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Homology
BLAST of mRNA_H-elongata_contig14346.2995.1 vs. uniprot
Match: D8LLZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ4_ECTSI) HSP 1 Score: 172 bits (435), Expect = 1.260e-44 Identity = 240/403 (59.55%), Postives = 275/403 (68.24%), Query Frame = 1
Query: 1 GHADVVRLLIEQHGASVDARDGALCTALHAASEGGHPVVVELLLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADPSSRDANGMQAIDMIGVKRQISKEVRSNFLHTLERYILGDFASARAPLSSAKSLRQVQVWRGRDD--------VARVSFAASEAPMGV--------------------------------------RANSSLARGVTAPYDGFSTVAGGGGVKEGKLGGFGGRVGAPRGSGDGRSEGFRAAGELERGKLGVEEVGGRSPRWSVGTAVAGRLEEMRARELGASLRAKVQENEAMKRHLDSVKEEMRMLQRKVLEQS 1071
GH +VV+LL+E+H A+VDARDGALCT LHAASEGGHPVVVELLLR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADPS++DA+G QAIDM+G R+I + +R + ++TLERY +G++A ARAPLSS +SLRQ+ WR RD AR S A G S++R + DGFST + G GG GG + RG+ S + G+ RSPRW+VG AVAGRLE MRARELGASLRAKVQENEAMKR+++SV EEMR LQ+K+ +QS
Sbjct: 2 GHTNVVKLLVEEHRAAVDARDGALCTPLHAASEGGHPVVVELLLRLGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADPSAKDAHGKQAIDMVGAGRRIPQGLRFDIINTLERYQMGEYAIARAPLSSTRSLRQM--WRDRDSGESTPRASTARAGSLPSSAVGGAGQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTIYSSRGGSISRKGSMSLDGFSTASMG-------AGGEGGGPLSVRGAAMRHSSRGFSEGDXXXXXXXXXXXXXRSPRWTVGAAVAGRLEGMRARELGASLRAKVQENEAMKRYVESVTEEMRALQQKISQQS 395
BLAST of mRNA_H-elongata_contig14346.2995.1 vs. uniprot
Match: A0A6H5JD62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD62_9PHAE) HSP 1 Score: 125 bits (314), Expect = 4.710e-28 Identity = 102/242 (42.15%), Postives = 128/242 (52.89%), Query Frame = 1
Query: 439 ADPSSRDANGMQAIDMIGVKRQISKEVRSNFLHTLERYILGDFASARAPLSSAKSLRQVQVWRGRDD---VARVSFA-ASEAPMGVRANS-----------------------------------------SLARGVTAPYDGFSTVA-GGGGVKEGKLGGFGGRVGAPRGSGDGRSEGFRAAGELERGKLGVEEVGGRSPRWSVGTAVAGRLEEMRARELGASLRAKVQENEAMKRHLDSV 1026
ADPS++DA+G QA+DM+G R+I + ++ + ++TLERY +G++ ARAPLSS +SLRQ+ WR RD R S A A P G + S++R + DGFST + G GG G L R A R S G SEG G GGRSPRW+VG AVAGRLE MRARELGASLRAKVQENEAMKR+++SV
Sbjct: 270 ADPSAKDAHGKQAVDMVGAGRRIPQGLKFDIINTLERYQMGEYGIARAPLSSTRSLRQI--WRDRDSGESTPRASTARAGSLPSGAGGEAGQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTIYSSRGGSISRKGSMSLDGFSTASMGAGGEGGGPLSV---RGAAMRHSSRGFSEGD-----------GRGNGGGRSPRWTVGAAVAGRLEGMRARELGASLRAKVQENEAMKRYVESV 495
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 174.5 |
| Seed ortholog evalue | 9.1e-41 |
| Seed eggNOG ortholog | 2880.D8LLZ4 |
