mRNA_H-elongata_contig143941.3019.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig143941.3019.1
Unique NamemRNA_H-elongata_contig143941.3019.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig143941.3019.1 vs. uniprot
Match: D7FPK4_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPK4_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 2.530e-41
Identity = 64/74 (86.49%), Postives = 71/74 (95.95%), Query Frame = 1 
Query:    1 MNSIQGVKRINERELEQGLSGKASWHYEYNDSAWIYAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSK 222
            MN IQ +KRINERELEQG+SGKASWH+EY DSAW++AGGFPYDLTEGD+LCVMSQWGEIEDINLCR+KDTGKSK
Sbjct:    1 MNVIQEIKRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSK 74
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BLAST of mRNA_H-elongata_contig143941.3019.1 vs. uniprot
Match: A0A835YJH4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH4_9STRA)

HSP 1 Score: 122 bits (307), Expect = 7.530e-34
Identity = 50/74 (67.57%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:    1 MNSIQGVKRINERELEQGLSGKASWHYEYNDSAWIYAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSK 222
            MN ++ +++INEREL++GL+G ASWH++Y DSAW++ GG  Y+LTEGDV+CV+SQWGEIEDINL RD+DTGKSK
Sbjct:    1 MNVVREIQKINERELKEGLTGSASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSK 74
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BLAST of mRNA_H-elongata_contig143941.3019.1 vs. uniprot
Match: A0A7S3YEY6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEY6_HETAK)

HSP 1 Score: 116 bits (291), Expect = 1.830e-30
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:    1 MNSIQGVKRINERELEQGLSGK-ASWHYEYNDSAWIYAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSK 222
            MN IQ +KRIN+RELE GL+G  ASWH +Y +SAW+Y G  PY LTEGD+LC MSQWGEIEDIN  RDKDTGK K
Sbjct:    1 MNVIQEIKRINDRELEAGLTGTDASWHSKYKNSAWVYVGSIPYALTEGDILCFMSQWGEIEDINYVRDKDTGKPK 75
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BLAST of mRNA_H-elongata_contig143941.3019.1 vs. uniprot
Match: A0A7S2RL84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL84_9STRA)

HSP 1 Score: 113 bits (283), Expect = 3.800e-30
Identity = 51/75 (68.00%), Postives = 61/75 (81.33%), Query Frame = 1 
Query:    1 MNSIQGVKRINERELEQGLSGKA-SWHYEYNDSAWIYAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSK 222
            MN IQ +KRINE EL +G++G A SWH +Y DSA+++ GG PYDL EGDVLCV SQWGE+EDINL RD+ TGKSK
Sbjct:    2 MNVIQEIKRINEEELSRGVAGGAGSWHAQYRDSAYVFVGGLPYDLVEGDVLCVFSQWGEVEDINLVRDEKTGKSK 76
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BLAST of mRNA_H-elongata_contig143941.3019.1 vs. uniprot
Match: W4H400_9STRA (RRM domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4H400_9STRA)

HSP 1 Score: 115 bits (288), Expect = 5.130e-30
Identity = 51/73 (69.86%), Postives = 61/73 (83.56%), Query Frame = 1 
Query:    1 MNSIQGVKRINERELEQGLSGKASWHYEYNDSAWIYAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKS 219
            MN I+ ++R+NE+ELEQG+S + SWH+ Y DSAW+Y GG  YDLTEGD+LCV SQ GEIEDINL RDKDTGKS
Sbjct:    1 MNVIKEIQRLNEQELEQGVSIEGSWHHIYRDSAWVYVGGLSYDLTEGDILCVFSQVGEIEDINLVRDKDTGKS 73
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BLAST of mRNA_H-elongata_contig143941.3019.1 vs. uniprot
Match: A0A0B7B659_9EUPU (RRM domain-containing protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7B659_9EUPU)

