mRNA_H-elongata_contig14398.3021.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14398.3021.1
Unique NamemRNA_H-elongata_contig14398.3021.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14398.3021.1 vs. uniprot
Match: A0A6H5JWH2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWH2_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.980e-35
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 1 
Query:    1 ILALNCLISAYSLSVLYLDGVKYGDRQLTALGMLMSVSFITISRAKPLDKLSPVRPMTSIFHPALFLSILGQVGL 225
            ILALNCLISAYSLSVLYLDGVKYGDRQ+TALGMLMSVSFITISRAKPL KLSPVRP+TSIFHPALFLSILGQ  L
Sbjct: 1237 ILALNCLISAYSLSVLYLDGVKYGDRQMTALGMLMSVSFITISRAKPLSKLSPVRPITSIFHPALFLSILGQFSL 1311
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BLAST of mRNA_H-elongata_contig14398.3021.1 vs. uniprot
Match: A0A7S4D8M0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8M0_HETAK)

HSP 1 Score: 124 bits (311), Expect = 2.040e-31
Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:    1 ILALNCLISAYSLSVLYLDGVKYGDRQLTALGMLMSVSFITISRAKPLDKLSPVRPMTSIFHPALFLSILGQVGL 225
            ILALNCLISAYSLSVLYLDGVKYGD Q+TALGMLMS SFI++SRA PLD+LS VRP +SIFHPALFLSILGQ  L
Sbjct:  429 ILALNCLISAYSLSVLYLDGVKYGDHQMTALGMLMSASFISVSRASPLDRLSRVRPFSSIFHPALFLSILGQFAL 503
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BLAST of mRNA_H-elongata_contig14398.3021.1 vs. uniprot
Match: A0A7S0CEF7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CEF7_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.760e-31
Identity = 58/72 (80.56%), Postives = 69/72 (95.83%), Query Frame = 1 
Query:    1 ILALNCLISAYSLSVLYLDGVKYGDRQLTALGMLMSVSFITISRAKPLDKLSPVRPMTSIFHPALFLSILGQ 216
            ILALNCLISAYSLSVLYLDGVKYGD Q+TA+GML SVSF+++SR+KPL+KLS VRP+TSIFHP+LF+S+LGQ
Sbjct:   15 ILALNCLISAYSLSVLYLDGVKYGDTQMTAMGMLGSVSFMSVSRSKPLNKLSSVRPLTSIFHPSLFISLLGQ 86
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BLAST of mRNA_H-elongata_contig14398.3021.1 vs. uniprot
Match: A0A7S4HIT1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HIT1_9STRA)

HSP 1 Score: 123 bits (309), Expect = 4.130e-31
Identity = 56/72 (77.78%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:    1 ILALNCLISAYSLSVLYLDGVKYGDRQLTALGMLMSVSFITISRAKPLDKLSPVRPMTSIFHPALFLSILGQ 216
            I+ALNCLIS+YSLSVLYLDG+KYGD+Q+TA+GMLMSVSF+++SR+KPL+KLSPV+P+TSIFHP+LF+S+LGQ
Sbjct: 1316 IMALNCLISSYSLSVLYLDGIKYGDKQMTAMGMLMSVSFMSVSRSKPLEKLSPVKPLTSIFHPSLFISLLGQ 1387
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BLAST of mRNA_H-elongata_contig14398.3021.1 vs. uniprot
Match: A0A7S1ZGT6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZGT6_TRICV)

HSP 1 Score: 123 bits (308), Expect = 5.610e-31
Identity = 56/72 (77.78%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:    1 ILALNCLISAYSLSVLYLDGVKYGDRQLTALGMLMSVSFITISRAKPLDKLSPVRPMTSIFHPALFLSILGQ 216
            ILALNCLIS+YSLSVLYLDG+KYGD+Q+TA+GMLMSVSF+++SR+KPL++LSPV+P+TSIFHP+LF+S+LGQ
Sbjct:  777 ILALNCLISSYSLSVLYLDGIKYGDKQMTAMGMLMSVSFMSVSRSKPLERLSPVKPLTSIFHPSLFISLLGQ 848
[Close]
BLAST of mRNA_H-elongata_contig14398.3021.1 vs. uniprot
Match: A0A7S2RLD3_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RLD3_9STRA)

