mRNA_H-elongata_contig14361.3002.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14361.3002.1
Unique NamemRNA_H-elongata_contig14361.3002.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14361.3002.1 vs. uniprot
Match: D7FK79_ECTSI (Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK79_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 7.250e-71
Identity = 109/180 (60.56%), Postives = 143/180 (79.44%), Query Frame = 1 
Query:   61 MVARGVQPTSMTLSNVIMAQSWVSPADMYRTLAEMDEKGWVPNRGTHLCLIAAMWQRKDSKGVVDMMRRMLEQDYQPTEATFAMSIMAASRLGNADFAKEIFARRTAAGLEPKEEIYSSMMVAHSKGNLHEECLGYWRQLVCVEGIGGVRINLETYHCAMKSAVTMGHWSEVEAILDMMK 600
            MV++G++P  +TLS++ MAQ+W S  DMYRTLAEMDE+GW P R  HL  IA MWQRKD++GV+ M+ RMLE+ YQPTEA FAM++M+A RLG AD AK +F  R+ +GLEPK+EIYSSMM+AHSK +LHEE L YWRQLVC++G+GGV I+LET   A++SA+   HW EV+ I+ M++
Sbjct:    1 MVSKGLEPDVLTLSHLAMAQAWGSSNDMYRTLAEMDERGWTPTRAAHLSAIAFMWQRKDTEGVLQMIERMLEKSYQPTEAAFAMALMSAGRLGRADLAKVLFEWRSESGLEPKQEIYSSMMLAHSKADLHEESLAYWRQLVCLDGVGGVAIDLETCRSALRSAIVSDHWDEVDTIVGMLR 180
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BLAST of mRNA_H-elongata_contig14361.3002.1 vs. uniprot
Match: A0A6H5KYF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYF7_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 4.380e-39
Identity = 85/184 (46.20%), Postives = 112/184 (60.87%), Query Frame = 1 
Query:   49 VYEEMVARGVQPTSMTLSNVIMAQSWVSPADMYRTLAEMDEKGWVPNRGTHLCLIAAMWQRKDSKGVVDMMRRMLEQDYQPTEATFAMSIMAASRLGNADFAKEIFARRTAAGLEPKEEIYSSMMVAHSKGNLHEECLGYWRQLVCVEGIGGVRINLETYHCAMKSAVTMGHWSEVEAILDMMK 600
            VYEEM++RGV+P   T S++I+A S      MYR + EM  KGW  +R   L +IA M  R+D  GV+  +RRM E+   PTEA F  +  AA  LG  + AK++F  R  AGL P E +Y  MM    K    EECL YWRQLVCV G  GV I+ ETY+ A+K  + +G+  E+EA+L MM+
Sbjct:  214 VYEEMLSRGVEPNQRTASHMIVAHSRGCHDAMYRAVEEMYAKGWQGSRVACLGMIAVMGIRRDYDGVLYTIRRMREESKLPTEAAFVWAYRAAENLGQVETAKQLFQHRAEAGLPPAEYVYVKMMSILMKAGKAEECLEYWRQLVCVHGFNGVVIHPETYNLAIKCTMVVGNQDEMEAVLAMME 397
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BLAST of mRNA_H-elongata_contig14361.3002.1 vs. uniprot
Match: D8LG81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG81_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 2.930e-38
Identity = 83/184 (45.11%), Postives = 113/184 (61.41%), Query Frame = 1 
Query:   49 VYEEMVARGVQPTSMTLSNVIMAQSWVSPADMYRTLAEMDEKGWVPNRGTHLCLIAAMWQRKDSKGVVDMMRRMLEQDYQPTEATFAMSIMAASRLGNADFAKEIFARRTAAGLEPKEEIYSSMMVAHSKGNLHEECLGYWRQLVCVEGIGGVRINLETYHCAMKSAVTMGHWSEVEAILDMMK 600
            V+EEM++RGV+P   T S++I+A S      MYR + EM  KGW  +R   L +IA M  R+D  GV+  +RRM E+   PTEA F  +  AA  LG  + AK++F  R  AGL P E +Y  MM+   K    EECL YWRQLVCV G+ GV I+ ETY+ A+K  + + +  E+EA+L MM+
Sbjct:  214 VHEEMLSRGVEPNQRTASHMIVAHSRGCHDTMYRAVEEMYAKGWQGSRTACLGMIAVMGFRRDYDGVLYTIRRMREESKLPTEAAFVWAYRAAEHLGQVETAKQLFHHRAEAGLPPAEYVYVKMMLILMKAGKAEECLEYWRQLVCVHGLNGVVIHPETYNLAIKCTMVVDNQDEMEAVLAMME 397