HSP 1 Score: 107 bits (268), Expect = 4.970e-29
Identity = 42/74 (56.76%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:    1 MNSIQGVKRINERELEQGLSGKASWHYEYNDSAWIYAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSK 222
            + +++ ++++N+RELE G+ GK SWH EY DSAW++ GG PYDLTEGD++CV SQ+GE+ ++NL RD  TGKSK
Sbjct:    4 LTNVKNIQKLNDRELELGIIGKKSWHDEYKDSAWVFIGGLPYDLTEGDIICVFSQYGEVVNLNLIRDHKTGKSK 77
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BLAST of mRNA_H-elongata_contig143941.3019.1 vs. uniprot
Match: A0A1V9ZVW6_9STRA (U2 snRNP component IST3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVW6_9STRA)

HSP 1 Score: 109 bits (272), Expect = 8.480e-29
Identity = 46/73 (63.01%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    1 MNSIQGVKRINERELEQGLSGKASWHYEYNDSAWIYAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKS 219
            MN ++ ++R+N++EL+QG+  + SWHY Y DSAWIY G   Y+L+EGDVLCV SQ+GEIEDINL RDK+TGKS
Sbjct:    1 MNVVKEIERLNQQELDQGIGYEGSWHYIYRDSAWIYVGSLSYELSEGDVLCVFSQFGEIEDINLVRDKETGKS 73
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BLAST of mRNA_H-elongata_contig143941.3019.1 vs. uniprot
Match: UPI000719AA0E (RNA-binding motif protein, X-linked 2-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719AA0E)

HSP 1 Score: 108 bits (269), Expect = 8.790e-29
Identity = 43/74 (58.11%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:    1 MNSIQGVKRINERELEQGLSGKASWHYEYNDSAWIYAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSK 222
            + +++ + ++NE E++ G+SGK SWH +Y DSAWI+ GG PYDLTEGD++CV SQ+GEI +INL RDK TGK+K
Sbjct:    4 LTNVRNINKLNETEIKLGISGKNSWHNQYKDSAWIFIGGLPYDLTEGDIICVFSQYGEIANINLVRDKKTGKTK 77
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BLAST of mRNA_H-elongata_contig143941.3019.1 vs. uniprot
Match: A0A1Y1WJ56_9FUNG (RRM domain-containing protein (Fragment) n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WJ56_9FUNG)

HSP 1 Score: 107 bits (268), Expect = 1.440e-28
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:    1 MNSIQGVKRINERELEQGLSGKASWHYEYNDSAWIYAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSK 222
            MN +Q +KR+NE E   GL   ASWH +Y DSA+I+ GG P+DLTEGDV+CV SQ+GEI +INL RDK+TGKSK
Sbjct:    3 MNVVQNIKRLNEAEARTGLDQTASWHEQYKDSAYIFVGGLPFDLTEGDVICVFSQYGEIVNINLVRDKETGKSK 76
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BLAST of mRNA_H-elongata_contig143941.3019.1 vs. uniprot
Match: V4BGA1_LOTGI (RRM domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4BGA1_LOTGI)

