mRNA_H-elongata_contig14343.2991.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14343.2991.1
Unique NamemRNA_H-elongata_contig14343.2991.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A6H5JSE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSE9_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 9.160e-59
Identity = 159/377 (42.18%), Postives = 195/377 (51.72%), Query Frame = 1 
Query:   10 KPLLDPKVKEVVSQDLATEEIRRVRRKDSDPSRPSLPFLHQARAADGARSAWNEKRAALLPNGEAPPPPRYQENGKDGRSQAATAVETSGGERGAPGTQSEPGAPAAIAPPELGKAREGEGKEG---ERARLSGIDTKPNGVISSKKPVEPPPSSVGELAASALATPTAEAIPGQDPTSPERGIGAGSSDGEATETTGNCRGDGSSSKPKRLEDEEDQGLWRKEETSAKGVSEEGLEKERGRGKRQKGPRCPEHALPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHLWN--PTLAGP 1125
            KPL DPKV EVVSQDLAT+EI+R                 Q    +G   A  E+++ L   G+        E    G S+  TA        G+ G Q  P        P++G +    G+     E  R  G  TKPNGV  +      P  + G +    L   +A  +P    +    G G   S     +T    R    +        E                 EEG  +ER     +   +CP+HALPVAR FFD+++VS  EMR LPEFFTGRSASKT EMY+QSRNYMVRSYQRMLE D +GQA++TGTECRRKLAGD CSILRIHDFLDRFGLINTR  G+RP S+ + PP+ HLWN  P  AGP
Sbjct:  347 KPLEDPKVDEVVSQDLATQEIKR----------------RQQPRPNGGGKAEGEEKSGLGKLGK--------ERTSAGGSEPQTA--------GSKGKQDPP--------PKVGGSGNAAGESSGGDEGVRAEGKSTKPNGVAVAGAASSSPSKAAGAMPPP-LPKSSAVDLPSSTSSLSSSGPGESPSSTSDRKTAVKARSSEGARPGPEARKETXXXXXXXXXXXXXXXXEEGAGEER-----RTISQCPDHALPVARTFFDFEAVSDLEMRMLPEFFTGRSASKTPEMYMQSRNYMVRSYQRMLEVDPDGQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTRAVGQRPASYSIAPPATHLWNQTPRSAGP 677
[Close]
BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: D8LMT8_ECTSI (Internalin protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMT8_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 5.570e-53
Identity = 98/140 (70.00%), Postives = 111/140 (79.29%), Query Frame = 1 
Query:  721 GRGKRQKGPRCPEHALPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHLWN--PTLAGPGHP 1134
            G  KR   P CP+HALPVAR FFD+++VS  EMR LPEFFTGRSASKT EMY+QSRNYMVRSYQRMLE D +GQA++ GTECRRKLAGD CSILRIHDFL RF L+NTRT G+RP S+ + PP+ HLW   P  AGP  P
Sbjct:  424 GEEKRTTSP-CPDHALPVARTFFDFEAVSGLEMRMLPEFFTGRSASKTPEMYMQSRNYMVRSYQRMLEVDPDGQAFLMGTECRRKLAGDACSILRIHDFLHRFRLLNTRTVGKRPASYSLAPPAPHLWKHTPRSAGPAPP 562
[Close]
BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A2G9RJT8_LITCT (SWIRM domain-containing protein (Fragment) n=5 Tax=Ranidae TaxID=8397 RepID=A0A2G9RJT8_LITCT)

HSP 1 Score: 105 bits (263), Expect = 2.310e-23
Identity = 52/112 (46.43%), Postives = 73/112 (65.18%), Query Frame = 1 
Query:  766 LPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHL 1101
            +P   A+FDY+SV A E R LPEFF G++ SKT E+Y+  RN+M+ +Y+       N Q Y+T T CRR LAGDVC+I+R+H FL+++GLIN +      P+    PP+ H 
Sbjct:   33 IPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHF 138
[Close]
BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A7L2UIE3_BALRX (SMRC2 protein (Fragment) n=13 Tax=Neognathae TaxID=8825 RepID=A0A7L2UIE3_BALRX)