| EggNOG free text desc. | response to abiotic stimulus |
| EggNOG OGs | COG0666@1,KOG4177@2759 |
| Ec32 ortholog description | Ankyrin-repeat protein |
| Ec32 ortholog | Ec-14_002230.1 |
| COG Functional cat. | G |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 1083 |
| Cds size | 1083 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929851.0132074-CDS-H-elongata_contig14346:4543..4597 | 1622929851.0132074-CDS-H-elongata_contig14346:4543..4597 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig14346 4544..4597 - |
| 1691679182.9901516-CDS-H-elongata_contig14346:4543..4597 | 1691679182.9901516-CDS-H-elongata_contig14346:4543..4597 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig14346 4544..4597 - |
| 1622929851.0279849-CDS-H-elongata_contig14346:4992..5443 | 1622929851.0279849-CDS-H-elongata_contig14346:4992..5443 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig14346 4993..5443 - |
| 1691679183.0146105-CDS-H-elongata_contig14346:4992..5443 | 1691679183.0146105-CDS-H-elongata_contig14346:4992..5443 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig14346 4993..5443 - |
| 1622929851.0441148-CDS-H-elongata_contig14346:5803..5907 | 1622929851.0441148-CDS-H-elongata_contig14346:5803..5907 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig14346 5804..5907 - |
| 1691679183.0275545-CDS-H-elongata_contig14346:5803..5907 | 1691679183.0275545-CDS-H-elongata_contig14346:5803..5907 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig14346 5804..5907 - |
| 1622929851.0593424-CDS-H-elongata_contig14346:6495..6618 | 1622929851.0593424-CDS-H-elongata_contig14346:6495..6618 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig14346 6496..6618 - |
| 1691679183.0378969-CDS-H-elongata_contig14346:6495..6618 | 1691679183.0378969-CDS-H-elongata_contig14346:6495..6618 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig14346 6496..6618 - |
| 1622929851.0793924-CDS-H-elongata_contig14346:6940..7094 | 1622929851.0793924-CDS-H-elongata_contig14346:6940..7094 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig14346 6941..7094 - |
| 1691679183.0471973-CDS-H-elongata_contig14346:6940..7094 | 1691679183.0471973-CDS-H-elongata_contig14346:6940..7094 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig14346 6941..7094 - |
| 1622929851.0921452-CDS-H-elongata_contig14346:7807..8004 | 1622929851.0921452-CDS-H-elongata_contig14346:7807..8004 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig14346 7808..8004 - |
