mRNA_H-elongata_contig143461.2996.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig143461.2996.1
Unique NamemRNA_H-elongata_contig143461.2996.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig143461.2996.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 3.460e-27
Identity = 60/137 (43.80%), Postives = 90/137 (65.69%), Query Frame = 2 
Query:   50 RSVSGGAVMLGGGAIIFFSRVQKVTAAA*SESEYVSLAEVVNEPRFLRQVKGFLTRPINDKNVVIREDNEGAIKMATNRFSSRRTRYVDMKHHIVGDAVENSVVRIHYVKSREQRADFLTKALDANIFEVHARFSLN 460
            RSVSGG VM GGG + +FSR QK    + +E+EYVSLA+V+ E  FLRQV+ F+        + + EDN+GAI++A N  S+  ++++D++HH + + V    + I +V+S  Q ADFLTKAL+A  FE H  + ++
Sbjct:  116 RSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDFECHRNYVMS 252
[Close]
BLAST of mRNA_H-elongata_contig143461.2996.1 vs. uniprot
Match: A0A6H5JUW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW6_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 4.480e-27
Identity = 59/137 (43.07%), Postives = 89/137 (64.96%), Query Frame = 2 
Query:   50 RSVSGGAVMLGGGAIIFFSRVQKVTAAA*SESEYVSLAEVVNEPRFLRQVKGFLTRPINDKNVVIREDNEGAIKMATNRFSSRRTRYVDMKHHIVGDAVENSVVRIHYVKSREQRADFLTKALDANIFEVHARFSLN 460
            RSVSGG V  GGGA+ +FSR QK    + +E+EYV+L +VV E  FLRQ+  F+   +    + + EDN+GAI++A N  S+  ++++D++HH + + VE   + + +V S  QRADFLTK+L  + FE H  F +N
Sbjct:   73 RSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFVMN 209
[Close]
BLAST of mRNA_H-elongata_contig143461.2996.1 vs. uniprot
Match: A0A6H5JWJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ4_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 9.400e-27
Identity = 59/137 (43.07%), Postives = 89/137 (64.96%), Query Frame = 2 
Query:   50 RSVSGGAVMLGGGAIIFFSRVQKVTAAA*SESEYVSLAEVVNEPRFLRQVKGFLTRPINDKNVVIREDNEGAIKMATNRFSSRRTRYVDMKHHIVGDAVENSVVRIHYVKSREQRADFLTKALDANIFEVHARFSLN 460
            RSVSGG V  GGGA+ +FSR QK    + +E+EYV+L +VV E  FLRQ+  F+   +    + + EDN+GAI++A N  S+  ++++D++HH + + VE   + + +V S  QRADFLTK+L  + FE H  F +N
Sbjct:  118 RSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFVMN 254
[Close]
BLAST of mRNA_H-elongata_contig143461.2996.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.400e-26
Identity = 59/137 (43.07%), Postives = 88/137 (64.23%), Query Frame = 2 
Query:   50 RSVSGGAVMLGGGAIIFFSRVQKVTAAA*SESEYVSLAEVVNEPRFLRQVKGFLTRPINDKNVVIREDNEGAIKMATNRFSSRRTRYVDMKHHIVGDAVENSVVRIHYVKSREQRADFLTKALDANIFEVHARFSLN 460
            RSVSGG V  GGGA+ +FSR QK    + +E+EYV+L EVV    FLRQ+  F+   +    + + EDN+GAI++A N  S+  ++++D++HH + + VE   + + +V S  QRADFLTK+L  + FE H  F +N
Sbjct:   78 RSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFVMN 214
[Close]
BLAST of mRNA_H-elongata_contig143461.2996.1 vs. uniprot
Match: A0A6H5L8D6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D6_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 2.530e-26
Identity = 62/137 (45.26%), Postives = 89/137 (64.96%), Query Frame = 2 
Query:   50 RSVSGGAVMLGGGAIIFFSRVQKVTAAA*SESEYVSLAEVVNEPRFLRQVKGFLTRPINDKNVVIREDNEGAIKMATNRFSSRRTRYVDMKHHIVGDAVENSVVRIHYVKSREQRADFLTKALDANIFEVHARFSLN 460
            RSVSGG V  GGGA+ +FSR QK    + +E+EYV+L +VV E  FLRQ   F+   +    + I EDN+GAI++A N  S+  +++VD++HH+V + VE   + + +V  R QRADFLTK+L  + FE H  F +N
Sbjct:  291 RSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQFWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHVDVRHHLVRELVERKEISVIHVPRRYQRADFLTKSLPKDAFESHREFVMN 427
[Close]
BLAST of mRNA_H-elongata_contig143461.2996.1 vs. uniprot
Match: A0A6H5K7L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7L4_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 3.980e-26
Identity = 59/137 (43.07%), Postives = 86/137 (62.77%), Query Frame = 2 
Query:   50 RSVSGGAVMLGGGAIIFFSRVQKVTAAA*SESEYVSLAEVVNEPRFLRQVKGFLTRPINDKNVVIREDNEGAIKMATNRFSSRRTRYVDMKHHIVGDAVENSVVRIHYVKSREQRADFLTKALDANIFEVHARFSLN 460