HSP 1 Score: 107 bits (268), Expect = 4.640e-23
Identity = 62/158 (39.24%), Postives = 88/158 (55.70%), Query Frame = 1 
Query:  655 GLWRKEETSAKGVSEEGLEKERGRGKRQKGPRCPEH---------ALPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHL 1101
            GLW+ EE +  G           +G++ K P   E           +P   A+FDY+SV A E R LPEFF G++ SKT E+Y+  RN+M+ +Y+       N Q Y+T T CRR LAGDVC+I+R+H FL+++GLIN +      P+    PP+ H 
Sbjct:   82 GLWQDEEENGTG----------SKGEQAKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHF 223
[Close]
BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A6J1WID0_GALME (SWI/SNF complex subunit SMARCC2-like n=1 Tax=Galleria mellonella TaxID=7137 RepID=A0A6J1WID0_GALME)

HSP 1 Score: 101 bits (251), Expect = 2.960e-22
Identity = 48/112 (42.86%), Postives = 71/112 (63.39%), Query Frame = 1 
Query:  766 LPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHL 1101
            +P   A+FDY+S+   E R LPEFF G++ SKT E+Y+  RN+M+ +Y+       N   Y+T T CRR LAGDVC+I+R+H FL+++GL+N +      P+    PP+ H 
Sbjct:   20 VPSYSAWFDYNSIHTIEKRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL------NPTEYLTSTACRRNLAGDVCAIMRVHGFLEQWGLVNYQLEAESRPTAMGPPPTSHF 125
[Close]
BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A4W3GTU1_CALMI (Uncharacterized protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3GTU1_CALMI)

HSP 1 Score: 105 bits (263), Expect = 6.410e-22
Identity = 52/112 (46.43%), Postives = 73/112 (65.18%), Query Frame = 1 
Query:  766 LPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHL 1101
            +P   A+FDY+SV A E R LPEFF G++ SKT E+Y+  RN+M+ +Y+       N Q Y+T T CRR LAGDVC+I+R+H FL+++GLIN +      P+    PP+ H 
Sbjct:   84 IPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHF 189
[Close]
BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A7L2PWU7_9PASS (SMRC2 protein (Fragment) n=1 Tax=Hypocryptadius cinnamomeus TaxID=589841 RepID=A0A7L2PWU7_9PASS)

HSP 1 Score: 106 bits (264), Expect = 6.870e-22
Identity = 64/165 (38.79%), Postives = 94/165 (56.97%), Query Frame = 1 
Query:  634 LEDEEDQGLWRKEETSAKGVSEEGLEKERGRGKRQKGPRCPEH---------ALPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHL 1101
            L+++ED+ +    ET+ K   E G      +G++ K P   E           +P   A+FDY+SV A E R LPEFF G++ SKT E+Y+  RN+M+ +Y+       N Q Y+T T CRR LAGDVC+I+R+H FL+++GLIN +      P+    PP+ H 
Sbjct:  186 LDEQEDESM----ETAGKDEEENGTG---SKGEQAKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHF 337
[Close]
BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A7L3XKW0_9AVES (SMRC2 protein (Fragment) n=1 Tax=Calonectris borealis TaxID=1323832 RepID=A0A7L3XKW0_9AVES)

HSP 1 Score: 107 bits (268), Expect = 7.750e-22
Identity = 62/158 (39.24%), Postives = 88/158 (55.70%), Query Frame = 1 
Query:  655 GLWRKEETSAKGVSEEGLEKERGRGKRQKGPRCPEH---------ALPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHL 1101
            GLW+ EE +  G           +G++ K P   E           +P   A+FDY+SV A E R LPEFF G++ SKT E+Y+  RN+M+ +Y+       N Q Y+T T CRR LAGDVC+I+R+H FL+++GLIN +      P+    PP+ H 
Sbjct:  296 GLWQDEEENGTG----------SKGEQAKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHF 437
[Close]
BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A4W3GVH8_CALMI (SWIRM domain-containing protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3GVH8_CALMI)

HSP 1 Score: 105 bits (263), Expect = 7.870e-22
Identity = 52/112 (46.43%), Postives = 73/112 (65.18%), Query Frame = 1 
Query:  766 LPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHL 1101
            +P   A+FDY+SV A E R LPEFF G++ SKT E+Y+  RN+M+ +Y+       N Q Y+T T CRR LAGDVC+I+R+H FL+++GLIN +      P+    PP+ H 
Sbjct:  186 IPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHF 291
[Close]
BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A091V6D9_NIPNI (SWI/SNF complex subunit SMARCC1 (Fragment) n=1 Tax=Nipponia nippon TaxID=128390 RepID=A0A091V6D9_NIPNI)

