGGGGAGGCGTGATCCGATCCTACCGTGGGGATCGTGTGTCGTTAGTAC AGAGCCCCGGAAGATTGGTCAAGATAAAATCTATGACGTGTGACCTCTCC GTATCATGCCTTCTGCTTGCTATGCTCTGCGCTTTTTCCAATGTCTTGGA AGGTGATGTCATTTCACCGCCTCAAACTTATGTGCTCCGTCGGGGGAACT AACGTCAACCGCGACCTCAACCAACTAGCATCGGGAGCTCCTGACATCCT AGTGGCCACTCCTGGCAGGTACCGATATCACTGATTCACTGACTGACTCG CTCGCCCATTCGAAAGTGTCTGTTCCTCCAATACCCTATTTTTTGTTTTT AGTATTGCATCTGTCTGTGTGAGTCGCTCGGCGTTCGCTCATCGGCTGTT TCAAGAGCTTCTCATGATGTCATGTATTCCACAGAAATGTAACACAGCTC GTTGTTACTGGAGGACGTATCGAATGGGATTGGCGTTTGTAGATTTTTTT CTGATCATCCCATGGTTACGGAAATGTGTATGTGTGAGTATGTTTGTGTT TCTCACGAATTCTCTGTTGTATTTACCATTTTTGCGGTCTATTAGCCTCC ATGTTTACGCGATATCACCAGGCTACAAATTGTAACAAAAAACAAGTTTC TGAAGCCAAGCTTCTCGCTGCTCTTATTGCCCCCCTGGTAACCGTGTAGG CTCGTGGACTTGCTTGAAAACCACGGGGTGGGTCGCCTCACAAAAACGCT GGACACGCTAATATTTGACGAAGCCGATCAACTCCTGGAGATGGGCTTCC GTCCTAGCATCGAAAAAATTCTCAGGAGTTTACCCAACAAGGTGAGCTAC GCCGGGGGAGAGGGGGGTGGACGCTCGTTTGGGGTATGAATTAATCGAAG CGAGTATGGCTCTCATCGCTCGAAGACCTCTGGTCGCACCATAGCTTTCA GATATGCACCCGTGCTAGACGAATACCGCTTTTGGGGGCGGAAAGCTTCG GTGCTGCTGTACACCACACGCAGCAGTCACGGGACACGATCTCTCCATTA AATTCGGGGTGACGACCCCTTAAGCCTGTGCGTTAAATGAGGTGCCTAGA CTGGTCGCTGCTGCTGCTGTTGCTGCTGTTGCTTCACTCGCCATCAGAAC GACCGGCAGACACTGCTCTTCAGCGCGACAATGCCTGGAGACGTTCAGGC GATGGCCAGCCTCGCCTTACGGAATGAGTACAAGGTCGTGGACTGTGTGG GGGAAGATGAAGACACCCACCAGCACGTCTCGCAGAAGTGACTTTACTTT ATTTTACTGCGATGTAGATTAGAGTACCCCGGCAGCGTGCAGTGTGGTGT GGTGTGGTGCAGCGCAGAGTCTGAGCCACTGAAAGTTGCGCGCTGCGCGG GCCCGTGAACGTAAGCCATGGACACCGCTCGTTGCGGCAAAACCATGAGC TCATCAGTAGCGTCTAAGTCTTGAAAACAATTAGCGTTTTTGGGAGGGGT GAGGGAAGATAAGCCCCCCCCCCAGCCACGCCTACTTAATGACAGACCTC AGATCCCCCCCGCCCCTTCCATCATTGAAGAGGGCATATGATACTGGTGA GGATAAATATCGTAGTTTTTTACAAGACATCCCAACCGCCGCCACACTAA AGCGAGGACACGGAGTTGGGGGTTTGGTCGAGCAGCTTCTGGAAATTGTT GATAGATGAACGCGCGCTTGACGGACGACCGCGTGAACACCCGGTTCGTC CCCGTCTTTTCGGCGCCCTTTTCAAGACTGTTCTCGTATAAACTTTGGTA GGTGTTTTTTAACCTTCGCGCGTTACCGTATCCCGGTGTCTCTCTCTAGC TATATAGACCGTGATCTCCGCCCCCCTTTCCCGTCCCTTGGTCCATGTAT ATCTAGCTATATGCGTTGCTTTGATGACACGTCATGATCGCATGTGCCCA CGACACGACCTGCTGCGATTTCCCCCCAAGGAAAACAAATGTTCTTTTTG TACGGCTCGCTGAAGGTTTGCGGTAGTCCCCTCGGCGGAGCTCATGCCTC GGCTCTTGGCGACGCTGCTCGAGGCCCGGGAGGATCCGGACCACAAGGTC ATCGTATTTTTCGTGGCGGCGAGAATTGTTCAGGTAGGCTCTAATTTGGC GTCCCCATGTAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig14402:374..3589-