| 1691679183.064864-CDS-H-elongata_contig14346:7807..8004 | 1691679183.064864-CDS-H-elongata_contig14346:7807..8004 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig14346 7808..8004 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14346.2995.1 >prot_H-elongata_contig14346.2995.1 ID=prot_H-elongata_contig14346.2995.1|Name=mRNA_H-elongata_contig14346.2995.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=361bp
GHADVVRLLIEQHGASVDARDGALCTALHAASEGGHPVVVELLLRFGAEI DARNGKGQTPLHYACGYGQVDAAQQLTLRGASTGARDIQGNTPLHLACSG GEADIVRLLLVNGSPLQAVNHRGRRPLHLACRSGYLDIAIALLENGADPS SRDANGMQAIDMIGVKRQISKEVRSNFLHTLERYILGDFASARAPLSSAK SLRQVQVWRGRDDVARVSFAASEAPMGVRANSSLARGVTAPYDGFSTVAG GGGVKEGKLGGFGGRVGAPRGSGDGRSEGFRAAGELERGKLGVEEVGGRS PRWSVGTAVAGRLEEMRARELGASLRAKVQENEAMKRHLDSVKEEMRMLQ RKVLEQSSARS back to topmRNA from alignment at H-elongata_contig14346:4544..8004- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig14346.2995.1 ID=mRNA_H-elongata_contig14346.2995.1|Name=mRNA_H-elongata_contig14346.2995.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3461bp|location=Sequence derived from alignment at H-elongata_contig14346:4544..8004- (Himanthalia elongata Himel1 dioecious) GGCCACGCGGACGTCGTCAGGCTTTTGATCGAGCAGCACGGCGCTTCGGT
AGACGCCAGAGATGGCGCGCTTTGCACAGCCCTCCATGCCGCCAGCGAGG
GTGGTCATCCCGTCGTGGTCGAGCTCCTGCTCCGCTTCGGTGCCGAAATC
GACGCGCGCAATGGCAAGGGGCAGACACCACTTCACTACGCCTGTGGGTG
AGTCAAGTTTCAGTGTGTGTGTGTTTTAGCTGCCGTTCCTGCTTGTAAGA
TCGACAGCGCATGGAATCGGAACGGGCCCGTCGGTTGATTTGGGGTCTAC
CGGCAAGTACTTGCTATTATGTTATGTACTAATATATATATATTGTATAT
AGTATATAGTATATTTATTATGGTCATCACATATTATAGCAGAGTAAGAT
CAACCGGATTTGATTGCCTTCTGCTCGTGGTCAGCTGAACAGGGGACATA
ATTTCCCCCCTGTCGTCCCCGTTCGCGCCTGAGAACTTGATCTCGCGAGA
CGGGTTCAGCAGTCTCGTCCTGCGTTAGCCTGCTCATTCTCTCAACACAG
GCTGAATCTGGTGCTTCCTCCCGGGATTCTCTCGATCCTCCCGTTCTCCG
CGACGGCGTCCATCTCTACCGTTAACCGCCATTGGGCCAATCGCGACTTC
ATCAAGTCACGCAATTTGCGTACCGATGACATTTATTATCGAGTCCGCCG
GCACTGAGCCTATAGTCCTCAAGGTAGCTTGAGTAACGGGTGCAGCCTAT
TGAGATAACCCCATGGACCAATTGTTGTACACCTCGCTTTTCCCACACCA
CATTACTCTACTGTAGAAGGCAGCTGTAACATGTTAAATATTATACCTGA
TATATCATACTACTGTTGAAGATAGATACAGCTTGTTGTTATTATTGTTG
ACGTTATCAGGTACGGGCAGGTGGATGCGGCGCAACAGCTAACGCTTCGC
GGAGCGTCCACGGGTGCGCGAGACATACAAGGAAATACGCCGCTGCACCT
GGCGTGCAGCGGGGGCGAGGCTGACATCGTACGACTCCTCTTGGTGAATG
GCTCGCCTCTGCAGGTGACGAGAGAAGCACACGCAGACAGACACTAGCGA
GTACATCACGGTGAGAAGCTTTGCGTCTCATTGTTGCCATGACTTGGGAA
GGCAGGCGTTTTGCGGACGAAAGCGTTCGGCGCGCGGTCACACGACGGTT
GAGTTTTCGTAGTGACAACTGTGGTGATCGCACCATGCTTGTTCAGCTAG