HSP 1 Score: 106 bits (264), Expect = 8.100e-22
Identity = 64/165 (38.79%), Postives = 94/165 (56.97%), Query Frame = 1 
Query:  634 LEDEEDQGLWRKEETSAKGVSEEGLEKERGRGKRQKGPRCPEH---------ALPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHL 1101
            L+++ED+ +    ET+ K   E G      +G++ K P   E           +P   A+FDY+SV A E R LPEFF G++ SKT E+Y+  RN+M+ +Y+       N Q Y+T T CRR LAGDVC+I+R+H FL+++GLIN +      P+    PP+ H 
Sbjct:  251 LDEQEDESM----ETAGKDEEENGTG---SKGEQAKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHF 402
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSE9_9PHAE9.160e-5942.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMT8_ECTSI5.570e-5370.00Internalin protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A2G9RJT8_LITCT2.310e-2346.43SWIRM domain-containing protein (Fragment) n=5 Tax... [more]
A0A7L2UIE3_BALRX4.640e-2339.24SMRC2 protein (Fragment) n=13 Tax=Neognathae TaxID... [more]
A0A6J1WID0_GALME2.960e-2242.86SWI/SNF complex subunit SMARCC2-like n=1 Tax=Galle... [more]
A0A4W3GTU1_CALMI6.410e-2246.43Uncharacterized protein n=1 Tax=Callorhinchus mili... [more]
A0A7L2PWU7_9PASS6.870e-2238.79SMRC2 protein (Fragment) n=1 Tax=Hypocryptadius ci... [more]
A0A7L3XKW0_9AVES7.750e-2239.24SMRC2 protein (Fragment) n=1 Tax=Calonectris borea... [more]
A0A4W3GVH8_CALMI7.870e-2246.43SWIRM domain-containing protein n=1 Tax=Callorhinc... [more]
A0A091V6D9_NIPNI8.100e-2238.79SWI/SNF complex subunit SMARCC1 (Fragment) n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14343contigH-elongata_contig14343:403..3997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.8
Seed ortholog evalue1.8e-47
Seed eggNOG ortholog2880.D8LMT8
KEGG koko:K11649
KEGG Pathwayko04714,ko05225,map04714,map05225
GOsGO:0000228,GO:0000429,GO:0000436,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0005975,GO:0005984,GO:0005985,GO:0005987,GO:0006066,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006996,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009056,GO:0009311,GO:0009313,GO:0009605,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010453,GO:0010455,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016052,GO:0016514,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031494,GO:0031496,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0032991,GO:0042221,GO:0042393,GO:0043044,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044107,GO:0044109,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044275,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045595,GO:0045597,GO:0045893,GO:0045935,GO:0045944,GO:0045990,GO:0045991,GO:0046164,GO:0046352,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070603,GO:0070887,GO:0071496,GO:0071704,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1901575,GO:1901615,GO:1901616,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1904949,GO:2000112,GO:2000241,GO:2000243,GO:2001141
EggNOG free text desc.chromatin remodeling
EggNOG OGsCOG5259@1,KOG1279@2759
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons5
Model size1134
Cds size1134
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14343.2991.1prot_H-elongata_contig14343.2991.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14343 403..3997 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929850.5488634-CDS-H-elongata_contig14343:402..4411622929850.5488634-CDS-H-elongata_contig14343:402..441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14343 403..441 +
1691679182.8202136-CDS-H-elongata_contig14343:402..4411691679182.8202136-CDS-H-elongata_contig14343:402..441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14343 403..441 +
1622929850.56708-CDS-H-elongata_contig14343:996..14801622929850.56708-CDS-H-elongata_contig14343:996..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14343 997..1480 +
1691679182.8320146-CDS-H-elongata_contig14343:996..14801691679182.8320146-CDS-H-elongata_contig14343:996..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14343 997..1480 +
1622929850.6088867-CDS-H-elongata_contig14343:1546..18931622929850.6088867-CDS-H-elongata_contig14343:1546..1893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14343 1547..1893 +
1691679182.8406222-CDS-H-elongata_contig14343:1546..18931691679182.8406222-CDS-H-elongata_contig14343:1546..1893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14343 1547..1893 +
1622929850.6325238-CDS-H-elongata_contig14343:3403..35371622929850.6325238-CDS-H-elongata_contig14343:3403..3537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14343 3404..3537 +
1691679182.849882-CDS-H-elongata_contig14343:3403..35371691679182.849882-CDS-H-elongata_contig14343:3403..3537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14343 3404..3537 +
1622929850.6442707-CDS-H-elongata_contig14343:3867..39971622929850.6442707-CDS-H-elongata_contig14343:3867..3997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14343 3868..3997 +
1691679182.860451-CDS-H-elongata_contig14343:3867..39971691679182.860451-CDS-H-elongata_contig14343:3867..3997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14343 3868..3997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14343.2991.1