HSP 1 Score: 108 bits (271), Expect = 1.620e-28
Identity = 45/74 (60.81%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:    1 MNSIQGVKRINERELEQGLSGKASWHYEYNDSAWIYAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSK 222
            + +++ + +IN+RELE G+ GK SWH EY DSAWI+ GG PYDLTEGDV+CV SQ+GE+ +IN+ RDK TGK+K
Sbjct:    4 LTNVKNLNKINQRELELGVIGKKSWHDEYKDSAWIFIGGLPYDLTEGDVICVFSQYGELVNINMVRDKQTGKTK 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143941.3019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPK4_ECTSI2.530e-4186.49RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YJH4_9STRA7.530e-3467.57RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3YEY6_HETAK1.830e-3070.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2RL84_9STRA3.800e-3068.00Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
W4H400_9STRA5.130e-3069.86RRM domain-containing protein n=3 Tax=Aphanomyces ... [more]
A0A0B7B659_9EUPU4.970e-2956.76RRM domain-containing protein n=1 Tax=Arion vulgar... [more]
A0A1V9ZVW6_9STRA8.480e-2963.01U2 snRNP component IST3 n=1 Tax=Thraustotheca clav... [more]
UPI000719AA0E8.790e-2958.11RNA-binding motif protein, X-linked 2-like n=1 Tax... [more]
A0A1Y1WJ56_9FUNG1.440e-2863.51RRM domain-containing protein (Fragment) n=1 Tax=L... [more]
V4BGA1_LOTGI1.620e-2860.81RRM domain-containing protein n=1 Tax=Lottia gigan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143941contigH-elongata_contig143941:776..997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.5
Seed ortholog evalue2.4e-33
Seed eggNOG ortholog2880.D7FPK4
Preferred nameRBMX2
KEGG koko:K07919,ko:K13107,ko:K14807
GOsGO:0000245,GO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005686,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006366,GO:0006396,GO:0006397,GO:0006401,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007623,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009299,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010638,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032268,GO:0032270,GO:0032501,GO:0032774,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0034248,GO:0034250,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0042162,GO:0042752,GO:0042789,GO:0042886,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043487,GO:0043488,GO:0043565,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045727,GO:0045893,GO:0045935,GO:0046483,GO:0046700,GO:0046907,GO:0048511,GO:0048518,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051028,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051641,GO:0051649,GO:0051972,GO:0051973,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070274,GO:0070727,GO:0071011,GO:0071013,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097167,GO:0097525,GO:0097659,GO:0120114,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1904353,GO:1904355,GO:1905661,GO:1905663,GO:1990904,GO:2000112,GO:2000278,GO:2000573,GO:2001141,GO:2001252
EggNOG free text desc.mRNA-containing ribonucleoprotein complex export from nucleus
EggNOG OGsKOG0126@1,KOG0126@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03041,ko04031,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929853.4050364-CDS-H-elongata_contig143941:775..9971622929853.4050364-CDS-H-elongata_contig143941:775..997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143941 776..997 -
1691679183.8260705-CDS-H-elongata_contig143941:775..9971691679183.8260705-CDS-H-elongata_contig143941:775..997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143941 776..997 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143941.3019.1prot_H-elongata_contig143941.3019.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig143941 776..997 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig143941.3019.1

>prot_H-elongata_contig143941.3019.1 ID=prot_H-elongata_contig143941.3019.1|Name=mRNA_H-elongata_contig143941.3019.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MNSIQGVKRINERELEQGLSGKASWHYEYNDSAWIYAGGFPYDLTEGDVL
CVMSQWGEIEDINLCRDKDTGKSK
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mRNA from alignment at H-elongata_contig143941:776..997-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig143941.3019.1 ID=mRNA_H-elongata_contig143941.3019.1|Name=mRNA_H-elongata_contig143941.3019.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig143941:776..997- (Himanthalia elongata Himel1 dioecious)
ATGAACTCTATCCAAGGAGTCAAGCGTATCAACGAAAGGGAGCTTGAGCA
AGGTCTATCAGGCAAGGCTTCGTGGCACTACGAATACAACGACAGTGCAT
GGATCTACGCAGGTGGCTTTCCATACGACCTTACCGAGGGCGACGTGCTC
TGCGTGATGTCGCAGTGGGGTGAGATCGAGGACATTAACCTTTGTCGAGA
CAAAGACACTGGAAAGTCTAAG
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Coding sequence (CDS) from alignment at H-elongata_contig143941:776..997-

>mRNA_H-elongata_contig143941.3019.1 ID=mRNA_H-elongata_contig143941.3019.1|Name=mRNA_H-elongata_contig143941.3019.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig143941:776..997- (Himanthalia elongata Himel1 dioecious)
ATGAACTCTATCCAAGGAGTCAAGCGTATCAACGAAAGGGAGCTTGAGCA
AGGTCTATCAGGCAAGGCTTCGTGGCACTACGAATACAACGACAGTGCAT
GGATCTACGCAGGTGGCTTTCCATACGACCTTACCGAGGGCGACGTGCTC
TGCGTGATGTCGCAGTGGGGTGAGATCGAGGACATTAACCTTTGTCGAGA
CAAAGACACTGGAAAGTCTAAGATGAACTCTATCCAAGGAGTCAAGCGTA
TCAACGAAAGGGAGCTTGAGCAAGGTCTATCAGGCAAGGCTTCGTGGCAC
TACGAATACAACGACAGTGCATGGATCTACGCAGGTGGCTTTCCATACGA
CCTTACCGAGGGCGACGTGCTCTGCGTGATGTCGCAGTGGGGTGAGATCG
AGGACATTAACCTTTGTCGAGACAAAGACACTGGAAAGTCTAAG
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