            RSVSGG V  GGGA+ +FSR QK    + +E+EYVSL + V E  FLRQ+  F+   +    + I EDN+GAI++A N  S+  ++++D++HH + + VE   +   +V S  QRADFL K+L  + FE H  F +N
Sbjct:   66 RSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVSLGDAVKEILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKAISAIHVPSPYQRADFLPKSLSEDAFESHRDFVMN 202
[Close]
BLAST of mRNA_H-elongata_contig143461.2996.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.930e-25
Identity = 61/137 (44.53%), Postives = 88/137 (64.23%), Query Frame = 2 
Query:   50 RSVSGGAVMLGGGAIIFFSRVQKVTAAA*SESEYVSLAEVVNEPRFLRQVKGFLTRPINDKNVVIREDNEGAIKMATNRFSSRRTRYVDMKHHIVGDAVENSVVRIHYVKSREQRADFLTKALDANIFEVHARFSLN 460
            RSVSGG VM GGG I +FSR QK    + +E+EYVSLA+V+ E  FLRQV  F+        + + EDN+GAI++A N  S+  ++++D++HH + + V    + I +V+S  Q ADFLTKAL A  FE H  + ++
Sbjct:  300 RSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMS 436
[Close]
BLAST of mRNA_H-elongata_contig143461.2996.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 2.250e-25
Identity = 61/137 (44.53%), Postives = 86/137 (62.77%), Query Frame = 2 
Query:   50 RSVSGGAVMLGGGAIIFFSRVQKVTAAA*SESEYVSLAEVVNEPRFLRQVKGFLTRPINDKNVVIREDNEGAIKMATNRFSSRRTRYVDMKHHIVGDAVENSVVRIHYVKSREQRADFLTKALDANIFEVHARFSLN 460
            RSVSGG VM G G I +FSR Q+    + +E+EYVSLA+V+ E  FLRQV  F+        + + EDN+GAI++A N  S+  +++ D++HH +G+ V    + I YV+S  Q ADFLTKAL    FE H  F ++
Sbjct:  155 RSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHFDVRHHFIGELVGRKEISIFYVESAYQHADFLTKALHFGDFEFHRNFVMS 291
[Close]
BLAST of mRNA_H-elongata_contig143461.2996.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.390e-25
Identity = 59/137 (43.07%), Postives = 89/137 (64.96%), Query Frame = 2 
Query:   50 RSVSGGAVMLGGGAIIFFSRVQKVTAAA*SESEYVSLAEVVNEPRFLRQVKGFLTRPINDKNVVIREDNEGAIKMATNRFSSRRTRYVDMKHHIVGDAVENSVVRIHYVKSREQRADFLTKALDANIFEVHARFSLN 460
            RSVSGG V  GGGA+ +FSR QK    + +E+EYV+L +VV E  FLRQ+  F+   +    + + EDN+GAI++A N  S+  ++++D++HH + + VE   + + +V S  QRADFLTK+L  + FE H  F +N
Sbjct:  324 RSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFVMN 460
[Close]
BLAST of mRNA_H-elongata_contig143461.2996.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 5.860e-25
Identity = 61/137 (44.53%), Postives = 88/137 (64.23%), Query Frame = 2 
Query:   50 RSVSGGAVMLGGGAIIFFSRVQKVTAAA*SESEYVSLAEVVNEPRFLRQVKGFLTRPINDKNVVIREDNEGAIKMATNRFSSRRTRYVDMKHHIVGDAVENSVVRIHYVKSREQRADFLTKALDANIFEVHARFSLN 460
            RSVSGG VM GGG I +FSR QK    + +E+EYVSLA+V+ E  FLRQV  F+        + + EDN+GAI++A N  S+  ++++D++HH + + V    + I +V+S  Q ADFLTKAL A  FE H  + ++
Sbjct:  474 RSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMS 610
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143461.2996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTK6_9PHAE3.460e-2743.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUW6_9PHAE4.480e-2743.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWJ4_9PHAE9.400e-2743.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEZ8_9PHAE1.400e-2643.07Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8D6_9PHAE2.530e-2645.26Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7L4_9PHAE3.980e-2643.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLN0_9PHAE1.930e-2544.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KD60_9PHAE2.250e-2544.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG2_9PHAE3.390e-2543.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE5.860e-2544.53Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143461contigH-elongata_contig143461:240..1126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size887