[Close]
BLAST of mRNA_H-elongata_contig14361.3002.1 vs. uniprot
Match: D7FK81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK81_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 3.000e-24
Identity = 53/139 (38.13%), Postives = 91/139 (65.47%), Query Frame = 1 
Query:  184 PNRGTHLCLIAAMWQRKDSKGVVDMMRRMLEQDYQPTEATFAMSIMAASRLGNADFAKEIFARRTAAGLEPKEEIYSSMMVAHSKGNLHEECLGYWRQLVCVEGIGGVRINLETYHCAMKSAVTMGHWSEVEAILDMMK 600
            P +  +  +I+ +   +D +G++  +  MLE++  PTEA FA+  M A +LG+ +FAK +  RR+ AG+ P+++ + ++MV   +    E+ L YWR+LVCV+GI G+ I  ET++ A+++AV +  W EVEAI+ MM+
Sbjct:    3 PTKVAYQSMISGLRIGEDWQGILTTINEMLEEEVVPTEAGFAVGFMTARKLGDVEFAKMLLERRSQAGMPPRQDFFVNVMVTLGEAGKPEDFLEYWRRLVCVQGIDGLGIRPETFYLALRTAVKIKAWDEVEAIIGMMQ 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14361.3002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FK79_ECTSI7.250e-7160.56Pentatricopeptide repeat-containing protein, putat... [more]
A0A6H5KYF7_9PHAE4.380e-3946.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG81_ECTSI2.930e-3845.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FK81_ECTSI3.000e-2438.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14361contigH-elongata_contig14361:5053..7470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score236.1
Seed ortholog evalue1.3e-59
Seed eggNOG ortholog2880.D7FK79
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size600
Cds size573
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14361.3002.1prot_H-elongata_contig14361.3002.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14361 5080..7470 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929851.8256457-UTR-H-elongata_contig14361:5052..50791622929851.8256457-UTR-H-elongata_contig14361:5052..5079Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14361 5053..5079 +
1691679183.3296454-UTR-H-elongata_contig14361:5052..50791691679183.3296454-UTR-H-elongata_contig14361:5052..5079Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14361 5053..5079 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929851.8425593-CDS-H-elongata_contig14361:5079..52011622929851.8425593-CDS-H-elongata_contig14361:5079..5201Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14361 5080..5201 +
1691679183.3416817-CDS-H-elongata_contig14361:5079..52011691679183.3416817-CDS-H-elongata_contig14361:5079..5201Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14361 5080..5201 +
1622929851.8618238-CDS-H-elongata_contig14361:5811..59171622929851.8618238-CDS-H-elongata_contig14361:5811..5917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14361 5812..5917 +
1691679183.3492162-CDS-H-elongata_contig14361:5811..59171691679183.3492162-CDS-H-elongata_contig14361:5811..5917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14361 5812..5917 +
