mRNA_H-elongata_contig14349.2997.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14349.2997.1
Unique NamemRNA_H-elongata_contig14349.2997.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14349.2997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14349contigH-elongata_contig14349:3182..3901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-23_000010.1
Hectar predicted targeting categoryother localisation
Exons2
Model size522
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14349.2997.1prot_H-elongata_contig14349.2997.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14349 3360..3833 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929851.262096-UTR-H-elongata_contig14349:3181..33591622929851.262096-UTR-H-elongata_contig14349:3181..3359Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14349 3182..3359 +
1691679183.1304407-UTR-H-elongata_contig14349:3181..33591691679183.1304407-UTR-H-elongata_contig14349:3181..3359Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14349 3182..3359 +
1622929851.3075042-UTR-H-elongata_contig14349:3833..39011622929851.3075042-UTR-H-elongata_contig14349:3833..3901Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14349 3834..3901 +
1691679183.1570315-UTR-H-elongata_contig14349:3833..39011691679183.1570315-UTR-H-elongata_contig14349:3833..3901Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14349 3834..3901 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929851.2781157-CDS-H-elongata_contig14349:3359..34551622929851.2781157-CDS-H-elongata_contig14349:3359..3455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14349 3360..3455 +
1691679183.1383266-CDS-H-elongata_contig14349:3359..34551691679183.1383266-CDS-H-elongata_contig14349:3359..3455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14349 3360..3455 +
1622929851.2907374-CDS-H-elongata_contig14349:3653..38331622929851.2907374-CDS-H-elongata_contig14349:3653..3833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14349 3654..3833 +
1691679183.1455748-CDS-H-elongata_contig14349:3653..38331691679183.1455748-CDS-H-elongata_contig14349:3653..3833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14349 3654..3833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14349.2997.1

>prot_H-elongata_contig14349.2997.1 ID=prot_H-elongata_contig14349.2997.1|Name=mRNA_H-elongata_contig14349.2997.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
MDHCREIQDWTTACSIISKCDGEDQEEDSPKQPIYPRPDSHTQFVNNCMC
SLFLVSFFFFGYITFSAQFPFHFLLESTLKVFLSELCFSTL*
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mRNA from alignment at H-elongata_contig14349:3182..3901+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14349.2997.1 ID=mRNA_H-elongata_contig14349.2997.1|Name=mRNA_H-elongata_contig14349.2997.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=720bp|location=Sequence derived from alignment at H-elongata_contig14349:3182..3901+ (Himanthalia elongata Himel1 dioecious)
CCCAGCACTTGGAACGCGTGGTGTATGTTTTTGTGGCGACTCAAGCGTTG
CGATGTGGTCCATCCCTGCTTCAACAGTACACTAGAAATAAATACCAACA
ACAATCGCTCACGGATAGCTTTCGGTATCAACGTTGGCGCAAGACCGCGG
AACAAGGGACGGAACGTTTCATAACGAAATGGATCATTGTAGAGAAATTC
AGGACTGGACTACGGCATGCAGTATCATATCCAAATGTGACGGGGAGGAC
CAAGAAGAGGATAGCCCAAAGCAAGTGTGCTCATGCTGGTTTGCTTGTCA
TAAATGATGAGCCACGAGTGGCGCGAACTTATCCCCCGGGCGCTTTTTGC
TCGCCGATGTCATATTGTCTTTCTCTAGCGGTACGTTTTTATCTTGTCTT
GTTTTTGTTTCCTTTTGTTTTATTTATTTTTTATGCTTTCATTGAACCCG
TGGTTCTTCGTGCAATTGTTCTCCGATATACCCGCGTCCCGACAGTCACA
CGCAGTTCGTTAACAACTGTATGTGCTCTCTTTTTTTAGTTTCTTTCTTT
TTCTTTGGATATATCACCTTTTCCGCACAATTCCCGTTTCATTTTTTATT
GGAGAGTACGTTGAAAGTTTTTCTTTCCGAATTGTGTTTTTCTACCTTGT
AACCACGGGGTGGATTTTGACATCAGCTTACGTAAGAATTCGTTCAAAAT
AAAAAGTAGACAATTGTAGC
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Coding sequence (CDS) from alignment at H-elongata_contig14349:3182..3901+

>mRNA_H-elongata_contig14349.2997.1 ID=mRNA_H-elongata_contig14349.2997.1|Name=mRNA_H-elongata_contig14349.2997.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig14349:3182..3901+ (Himanthalia elongata Himel1 dioecious)
ATGGATCATTGTAGAGAAATTCAGGACTGGACTACGGCATGCAGTATCAT
ATCCAAATGTGACGGGGAGGACCAAGAAGAGGATAGCCCAAAGCAAATGG
ATCATTGTAGAGAAATTCAGGACTGGACTACGGCATGCAGTATCATATCC
AAATGTGACGGGGAGGACCAAGAAGAGGATAGCCCAAAGCAACCGATATA
CCCGCGTCCCGACAGTCACACGCAGTTCGTTAACAACTGTATGTGCTCTC
TTTTTTTAGTTTCTTTCTTTTTCTTTGGATATATCACCTTTTCCGCACAA
TTCCCGTTTCATTTTTTATTGGAGAGTACGTTGAAAGTTTTTCTTTCCGA
ATTGTGTTTTTCTACCTTGTAACCGATATACCCGCGTCCCGACAGTCACA
CGCAGTTCGTTAACAACTGTATGTGCTCTCTTTTTTTAGTTTCTTTCTTT
TTCTTTGGATATATCACCTTTTCCGCACAATTCCCGTTTCATTTTTTATT
GGAGAGTACGTTGAAAGTTTTTCTTTCCGAATTGTGTTTTTCTACCTTGT
AA
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