mRNA_H-elongata_contig143931.3018.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig143931.3018.1
Unique NamemRNA_H-elongata_contig143931.3018.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig143931.3018.1 vs. uniprot
Match: D7G124_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G124_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 2.080e-5
Identity = 24/43 (55.81%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   97 VGAGGILKDHSLGMNYIELGRLQHTSHARQLNAKNVKRIRGSL 225
             GAGG+LK+ SLGM+YI L RL +TSHARQ++ ++VK ++ S+
Sbjct:   60 AGAGGMLKERSLGMHYILLERLINTSHARQISQRSVKLLQQSI 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143931.3018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G124_ECTSI2.080e-555.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143931contigH-elongata_contig143931:150..374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929853.2890887-CDS-H-elongata_contig143931:149..3741622929853.2890887-CDS-H-elongata_contig143931:149..374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143931 150..374 +
1691679183.816943-CDS-H-elongata_contig143931:149..3741691679183.816943-CDS-H-elongata_contig143931:149..374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143931 150..374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143931.3018.1prot_H-elongata_contig143931.3018.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig143931 150..374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig143931.3018.1

>prot_H-elongata_contig143931.3018.1 ID=prot_H-elongata_contig143931.3018.1|Name=mRNA_H-elongata_contig143931.3018.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
RIIIFNLCGAPGGFISDRSRDGQSSLPPGRLVVGAGGILKDHSLGMNYIE
LGRLQHTSHARQLNAKNVKRIRGSL
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mRNA from alignment at H-elongata_contig143931:150..374+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig143931.3018.1 ID=mRNA_H-elongata_contig143931.3018.1|Name=mRNA_H-elongata_contig143931.3018.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig143931:150..374+ (Himanthalia elongata Himel1 dioecious)
CGTATTATTATTTTTAATCTTTGCGGCGCCCCTGGGGGGTTTATTTCCGA
TCGTAGTCGCGATGGTCAGAGTTCTCTACCACCGGGGAGACTCGTTGTTG
GAGCGGGAGGCATCCTGAAAGACCACAGCCTTGGGATGAACTACATAGAA
CTGGGAAGGCTGCAGCACACGAGCCACGCTAGGCAGCTAAACGCGAAAAA
TGTCAAGCGAATTCGTGGATCACTG
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Coding sequence (CDS) from alignment at H-elongata_contig143931:150..374+

>mRNA_H-elongata_contig143931.3018.1 ID=mRNA_H-elongata_contig143931.3018.1|Name=mRNA_H-elongata_contig143931.3018.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig143931:150..374+ (Himanthalia elongata Himel1 dioecious)
CGTATTATTATTTTTAATCTTTGCGGCGCCCCTGGGGGGTTTATTTCCGA
TCGTAGTCGCGATGGTCAGAGTTCTCTACCACCGGGGAGACTCGTTGTTG
GAGCGGGAGGCATCCTGAAAGACCACAGCCTTGGGATGAACTACATAGAA
CTGGGAAGGCTGCAGCACACGAGCCACGCTAGGCAGCTAAACGCGAAAAA
TGTCAAGCGAATTCGTGGATCACTGCGTATTATTATTTTTAATCTTTGCG
GCGCCCCTGGGGGGTTTATTTCCGATCGTAGTCGCGATGGTCAGAGTTCT
CTACCACCGGGGAGACTCGTTGTTGGAGCGGGAGGCATCCTGAAAGACCA
CAGCCTTGGGATGAACTACATAGAACTGGGAAGGCTGCAGCACACGAGCC
ACGCTAGGCAGCTAAACGCGAAAAATGTCAAGCGAATTCGTGGATCACTG
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