GCTGGGTTAAGTCGGCACCAGGATTGACGTCACCATCCACTCAATGCTCT
TTGTAAAGTGACGCGAAGAAGTGATGGATGTCAGCAGCCCCCGTGGACTC
GCTGTGCGGTCGTTATCTGTCGGGCGTATCTACCAGGCGGTCAATCACCG
CGGCAGGCGGCCGCTGCACCTCGCGTGCCGCTCCGGGTACCTCGACATCG
CGATCGCGCTGCTGGAGAATGGGGCCGATCCGTCGTCGAGGGACGCTAAT
GGCATGCAGGTCGGGAAAGGGACAAAATGTCCTGGGTGTGACTGCGCGCG
TATGATTGTAGTACAGTATTGCCGTGCTCTAGTATTATACTAGTCGTAGT
TGTATCAGTAGCAGTTTTATATTGAAGGAAATTACCGCTCGAAGGTAGGG
GGGAGGGGGGAGGGATCCGTCGAGAAGACGATGGTGACGGGATCGAGCAA
TGATCGTCTGGGTGTGGGGGGGGGGGGGGGGGGAGGGGGGGGAGATTGAG
GGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGTGCCGTCGAGAA
GACGATGGTGACGGGATCGAGCAATGATCGTCTGCGTGTATGGTAGTCGC
GTGACCGTATGTGCTTCTATGGGCGTGCAGTACGATAGAAACCCGCCCCC
CAGATTTTCGATCGCTGCACCGCGGAGGAGCCTTTCTGCGCAGAGGACAC
CTCAAGCAATTTATTATACATATATATTTCCCTGATGATTTGGAACGATT
GAAGTAGGGGGGAGGGGGGGGCTCTCTCGTCTCTTAATTTCTCGTTTTTG
CCTCTGCCTTACGCTTGCTGTTCTTAACTTGTTTTAACTCGCGACAGGCG
ATCGACATGATCGGGGTAAAACGGCAAATCTCGAAGGAAGTGCGATCCAA
CTTCTTACACACGCTGGAGAGGTACATACTGGGTGACTTCGCGTCTGCGA
GGTGAGAGAGGTGGTAGGCGTTCCTGACATAGCGGGACGACGCATGGTGT
GGTGCGGTGCACTTCGCGACGATACGATACGGGATGCTGCAATAAGAGAC
CACGAATGGTGGGAGCGGTGGCAAAGCGCAGTCGTTTCGTGTTTTCTTCT
TCTTTCGATTCTTGCTTTTAGCAAATAAAAAAAAGAGCTGGTGACTTGAC
TCGCAATACCCATTCTTGCTTGCTAATGTAATTTTCTGCTTGTCTTTCGC
TTCCCAGAGTGCCGCGATCCCTTGGTGAGTGTGATGGGTGATAACGATCC
CGGCTGGCGTTTTTTTACGGCGCCGCCTTACACCCTACCTCGTCCGCGCG
GCACGTGGCAGGGCACCCCTGAGCTCGGCGAAGTCGCTTCGGCAAGTTCA
GGTGTGGAGGGGCCGCGATGACGTAGCACGGGTAAGCTTCGCCGCTTCGG
AAGCGCCCATGGGTGTACGCGCGAACTCCTCCCTAGCGAGAGGAGTGACG
GCGCCGTATGACGGGTTTTCCACGGTGGCGGGAGGAGGAGGGGTGAAAGA
AGGAAAACTAGGAGGCTTTGGCGGGAGAGTGGGGGCGCCGCGAGGGTCGG
GAGACGGACGGAGCGAGGGCTTCCGCGCGGCGGGGGAGCTGGAAAGGGGC
AAACTGGGGGTGGAAGAGGTGGGAGGGCGCAGCCCGCGATGGTCCGTGGG
GACGGCGGTCGCGGGGAGGCTCGAGGAGATGAGAGCGCGCGAGCTCGGTG
CCAGCCTTCGTGCCAAGGTGCAGGAGAACGAGGCCATGAAGAGGCATCTG
GACTCCGTAAAGGTAGGTGTGTGATGGCGCGGCGTGTTTTTAAGACGGAG
AGGTCAAGAATGCTGGTTGACGTTTACTGGCGCGTGGACCCACGCGATGC
TTTTGGTTGGATTATTCGTAACGTTTCGATATGTCATCTTCGCAAGATAG
GAGGTTTTGGGTTTTCGAGCGCGTTCGGAATGGAAGACGAAAATTAAGAT
GGTTTCGCGAGGGGCGCTTCCGGACTCCACTACACGTTACGAATAGTCAG
TACTCAATTTTTTCACTCTCGGCTCGGACACTTGTTATTTTTATTTGCTC
TTGTGGTATGAGTAGCGTGCCTTGGATACCCCGGCTGCTACACACGACAC
CTGTGTTCCATAGACCTGTCTTCTGAAAAGTCAAGTTACCTCCCCCTTAA
AAAACAGGAAGAAATGCGAATGTTACAGCGGAAAGTTTTGGAGCAGTCAT