HSP 1 Score: 121 bits (304), Expect = 6.520e-31
Identity = 56/75 (74.67%), Postives = 72/75 (96.00%), Query Frame = 1 
Query:    1 ILALNCLISAYSLSVLYLDGVKYGDRQLTALGMLMSVSFITISRAKPLDKLSPVRPMTSIFHPALFLSILGQVGL 225
            ILALNCLISAYSLSVLYLDGVKYGD Q+T++G+LMS+SF+++SR+KPLD+LSPV+P+TSIFHP+LF+S+LGQ  +
Sbjct:  194 ILALNCLISAYSLSVLYLDGVKYGDVQMTSMGILMSISFMSVSRSKPLDRLSPVKPLTSIFHPSLFISLLGQFSI 268
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BLAST of mRNA_H-elongata_contig14398.3021.1 vs. uniprot
Match: A0A7S1ZNT5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZNT5_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.250e-30
Identity = 59/72 (81.94%), Postives = 70/72 (97.22%), Query Frame = 1 
Query:    1 ILALNCLISAYSLSVLYLDGVKYGDRQLTALGMLMSVSFITISRAKPLDKLSPVRPMTSIFHPALFLSILGQ 216
            ILALNCLISAYSLSVLYLDGVKYGD Q+T++GMLMSVSF+++SR+KPL+KLS VRP+TSIFHPALF+S+LGQ
Sbjct:  363 ILALNCLISAYSLSVLYLDGVKYGDVQMTSMGMLMSVSFMSVSRSKPLEKLSSVRPLTSIFHPALFISLLGQ 434
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BLAST of mRNA_H-elongata_contig14398.3021.1 vs. uniprot
Match: A0A7S2ELI2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ELI2_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.430e-30
Identity = 59/72 (81.94%), Postives = 70/72 (97.22%), Query Frame = 1 
Query:    1 ILALNCLISAYSLSVLYLDGVKYGDRQLTALGMLMSVSFITISRAKPLDKLSPVRPMTSIFHPALFLSILGQ 216
            ILALNCLISAYSLSVLYLDGVKYGD Q+T++GMLMSVSF+++SR+KPL+KLS VRP+TSIFHPALF+S+LGQ
Sbjct: 1362 ILALNCLISAYSLSVLYLDGVKYGDVQMTSMGMLMSVSFMSVSRSKPLEKLSSVRPLTSIFHPALFISLLGQ 1433
[Close]
BLAST of mRNA_H-elongata_contig14398.3021.1 vs. uniprot
Match: B5YNZ0_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNZ0_THAPS)

HSP 1 Score: 121 bits (303), Expect = 2.660e-30
Identity = 59/74 (79.73%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:    1 ILALNCLISAYSLSVLYLDGVKYGDRQLTALGMLMSVSFITISRAKPLDKLSPVRPMTSIFHPALFLSILGQVG 222
            ILALNCLISAYSLSVLYLDGVKYGD Q+TA+GML SVS++++SRAKPLDKLS V+P+TSIFHP+LF+S+LGQ G
Sbjct:  902 ILALNCLISAYSLSVLYLDGVKYGDVQMTAMGMLGSVSYMSVSRAKPLDKLSSVKPLTSIFHPSLFVSLLGQFG 975
[Close]
BLAST of mRNA_H-elongata_contig14398.3021.1 vs. uniprot
Match: A0A836CGN5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGN5_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.670e-30
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:    1 ILALNCLISAYSLSVLYLDGVKYGDRQLTALGMLMSVSFITISRAKPLDKLSPVRPMTSIFHPALFLSILGQVGL 225
            ILALNCLISAYSLSVLYLDGVKYGD+Q+TA G+LMS SFI ISR+KPLD+LS VRP+TSIF PALFLSILGQ  L
Sbjct: 1587 ILALNCLISAYSLSVLYLDGVKYGDKQMTAQGILMSASFIAISRSKPLDRLSTVRPLTSIFSPALFLSILGQFAL 1661
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14398.3021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWH2_9PHAE1.980e-3593.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4D8M0_HETAK2.040e-3184.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0CEF7_9STRA2.760e-3180.56Hypothetical protein (Fragment) n=2 Tax=Proboscia ... [more]
A0A7S4HIT1_9STRA4.130e-3177.78Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1ZGT6_TRICV5.610e-3177.78Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2RLD3_9STRA6.520e-3174.67Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1ZNT5_9STRA1.250e-3081.94Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2ELI2_9STRA1.430e-3081.94Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
B5YNZ0_THAPS2.660e-3079.73Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A836CGN5_9STRA2.670e-3082.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14398contigH-elongata_contig14398:49..273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue3.7e-29
Seed eggNOG ortholog2880.D7FQP9
KEGG koko:K14950
KEGG TC3.A.3.10
GOsGO:0000003,GO:0001709,GO:0003674,GO:0003824,GO:0005215,GO:0005388,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006950,GO:0007154,GO:0007275,GO:0008150,GO:0008324,GO:0009267,GO:0009555,GO:0009605,GO:0009846,GO:0009856,GO:0009888,GO:0009987,GO:0009991,GO:0010073,GO:0010152,GO:0012505,GO:0015075,GO:0015085,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0016020,GO:0016021,GO:0016036,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019725,GO:0019829,GO:0021700,GO:0022414,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030154,GO:0031224,GO:0031226,GO:0031667,GO:0031668,GO:0031669,GO:0032501,GO:0032502,GO:0033554,GO:0034220,GO:0042592,GO:0042594,GO:0042623,GO:0042625,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044706,GO:0045165,GO:0046873,GO:0048229,GO:0048507,GO:0048856,GO:0048863,GO:0048865,GO:0048867,GO:0048869,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0071496,GO:0071944,GO:0072503,GO:0072507,GO:0072511,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0099131,GO:0099132
EggNOG free text desc.calcium-transporting ATPase activity
EggNOG OGsCOG0474@1,KOG0209@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categorysignal peptide
Exons1
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929853.6032991-CDS-H-elongata_contig14398:48..2731622929853.6032991-CDS-H-elongata_contig14398:48..273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14398 49..273 -
1691679183.8817344-CDS-H-elongata_contig14398:48..2731691679183.8817344-CDS-H-elongata_contig14398:48..273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14398 49..273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14398.3021.1prot_H-elongata_contig14398.3021.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14398 49..273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14398.3021.1

