mRNA_H-elongata_contig143598.3001.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig143598.3001.1
Unique NamemRNA_H-elongata_contig143598.3001.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143598.3001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143598contigH-elongata_contig143598:500..1198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size262
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143598.3001.1prot_H-elongata_contig143598.3001.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig143598 500..1197 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929851.727936-CDS-H-elongata_contig143598:499..6441622929851.727936-CDS-H-elongata_contig143598:499..644Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143598 500..644 +
1691679183.3068085-CDS-H-elongata_contig143598:499..6441691679183.3068085-CDS-H-elongata_contig143598:499..644Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143598 500..644 +
1622929851.7430053-CDS-H-elongata_contig143598:1081..11971622929851.7430053-CDS-H-elongata_contig143598:1081..1197Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143598 1082..1197 +
1691679183.3141649-CDS-H-elongata_contig143598:1081..11971691679183.3141649-CDS-H-elongata_contig143598:1081..1197Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143598 1082..1197 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929851.759549-UTR-H-elongata_contig143598:1197..11981622929851.759549-UTR-H-elongata_contig143598:1197..1198Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig143598 1198..1198 +
1691679183.3216884-UTR-H-elongata_contig143598:1197..11981691679183.3216884-UTR-H-elongata_contig143598:1197..1198Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig143598 1198..1198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig143598.3001.1

>prot_H-elongata_contig143598.3001.1 ID=prot_H-elongata_contig143598.3001.1|Name=mRNA_H-elongata_contig143598.3001.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MTSASDANFFRGTASGAASLISLLSPGARDEDTPAVTPAGEKGSSPTGAL
QQAQHGHHPRGHERPRQGKGQRLGLGQISPLTCCLA*
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mRNA from alignment at H-elongata_contig143598:500..1198+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig143598.3001.1 ID=mRNA_H-elongata_contig143598.3001.1|Name=mRNA_H-elongata_contig143598.3001.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=699bp|location=Sequence derived from alignment at H-elongata_contig143598:500..1198+ (Himanthalia elongata Himel1 dioecious)
ATGACTTCGGCGAGCGACGCAAACTTCTTTAGGGGGACAGCGAGTGGAGC
TGCTTCTCTCATCTCCTTGTTGAGTCCCGGGGCGAGGGACGAAGACACCC
CTGCTGTCACACCTGCCGGGGAAAAAGGTTCATCTCCCACCGGCGGTGAG
GGGAAGAAGGGTTGGTGAGAGGGGAGGAAAGGACCCCCTGCCGGGCCCAT
CTCTGCGCTATGACCTCTCGTGCAACTCTCCCCTCCTCCCGTCGGTGGCA
TGCTTTTATATTGAAGATAATATAGTACAGTTCAGTCTGCTGCGCCCGTC
CGTGGTCCATCGTCCGTCGTTACAATCATGAGTGCTTCACGGTCTCCCCT
CCCCCTTGCACCTTATCACATCCCCCTTGCACCTTATTTTATGTACGGCT
TAACCCAATGGCCGCCATTAAAGATATGACCGCCATTAAATATATACAAT
AATTCAAAGTAGAAATAATAAGATAAGCCTTCCTTCCCCCCGCCGCCCTT
GCCAGCTGTCGCTGTCGCTATCGACCAAGGAGATTTTTAATATCTATTTA
TATCTTAATCATGCGTTTATGCGTGTTTTCAGCTTTGCAGCAGGCGCAGC
ATGGTCACCATCCTCGAGGACACGAACGACCTCGACAGGGGAAAGGACAG
AGGCTGGGACTCGGACAGATTTCGCCCCTCACTTGCTGTCTGGCGTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig143598:500..1198+

>mRNA_H-elongata_contig143598.3001.1 ID=mRNA_H-elongata_contig143598.3001.1|Name=mRNA_H-elongata_contig143598.3001.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig143598:500..1198+ (Himanthalia elongata Himel1 dioecious)
ATGACTTCGGCGAGCGACGCAAACTTCTTTAGGGGGACAGCGAGTGGAGC
TGCTTCTCTCATCTCCTTGTTGAGTCCCGGGGCGAGGGACGAAGACACCC
CTGCTGTCACACCTGCCGGGGAAAAAGGTTCATCTCCCACCGGCGATGAC
TTCGGCGAGCGACGCAAACTTCTTTAGGGGGACAGCGAGTGGAGCTGCTT
CTCTCATCTCCTTGTTGAGTCCCGGGGCGAGGGACGAAGACACCCCTGCT
GTCACACCTGCCGGGGAAAAAGGTTCATCTCCCACCGGCGCTTTGCAGCA
GGCGCAGCATGGTCACCATCCTCGAGGACACGAACGACCTCGACAGGGGA
AAGGACAGAGGCTGGGACTCGGACAGATTTCGCCCCTCACTTGCTGTCTG
GCGTGACTTTGCAGCAGGCGCAGCATGGTCACCATCCTCGAGGACACGAA
CGACCTCGACAGGGGAAAGGACAGAGGCTGGGACTCGGACAGATTTCGCC
CCTCACTTGCTGTCTGGCGTGA
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