>prot_H-elongata_contig14343.2991.1 ID=prot_H-elongata_contig14343.2991.1|Name=mRNA_H-elongata_contig14343.2991.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=378bp
DALKPLLDPKVKEVVSQDLATEEIRRVRRKDSDPSRPSLPFLHQARAADG
ARSAWNEKRAALLPNGEAPPPPRYQENGKDGRSQAATAVETSGGERGAPG
TQSEPGAPAAIAPPELGKAREGEGKEGERARLSGIDTKPNGVISSKKPVE
PPPSSVGELAASALATPTAEAIPGQDPTSPERGIGAGSSDGEATETTGNC
RGDGSSSKPKRLEDEEDQGLWRKEETSAKGVSEEGLEKERGRGKRQKGPR
CPEHALPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMV
RSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRT
GGRRPPSFPVLPPSVHLWNPTLAGPGHP
back to top

mRNA from alignment at H-elongata_contig14343:403..3997+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14343.2991.1 ID=mRNA_H-elongata_contig14343.2991.1|Name=mRNA_H-elongata_contig14343.2991.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3595bp|location=Sequence derived from alignment at H-elongata_contig14343:403..3997+ (Himanthalia elongata Himel1 dioecious)
GATGCGCTGAAGCCTCTACTCGATCCGAAAGTCAAGGAGGTAATGTGGAG
AAAAGAAGGGAAGATATATCGATCTTCTTTGAGAAATAAATAAATATATA
TATATGTATATATCAAATCATTCAAACCCTCCGAACATCCACGCCTTCTT
AGCACCGTCAGAGGTTTCTTTCCTGATCGTGGCCCTCTCACGAATTCCGC
GATCCATTGTGTGGATAAGGAATTCTTATGCGGGATGTGTCGCCGTCCTC
CGGTGTCAACACCAAGAGGCGGTGTATGAAGTCGTGCAAAGAAGCGGGAA
TGTTTGCGGCTTGAAGACCAGCGCTCCTTACGTACGGTAGTTGGGGGTCT
TGACCCAGAATGTGTTGTCATTTTTTTTCCCGAGCAGCTTGAAGGGTCCA
GAAAACTCCTCGATTTCACCCCTTGTGTAAAGAAGATGGAGATGTTTGGA
TTGTTTGAGTGAGTTCTTACGTTTTAAAAATAAATCGCTCGGATTCGCTC
ACCCCGTTCAGTCAGCGAGCCCGTTTCGAGCTATCGATCACACACTCTGG
TTCCCTTTGCTGCTATCGATGGCCTCCGCCCCAACACTTTCCAGGTGGTC
TCTCAAGACCTTGCGACCGAAGAGATTCGCCGCGTTCGGCGAAAGGATAG
CGATCCATCACGGCCTTCGTTGCCGTTTCTGCACCAAGCCCGAGCTGCAG
ATGGAGCACGTTCGGCGTGGAACGAAAAGCGTGCAGCACTACTGCCGAAT
GGCGAGGCCCCGCCACCACCACGATATCAAGAAAACGGGAAGGATGGCCG
CTCGCAGGCAGCAACAGCGGTGGAAACCAGTGGGGGTGAGCGAGGGGCAC
CGGGCACCCAGAGTGAGCCGGGCGCTCCGGCTGCCATAGCCCCTCCCGAG
CTTGGAAAGGCTAGGGAAGGGGAGGGTAAGGAGGGAGAGCGAGCAAGGCT
CTCCGGCATCGACACGAAGCCAAACGGGGTAATCTCGTCGAAGAAACCCG
TGGAGCCTCCGCCGTCGTCAGTGGGAGAACTCGCAGCGTCGGCACTTGCT
ACACCCACGGCTGAAGCCATCCCTGGCCGTTTCTCGGGCGGCTGGTGCAA
TTCGGCCTGGATGTCGCGGCCTTTCCCCGAAAAGCTTGCACAAGAAGACC
CGACGTCGCCCGAGCGCGGGATCGGTGCCGGGAGCAGTGATGGCGAGGCA
