mRNA_H-elongata_contig143629.3004.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig143629.3004.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 1.770e-14 Identity = 42/90 (46.67%), Postives = 56/90 (62.22%), Query Frame = 1
Query: 1 DVVGLQETKQDGASEITASEYRVYFSGNCNGVKGKRGQHGVGLAIKEEIVNEAGKDDIAIEYISARFLKARISIKYNF-VTFVVAYAPTE 267
DV+GLQET+++G I Y + +SG G K KRG+ GVG+AIKE + G++ +E IS R +K R+ I VTFVV YAPTE
Sbjct: 190 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 279
BLAST of mRNA_H-elongata_contig143629.3004.1 vs. uniprot
Match: UPI000B99A10F (craniofacial development protein 2-like n=1 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI000B99A10F) HSP 1 Score: 63.2 bits (152), Expect = 3.210e-10 Identity = 37/98 (37.76%), Postives = 54/98 (55.10%), Query Frame = 1
Query: 1 DVVGLQETKQDGASEITASEYRVYFSGNCNGVKGKRGQHGVGLAIKEEIVNEAGKDDIAIEYISARFLKARISIKYNFVTFVVAYAPTEEATGEQKDS 294
DVV LQE + G+ I +Y V +SGN + + G+HG L I ++ + +A +S R K RI ++ +T + AYAPTEEAT E KD+
Sbjct: 20 DVVALQEVRWKGSGRIDKKDYSVLYSGN----EERAGRHGTALIINAKVRHRL----LAFWPVSERMCKIRIKGRFRNLTIISAYAPTEEATDEDKDT 109
BLAST of mRNA_H-elongata_contig143629.3004.1 vs. uniprot
Match: UPI00193E6A31 (craniofacial development protein 2-like n=2 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193E6A31) HSP 1 Score: 59.7 bits (143), Expect = 2.800e-8 Identity = 35/98 (35.71%), Postives = 52/98 (53.06%), Query Frame = 1
Query: 1 DVVGLQETKQDGASEITASEYRVYFSGNCNGVKGKRGQHGVGLAIKEEIVNEAGKDDIAIEYISARFLKARISIKYNFVTFVVAYAPTEEATGEQKDS 294
DVV LQE + G+ I +Y V +SGN + + G+HG I ++ + +A +S K RI ++ +T + AYAPTEEAT E KD+
Sbjct: 20 DVVALQEVRWKGSGRIDKKDYSVLYSGN----EERAGRHGTAFIINAKVRHRI----LAFWPVSEHMCKIRIKGRFRNLTIISAYAPTEEATDEDKDT 109
BLAST of mRNA_H-elongata_contig143629.3004.1 vs. uniprot
Match: A0A2P8XIN1_BLAGE (Craniofacial development protein 2 n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8XIN1_BLAGE) HSP 1 Score: 55.8 bits (133), Expect = 1.340e-7 Identity = 35/97 (36.08%), Postives = 49/97 (50.52%), Query Frame = 1
Query: 1 DVVGLQETKQDGASEITASEYRVYFSGNCNGVKGKRGQHGVGLAIKEEIVNEAGKDDIAIEYISARFLKARISIKYNFVTFVVAYAPTEEATGEQKD 291
D+V +QET+ I ++ Y+ G K + GQ G G IK+++V K IA I+ R K RI K+N +T + YAPTEE KD
Sbjct: 30 DIVAVQETRWTDVGMIKKKDFTFYYGGP----KTRTGQAGTGFLIKQKMV----KHVIAFNTINERISKLRIRGKFNNITLINVYAPTEECQDNIKD 118
BLAST of mRNA_H-elongata_contig143629.3004.1 vs. uniprot
Match: A0A2P8YU54_BLAGE (Craniofacial development protein 2 (Fragment) n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8YU54_BLAGE) HSP 1 Score: 54.7 bits (130), Expect = 7.290e-7 Identity = 35/98 (35.71%), Postives = 53/98 (54.08%), Query Frame = 1
Query: 1 DVVGLQETKQDGASEITASEYRVYFSGNCNGVKGKRGQHGVGLAIKEEIVNEAGKDDIA-IEYISARFLKARISIKYNFVTFVVAYAPTEEATGEQKD 291
+++ +QE + G I+ +Y +++SGN K K GQ G G +VN+ KD I+ I+ R K R KYN VT + +YAPTEE + K+
Sbjct: 13 EILTIQEIRWSGEGTISKDKYTLFYSGN----KDKAGQAGTGF-----LVNKKLKDHISGFIPINERLCKLRYRGKYNNVTLINSYAPTEEKNDDDKE 101
BLAST of mRNA_H-elongata_contig143629.3004.1 vs. uniprot
Match: A0A2P8ZA67_BLAGE (Reverse transcriptase domain-containing protein n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8ZA67_BLAGE) HSP 1 Score: 55.5 bits (132), Expect = 9.070e-7 Identity = 34/100 (34.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query: 1 DVVGLQETKQDGASEITASEYRVYFSGNCNGVKGKRGQHGVGLAIKEEIVNEAGKDDIAIEYI--SARFLKARISIKYNFVTFVVAYAPTEEATGEQKDS 294
++V LQE + +G I +Y +Y+SG K G+ G G +K++I N I+++ + R K RI KYN +T + YAPTE+ T E K++
Sbjct: 22 EIVALQEIRWNGDGIINKKDYTLYYSGPSK----KTGKAGTGFFVKKKIHNSI------IDFVPHNDRLCKLRIQSKYNKITLINTYAPTEDKTIEIKET 111
BLAST of mRNA_H-elongata_contig143629.3004.1 vs. uniprot
Match: A0A2P8YNN3_BLAGE (Reverse transcriptase domain-containing protein n=2 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8YNN3_BLAGE) HSP 1 Score: 53.1 bits (126), Expect = 5.870e-6 Identity = 33/90 (36.67%), Postives = 45/90 (50.00%), Query Frame = 1
Query: 1 DVVGLQETKQDGASEITASEYRVYFSGNCNGVKGKRGQHGVGLAIKEEIVNEAGKDDIAIEYISARFLKARISIKYNFVTFVVAYAPTEE 270
DVV +QET+ I ++ Y+ G K + GQ G G I+ +++N I E + R K RI KYN VT + YAPTEE
Sbjct: 30 DVVAVQETRWSNTEIIKKKDFTFYYGGP----KTRTGQAGTGFFIRTKVMNYV----IGFETYNERISKLRIKGKYNNVTLINVYAPTEE 111 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143629.3004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig143629.3004.1 >prot_H-elongata_contig143629.3004.1 ID=prot_H-elongata_contig143629.3004.1|Name=mRNA_H-elongata_contig143629.3004.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp DVVGLQETKQDGASEITASEYRVYFSGNCNGVKGKRGQHGVGLAIKEEIVback to top mRNA from alignment at H-elongata_contig143629:134..430+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig143629.3004.1 ID=mRNA_H-elongata_contig143629.3004.1|Name=mRNA_H-elongata_contig143629.3004.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=297bp|location=Sequence derived from alignment at H-elongata_contig143629:134..430+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig143629:134..430+ >mRNA_H-elongata_contig143629.3004.1 ID=mRNA_H-elongata_contig143629.3004.1|Name=mRNA_H-elongata_contig143629.3004.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig143629:134..430+ (Himanthalia elongata Himel1 dioecious)back to top |