1622929851.8818092-CDS-H-elongata_contig14361:6537..66991622929851.8818092-CDS-H-elongata_contig14361:6537..6699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14361 6538..6699 +
1691679183.3570094-CDS-H-elongata_contig14361:6537..66991691679183.3570094-CDS-H-elongata_contig14361:6537..6699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14361 6538..6699 +
1622929851.8984094-CDS-H-elongata_contig14361:7287..74701622929851.8984094-CDS-H-elongata_contig14361:7287..7470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14361 7288..7470 +
1691679183.3650162-CDS-H-elongata_contig14361:7287..74701691679183.3650162-CDS-H-elongata_contig14361:7287..7470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14361 7288..7470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14361.3002.1

>prot_H-elongata_contig14361.3002.1 ID=prot_H-elongata_contig14361.3002.1|Name=mRNA_H-elongata_contig14361.3002.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp
MAAKANRVYEEMVARGVQPTSMTLSNVIMAQSWVSPADMYRTLAEMDEKG
WVPNRGTHLCLIAAMWQRKDSKGVVDMMRRMLEQDYQPTEATFAMSIMAA
SRLGNADFAKEIFARRTAAGLEPKEEIYSSMMVAHSKGNLHEECLGYWRQ
LVCVEGIGGVRINLETYHCAMKSAVTMGHWSEVEAILDMMK
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mRNA from alignment at H-elongata_contig14361:5053..7470+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14361.3002.1 ID=mRNA_H-elongata_contig14361.3002.1|Name=mRNA_H-elongata_contig14361.3002.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2418bp|location=Sequence derived from alignment at H-elongata_contig14361:5053..7470+ (Himanthalia elongata Himel1 dioecious)
ATCCCGTTTAGGTACGCGCAGGCGCGAATGGCGGCCAAGGCTAATCGTGT
TTATGAAGAGATGGTGGCGAGGGGCGTTCAGCCGACCTCCATGACGCTGT
CGAACGTGATCATGGCACAGTCTTGGGTGTCCCCTGCCGACATGTACAGG
TACAAGGGGGCGCACGGTACACAAACGTTGTAAAAGATCGCTGATCGTGG
AAGAGACGCCTGGCATCCGTGGGTTAGTTTGTACCGTAGATGAAGAGTGC
CCTCTCGAGGGATACTAGCTAATACCGTACAATACCGTACAGTACATAAT
AAAAGACGACGGGTGAAGGTCGGAGCGGTTCGCAAAGTATCTGCCTCGAG
TCTTGACCAATCCAGCAAGAGGGGGGGAGCATAAACGCCTCCGATTCGGG
AAGGGGGTATATTAAAGTTGTTCCCCTCTCGGGGATAAAAATATTACATC
CCCTCCTCTGCGGTTATCATGTATACGACGATTGGATGACGAATTTTAAC
CCTAGGAGTATATTCCCCAAATCGGAGACAGTTATGTTACTTCCCCCCCT
ATCGTTGGATTGGTCTATTAAAGGCCGAGGGACGAAAAGAAAGAAATCGA
AGGAACAGAAACGAAACGTCGTAGCTGACATACTATACTAAAATTGAATA
TGCTAAGTGTGTGGAGGAAGTATGGCCTCACCACCTTGGAGCCCTCCCCC
CCCTCTATCTCTCTCTCTGTATCGTGCGTGCCGCCGACTGCTTGCGATGG
GATGGTAAGGACTTTGGCAGAGATGGACGAGAAGGGGTGGGTACCCAACA
GAGGGACGCATCTGTGCCTTATCGCAGCGATGTGGCAGCGGAAGGACTCC
AAGGGCGTCGTGGATGTGAGAGAGGGGGACCTACCTACCTACCTACCAAG
GTTGATTAAAATCTCAGATTTCCCCTGGTACATATATCCTTGGCCAAATA
CACCGCGAGCGCTTGCCCACACTCATTACACATACATATATACATATACA
CATATACACACACGCCTACCAGGTACATACTACTACACATATATACACGC
AAATTATACTTTTTTGTTCCTTTTTCTACTGTTAATAACGCAATCGTTTT
ATTAGTAATAATAGTAGTAGTATATAATTGGTGATTACTGTACTGTTTCT
GCGACAAAAAGCCGCAGCGTGAAATGGACTAGTGCGTGAGATCTCTGGTT