CGGCGCGGTCG back to topCoding sequence (CDS) from alignment at H-elongata_contig14346:4544..8004- >mRNA_H-elongata_contig14346.2995.1 ID=mRNA_H-elongata_contig14346.2995.1|Name=mRNA_H-elongata_contig14346.2995.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2166bp|location=Sequence derived from alignment at H-elongata_contig14346:4544..8004- (Himanthalia elongata Himel1 dioecious) GGCCACGCGGACGTCGTCAGGCTTTTGATCGAGCAGCACGGCGCTTCGGT AGACGCCAGAGATGGCGCGCTTTGCACAGCCCTCCATGCCGCCAGCGAGG GTGGTCATCCCGTCGTGGTCGAGCTCCTGCTCCGCTTCGGTGCCGAAATC GACGCGCGCAATGGCAAGGGGCAGACACCACTTCACTACGCCTGTGGGGC CACGCGGACGTCGTCAGGCTTTTGATCGAGCAGCACGGCGCTTCGGTAGA CGCCAGAGATGGCGCGCTTTGCACAGCCCTCCATGCCGCCAGCGAGGGTG GTCATCCCGTCGTGGTCGAGCTCCTGCTCCGCTTCGGTGCCGAAATCGAC GCGCGCAATGGCAAGGGGCAGACACCACTTCACTACGCCTGTGGGTACGG GCAGGTGGATGCGGCGCAACAGCTAACGCTTCGCGGAGCGTCCACGGGTG CGCGAGACATACAAGGAAATACGCCGCTGCACCTGGCGTGCAGCGGGGGC GAGGCTGACATCGTACGACTCCTCTTGGTGAATGGCTCGCCTCTGCAGGT ACGGGCAGGTGGATGCGGCGCAACAGCTAACGCTTCGCGGAGCGTCCACG GGTGCGCGAGACATACAAGGAAATACGCCGCTGCACCTGGCGTGCAGCGG GGGCGAGGCTGACATCGTACGACTCCTCTTGGTGAATGGCTCGCCTCTGC AGGCGGTCAATCACCGCGGCAGGCGGCCGCTGCACCTCGCGTGCCGCTCC GGGTACCTCGACATCGCGATCGCGCTGCTGGAGAATGGGGCCGATCCGTC GTCGAGGGACGCTAATGGCATGCAGGCGGTCAATCACCGCGGCAGGCGGC CGCTGCACCTCGCGTGCCGCTCCGGGTACCTCGACATCGCGATCGCGCTG CTGGAGAATGGGGCCGATCCGTCGTCGAGGGACGCTAATGGCATGCAGGC GATCGACATGATCGGGGTAAAACGGCAAATCTCGAAGGAAGTGCGATCCA ACTTCTTACACACGCTGGAGAGGTACATACTGGGTGACTTCGCGTCTGCG AGGCGATCGACATGATCGGGGTAAAACGGCAAATCTCGAAGGAAGTGCGA TCCAACTTCTTACACACGCTGGAGAGGTACATACTGGGTGACTTCGCGTC TGCGAGGGCACCCCTGAGCTCGGCGAAGTCGCTTCGGCAAGTTCAGGTGT GGAGGGGCCGCGATGACGTAGCACGGGTAAGCTTCGCCGCTTCGGAAGCG CCCATGGGTGTACGCGCGAACTCCTCCCTAGCGAGAGGAGTGACGGCGCC GTATGACGGGTTTTCCACGGTGGCGGGAGGAGGAGGGGTGAAAGAAGGAA AACTAGGAGGCTTTGGCGGGAGAGTGGGGGCGCCGCGAGGGTCGGGAGAC GGACGGAGCGAGGGCTTCCGCGCGGCGGGGGAGCTGGAAAGGGGCAAACT GGGGGTGGAAGAGGTGGGAGGGCGCAGCCCGCGATGGTCCGTGGGGACGG CGGTCGCGGGGAGGCTCGAGGAGATGAGAGCGCGCGAGCTCGGTGCCAGC CTTCGTGCCAAGGTGCAGGAGAACGAGGCCATGAAGAGGCATCTGGACTC CGTAAAGGGCACCCCTGAGCTCGGCGAAGTCGCTTCGGCAAGTTCAGGTG TGGAGGGGCCGCGATGACGTAGCACGGGTAAGCTTCGCCGCTTCGGAAGC GCCCATGGGTGTACGCGCGAACTCCTCCCTAGCGAGAGGAGTGACGGCGC CGTATGACGGGTTTTCCACGGTGGCGGGAGGAGGAGGGGTGAAAGAAGGA AAACTAGGAGGCTTTGGCGGGAGAGTGGGGGCGCCGCGAGGGTCGGGAGA CGGACGGAGCGAGGGCTTCCGCGCGGCGGGGGAGCTGGAAAGGGGCAAAC TGGGGGTGGAAGAGGTGGGAGGGCGCAGCCCGCGATGGTCCGTGGGGACG GCGGTCGCGGGGAGGCTCGAGGAGATGAGAGCGCGCGAGCTCGGTGCCAG CCTTCGTGCCAAGGTGCAGGAGAACGAGGCCATGAAGAGGCATCTGGACT CCGTAAAGGAAGAAATGCGAATGTTACAGCGGAAAGTTTTGGAGCAGTCA TCGGCGCGGTCGGAAGAAATGCGAATGTTACAGCGGAAAGTTTTGGAGCA GTCATCGGCGCGGTCG back to top
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