>prot_H-elongata_contig14398.3021.1 ID=prot_H-elongata_contig14398.3021.1|Name=mRNA_H-elongata_contig14398.3021.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
ILALNCLISAYSLSVLYLDGVKYGDRQLTALGMLMSVSFITISRAKPLDK
LSPVRPMTSIFHPALFLSILGQVGL
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mRNA from alignment at H-elongata_contig14398:49..273-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14398.3021.1 ID=mRNA_H-elongata_contig14398.3021.1|Name=mRNA_H-elongata_contig14398.3021.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig14398:49..273- (Himanthalia elongata Himel1 dioecious)
ATTCTGGCCCTGAATTGCCTCATATCTGCCTACTCTCTGTCGGTCCTGTA
CCTAGACGGGGTCAAATACGGAGACAGGCAGTTGACGGCTCTGGGCATGC
TCATGTCAGTGTCGTTCATCACCATCAGCCGTGCCAAGCCCTTGGACAAG
CTTAGCCCCGTTCGGCCAATGACCTCCATCTTCCACCCGGCTCTCTTCCT
CTCGATTCTCGGCCAGGTCGGGTTG
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Coding sequence (CDS) from alignment at H-elongata_contig14398:49..273-

>mRNA_H-elongata_contig14398.3021.1 ID=mRNA_H-elongata_contig14398.3021.1|Name=mRNA_H-elongata_contig14398.3021.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig14398:49..273- (Himanthalia elongata Himel1 dioecious)
ATTCTGGCCCTGAATTGCCTCATATCTGCCTACTCTCTGTCGGTCCTGTA
CCTAGACGGGGTCAAATACGGAGACAGGCAGTTGACGGCTCTGGGCATGC
TCATGTCAGTGTCGTTCATCACCATCAGCCGTGCCAAGCCCTTGGACAAG
CTTAGCCCCGTTCGGCCAATGACCTCCATCTTCCACCCGGCTCTCTTCCT
CTCGATTCTCGGCCAGGTCGGGTTGATTCTGGCCCTGAATTGCCTCATAT
CTGCCTACTCTCTGTCGGTCCTGTACCTAGACGGGGTCAAATACGGAGAC
AGGCAGTTGACGGCTCTGGGCATGCTCATGTCAGTGTCGTTCATCACCAT
CAGCCGTGCCAAGCCCTTGGACAAGCTTAGCCCCGTTCGGCCAATGACCT
CCATCTTCCACCCGGCTCTCTTCCTCTCGATTCTCGGCCAGGTCGGGTTG
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