GCGTCGAATGCTGAAGCATGCTCGCATGGGGGGTTTGCATTTGGTAAGCG
AGGAACGGTTGCTACGGTAAACATTCGTGGCCGCTGACGTTTCATACCGC
GCTATTCATAGTAATAGTAATAGTCGAAAATGACGATTTTTACCGGGCCA
CAGCACTTTGCCCTCATAGTATAGTATAGTATAGTTTGGGAGTTAGGGGT
TACGTTTGGTTGATTATTTGCAAGAAGGGGAGGGCCTTGGAGTATTATCG
TATAATATCGAGTGTTTTATGTTTGCGATCGGCAGATGATGCGCCGAATG
CTTGAGCAGGATTACCAGCCGACGGAGGCCACGTTCGCGATGAGTATCAT
GGCGGCCAGTCGGCTGGGGAACGCAGACTTCGCCAAGGAGATCTTCGCGA
GGCGAACGGCGGCGGGGCTCGAACCCAAGGAGGAAATTTACTCGAGCGTG
AGTGGCAAACCGCTAGACGAATGTCGAAGGCACTCAATGCGTCGTCGTAA
CCTCTTTGGAAATGGAAAAGGAAAGGGGATCGTGCAGAGTAGCGGGAACG
GGAAGCTCGTCGATCGGTGTCGGCGCTAACATGAGGGAAACAACGAGAGC
CGCGTGAGAGGTCTGTTTTTTTGGTCTGTTGCTTTTTCTTGTGCCCTTTG
GATGTTGGACGTCGTCCCGCCCCGTCTCATCCCCTGTCGTGTCGCCCAAG
GAGTTATACCCGCGACTCCAAGCGTTTGGTGGTGGGAGTTATACTCGTGT
TGAAGGGGTAAGGGGTAAGGGGAAGTGTCTTCTGCAGGCAGTAGTGGTAG
CATCTACGACATCTACGATAACTACGATAACGAGAAAATGCAGCGCGGCA
AAAGACAGTTAAACGCCGAACCCAAACGCGCGTGTCGCGTGCACTATGAA
GGAACGCGGCGTCATAATTGGAAATCGTTGTCGGAACGGCGTCGTGTCGG
AACGGCGGGGCTGTCGCAACTGCTAACTGCCGCGAGCGGTGCGCACGATG
CCTCCGGGGGTGTTCCCTTTTTTGTTTCCCCGCAGATGATGGTGGCTCAC
TCGAAGGGCAACCTGCACGAGGAGTGCCTCGGCTACTGGCGGCAGCTGGT
GTGCGTCGAAGGCATCGGAGGCGTAAGGATTAACCTCGAGACGTACCACT
GTGCCATGAAGTCTGCCGTGACGATGGGCCACTGGAGCGAGGTGGAGGCG
ATTCTGGACATGATGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig14361:5053..7470+

>mRNA_H-elongata_contig14361.3002.1 ID=mRNA_H-elongata_contig14361.3002.1|Name=mRNA_H-elongata_contig14361.3002.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at H-elongata_contig14361:5053..7470+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGCCAAGGCTAATCGTGTTTATGAAGAGATGGTGGCGAGGGGCGT
TCAGCCGACCTCCATGACGCTGTCGAACGTGATCATGGCACAGTCTTGGG
TGTCCCCTGCCGACATGTACAGATGGCGGCCAAGGCTAATCGTGTTTATG
AAGAGATGGTGGCGAGGGGCGTTCAGCCGACCTCCATGACGCTGTCGAAC
GTGATCATGGCACAGTCTTGGGTGTCCCCTGCCGACATGTACAGGACTTT
GGCAGAGATGGACGAGAAGGGGTGGGTACCCAACAGAGGGACGCATCTGT
GCCTTATCGCAGCGATGTGGCAGCGGAAGGACTCCAAGGGCGTCGTGGAT
GACTTTGGCAGAGATGGACGAGAAGGGGTGGGTACCCAACAGAGGGACGC
ATCTGTGCCTTATCGCAGCGATGTGGCAGCGGAAGGACTCCAAGGGCGTC
GTGGATATGATGCGCCGAATGCTTGAGCAGGATTACCAGCCGACGGAGGC
CACGTTCGCGATGAGTATCATGGCGGCCAGTCGGCTGGGGAACGCAGACT
TCGCCAAGGAGATCTTCGCGAGGCGAACGGCGGCGGGGCTCGAACCCAAG
GAGGAAATTTACTCGAGCATGATGCGCCGAATGCTTGAGCAGGATTACCA
GCCGACGGAGGCCACGTTCGCGATGAGTATCATGGCGGCCAGTCGGCTGG
GGAACGCAGACTTCGCCAAGGAGATCTTCGCGAGGCGAACGGCGGCGGGG
CTCGAACCCAAGGAGGAAATTTACTCGAGCATGATGGTGGCTCACTCGAA
GGGCAACCTGCACGAGGAGTGCCTCGGCTACTGGCGGCAGCTGGTGTGCG
TCGAAGGCATCGGAGGCGTAAGGATTAACCTCGAGACGTACCACTGTGCC
ATGAAGTCTGCCGTGACGATGGGCCACTGGAGCGAGGTGGAGGCGATTCT
GGACATGATGAAGATGATGGTGGCTCACTCGAAGGGCAACCTGCACGAGG
AGTGCCTCGGCTACTGGCGGCAGCTGGTGTGCGTCGAAGGCATCGGAGGC
GTAAGGATTAACCTCGAGACGTACCACTGTGCCATGAAGTCTGCCGTGAC
GATGGGCCACTGGAGCGAGGTGGAGGCGATTCTGGACATGATGAAG
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