>mRNA_H-elongata_contig14402.3025.1 ID=mRNA_H-elongata_contig14402.3025.1|Name=mRNA_H-elongata_contig14402.3025.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1728bp|location=Sequence derived from alignment at H-elongata_contig14402:374..3589- (Himanthalia elongata Himel1 dioecious)
GAGGTCCCCGCGGGCCTGTTCAGCGACCTCGACCTGCACAGGAGCACGCA
CGCCGCAATCTCTGACGTGATGGGCTACACCAGCATGACCAAAGTACAGG
AGCAGTCGATCCCGGTGTGCATCACGGGAGGTCCCCGCGGGCCTGTTCAG
CGACCTCGACCTGCACAGGAGCACGCACGCCGCAATCTCTGACGTGATGG
GCTACACCAGCATGACCAAAGTACAGGAGCAGTCGATCCCGGTGTGCATC
ACGGGCGTGGACGTGCTCGCAAAGGCCAAGACGGGCACCGGCAAGACGCT
AGCGTTCCTCATCCCGGCGATCGAGAGGGCGGCGGCAGCTACTGCCGGCG
GGGGGAAGGCGAATCGCTTCGCGGGGATATCGGCGGTCGTTATCAGCCCC
ACGCGCGAGCTCGCGCAGCAGATCGCGGTGGAGGCCCAGCAGGCGTGGAC
GTGCTCGCAAAGGCCAAGACGGGCACCGGCAAGACGCTAGCGTTCCTCAT
CCCGGCGATCGAGAGGGCGGCGGCAGCTACTGCCGGCGGGGGGAAGGCGA
ATCGCTTCGCGGGGATATCGGCGGTCGTTATCAGCCCCACGCGCGAGCTC
GCGCAGCAGATCGCGGTGGAGGCCCAGCAGGTGATGTCATTTCACCGCCT
CAAACTTATGTGCTCCGTCGGGGGAACTAACGTCAACCGCGACCTCAACC
AACTAGCATCGGGAGCTCCTGACATCCTAGTGGCCACTCCTGGCAGGTGA
TGTCATTTCACCGCCTCAAACTTATGTGCTCCGTCGGGGGAACTAACGTC
AACCGCGACCTCAACCAACTAGCATCGGGAGCTCCTGACATCCTAGTGGC
CACTCCTGGCAGGCTCGTGGACTTGCTTGAAAACCACGGGGTGGGTCGCC
TCACAAAAACGCTGGACACGCTAATATTTGACGAAGCCGATCAACTCCTG
GAGATGGGCTTCCGTCCTAGCATCGAAAAAATTCTCAGGAGTTTACCCAA
CAAGGCTCGTGGACTTGCTTGAAAACCACGGGGTGGGTCGCCTCACAAAA
ACGCTGGACACGCTAATATTTGACGAAGCCGATCAACTCCTGGAGATGGG
CTTCCGTCCTAGCATCGAAAAAATTCTCAGGAGTTTACCCAACAAGAACG
ACCGGCAGACACTGCTCTTCAGCGCGACAATGCCTGGAGACGTTCAGGCG
ATGGCCAGCCTCGCCTTACGGAATGAGTACAAGGTCGTGGACTGTGTGGG
GGAAGATGAAGACACCCACCAGCACGTCTCGCAGAAAACGACCGGCAGAC
ACTGCTCTTCAGCGCGACAATGCCTGGAGACGTTCAGGCGATGGCCAGCC
TCGCCTTACGGAATGAGTACAAGGTCGTGGACTGTGTGGGGGAAGATGAA
GACACCCACCAGCACGTCTCGCAGAAGTTTGCGGTAGTCCCCTCGGCGGA
GCTCATGCCTCGGCTCTTGGCGACGCTGCTCGAGGCCCGGGAGGATCCGG
ACCACAAGGTCATCGTATTTTTCGTGGCGGCGAGAATTGTTCAGGTAGGC
TCTAATTTGGCGTCCCCATGTAAATAAGTTTGCGGTAGTCCCCTCGGCGG
AGCTCATGCCTCGGCTCTTGGCGACGCTGCTCGAGGCCCGGGAGGATCCG
GACCACAAGGTCATCGTATTTTTCGTGGCGGCGAGAATTGTTCAGGTAGG
CTCTAATTTGGCGTCCCCATGTAAATAA
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