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143461.2996.1prot_H-elongata_contig143461.2996.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig143461 511..732 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929851.1371074-UTR-H-elongata_contig143461:239..5101622929851.1371074-UTR-H-elongata_contig143461:239..510Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig143461 240..510 +
1691679183.0752046-UTR-H-elongata_contig143461:239..5101691679183.0752046-UTR-H-elongata_contig143461:239..510Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig143461 240..510 +
1622929851.2111511-UTR-H-elongata_contig143461:732..11261622929851.2111511-UTR-H-elongata_contig143461:732..1126Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig143461 733..1126 +
1691679183.122533-UTR-H-elongata_contig143461:732..11261691679183.122533-UTR-H-elongata_contig143461:732..1126Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig143461 733..1126 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929851.1830637-CDS-H-elongata_contig143461:510..7321622929851.1830637-CDS-H-elongata_contig143461:510..732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143461 511..732 +
1691679183.1051714-CDS-H-elongata_contig143461:510..7321691679183.1051714-CDS-H-elongata_contig143461:510..732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143461 511..732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig143461.2996.1

>prot_H-elongata_contig143461.2996.1 ID=prot_H-elongata_contig143461.2996.1|Name=mRNA_H-elongata_contig143461.2996.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MATNRFSSRRTRYVDMKHHIVGDAVENSVVRIHYVKSREQRADFLTKALD
ANIFEVHARFSLNARAGSTMVLG*
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mRNA from alignment at H-elongata_contig143461:240..1126+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig143461.2996.1 ID=mRNA_H-elongata_contig143461.2996.1|Name=mRNA_H-elongata_contig143461.2996.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=887bp|location=Sequence derived from alignment at H-elongata_contig143461:240..1126+ (Himanthalia elongata Himel1 dioecious)
CGTGCGGAGGAACGCCGAGGTCGTGCACAAAACTGTCGGCATGGGTGGAC
GTTCGGTTTCGGGTGGAGCGGTGATGCTGGGGGGGGGCGCGATCATTTTT
TTCTCGAGGGTACAGAAGGTGACCGCGGCCGCCTGATCCGAATCAGAGTA
TGTGTCACTGGCAGAAGTTGTAAATGAGCCCCGTTTCCTTCGACAGGTGA
AAGGCTTCTTGACGCGGCCGATCAACGACAAGAACGTTGTAATCAGGGAA
GATAATGAAGGAGCTATCAAGATGGCGACCAACCGTTTCAGCAGCAGGCG
TACGAGGTACGTGGACATGAAACACCACATCGTCGGCGATGCGGTAGAGA
ATAGTGTAGTTCGAATCCATTACGTGAAGTCAAGGGAGCAACGTGCCGAT
TTTCTGACGAAAGCATTGGACGCCAACATCTTTGAAGTGCATGCGAGATT
TTCGCTAAACGCGCGGGCAGGATCGACGATGGTCTTAGGATGATTTAGCG
TAAGAAGCCAGATGCGTCGATGCGGGAAGGTTTAAATTAAAAACGTCCGA
TGATGACCATTGACGAAAGTTTGAGAGGCACACTTCTGTCATGCAGGAGG
GGGTGTTCGGGAAGCGATAACTTCCGGTGTTTTTCCAGAACGGTGATGCA
CTCGCGTAATTACTTATTAGGGGCGGGTGCGGCGTAATTAGACTAGAGGA
ACCCTGGAAGAGATTAGAAACGGAACAAGGAGTCGGGGTCCCCGGAACCA
GAAAAATTGTATAGGGAGTAAGAAGTAATTTTTCTGGCGAGCAAAAACAA
AAACGTTTTTGCTGTGGATTGTAGCGTCGATGCAGGCAACGGAGCAAGTC
GAGCGAGCCTCACCTCCTCACTTACTGATTTCTCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig143461:240..1126+

>mRNA_H-elongata_contig143461.2996.1 ID=mRNA_H-elongata_contig143461.2996.1|Name=mRNA_H-elongata_contig143461.2996.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig143461:240..1126+ (Himanthalia elongata Himel1 dioecious)
ATGGCGACCAACCGTTTCAGCAGCAGGCGTACGAGGTACGTGGACATGAA
ACACCACATCGTCGGCGATGCGGTAGAGAATAGTGTAGTTCGAATCCATT
ACGTGAAGTCAAGGGAGCAACGTGCCGATTTTCTGACGAAAGCATTGGAC
GCCAACATCTTTGAAGTGCATGCGAGATTTTCGCTAAACGCGCGGGCAGG
ATCGACGATGGTCTTAGGATGAATGGCGACCAACCGTTTCAGCAGCAGGC
GTACGAGGTACGTGGACATGAAACACCACATCGTCGGCGATGCGGTAGAG
AATAGTGTAGTTCGAATCCATTACGTGAAGTCAAGGGAGCAACGTGCCGA
TTTTCTGACGAAAGCATTGGACGCCAACATCTTTGAAGTGCATGCGAGAT
TTTCGCTAAACGCGCGGGCAGGATCGACGATGGTCTTAGGATGA
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