ACAGAGACTACGGGTAACTGCCGCGGTGACGGCAGCAGCTCGAAGCCGAA
GCGACTAGAAGATGAGGAGGACCAGGGACTCTGGCGAAAGGAGGAAACCT
CAGCGAAGGGGGTCAGCGAGGAGGGTTTGGAGAAAGAGAGGGGAAGGGGA
AAGCGTCAGAAAGGTCCCCGGTGTCCAGAGCACGCGCTGCCGGTGGCGCG
AGCTTTCTTTGACTACGATTCTGTGAGCGCCTTCGAGATGAGGACGCTGC
CCGAGTTTTTCACCGGCCGTAGCGCTTCAAAGACGGCGGAGGTGAGTCAG
CGTTCGTAACAAGCCCGTGCGGCGAGCGGCATCTTTGAATGGGACTGACG
TCATTCTGATGAATGCTCTGGTCTGGTAGGCGTTGACGATGACAATCCCG
TTTGTTGCCCAACCGGAATGGTGTTTCATTTCTGTTAAAAGCCTGGGAAA
TGATGCATAGTAAATATTCCGTTTTCATTAATAAATGGATATATATATAT
ATATATATATATATTAGATATCGGGCAATTTTCATTCTTAGTATAGAGAA
GAAAATACCCAAAATAACTTACATAAAAATAAAGAAAGTAAAAATATTGT
ATTAAGCATCATTTTTGCTTAGGGTCGGTTTATACGGACTCTTAAAAAAT
CAATATTTTTGAATTTCTTGATTCAAAATATTGAATCGAACCATTTTTTT
AGGTTCAGTTTATACTCGTTTTTGTCTGGAATATTGACAAAACTCGTCCC
CGTACGGCATGTTGACAAAAGCCTCAATTTGTGCTATAAACCAGTAGCAC
CACACGGTACGAATTTCAAACCATGTTCTCTCACATGAGTGCTCGTAGGT
CGACCTTCAAGGTGGAAGTGGCAGCTATTATATTTATGTGTGATGGTGCT
ATTCGGGCTGCGGTACCAATTTCAAACTATATTTTCTCGCGTGAGTGCTC
GTAGCTCGACTGCTACAAGCATGGAAAGTTATTTTAGGGCCCGCTCTGCG
TCTCCAGGCAGCATAGTTTATGCATCGTTTTCTCGAGCTTATCTTATCAC
GAGAAAGGCAGCATGGAATGCCCCAACTACAACCGCTGCCATAACTCCCA
GAGTAAGAAAGCGACGCGATAAGATGATGTTCCCTCTTAACAAAAGGTTG
GAACGTGAGCCCATATGTCGTGGTTGGGTGCACCAACCGCTGGAGTGGTG
GGTCTGTACGGTATCGGTAAACACGCATTTGGGATCTGCAAAATCTGCAA
AAATGCACAGTTCTCTCCCGGGTCACGCGCACCTCCAGCACGCTTGTTCA
CCCCTGACATTGTCTGCTGACATTGGCTACTTGAGTTCATCCCTGACATT
GACTACTTGATTTACGTACGAAGCCCCACGGTGTTAGGTATGTGCTTCGG
TGTTCCCATGAGAAGGCGTGCCGCCTTCATATTCAATATGTTTGACATTC
AAAAATATTGAATATGAAGGAGCGTGAAAAATGAAACGCTCCTTCACATT
CTTTTTTTGGCATGAAAAACAATTTTATTGACGTCAATTAAAAAAAATGA
ATTTATTTTGTTCGTATAAACCGACCCTTACATGACAGATACCCTTTTTT
TTTAATTTTCTAAATGAAAATGAGAGAGTGTGTCGCGAATCTATTAGGAA
TATAATTCACGTGTGTGAAATAAAGGCGACCAGGATCAATCCATTACTGA
TACAAGAAGTTGACGAAGTCCCATATTGGCCATTATCCGTCCATTGTTTT
GTATCTCTCTTTCTCTGGTACACGGCACATTTTGCCCATTCACCTCACCA
GATGTACATTCAGTCGCGTAACTACATGGTGCGGTCTTACCAACGCATGC
TGGAGACGGACAGAAATGGACAGGCCTATATGACGGGGACGGAGTGCCGT
CGGAAGCTCGCTGGTGACGTCTGCTCTATTCTACGGTGCGAACGCCTCCC
TATTTTATTTGGTCGTGTACCCCCCACCCCCCACCGATACCTCGAGACGT
CACCGCTAACTACGCTGTATTCTTGAGTGGCGAATGAAATTGATTAGGAA
GCGGAGAGGAAGGGAATAAAGCTCGATTCGTATTGCTGTCGGACACCCCA
CGGAGGTTGAGGTATTTTCTCGAAAGATGCCCACGTATGAGACGCAACGC
GACACGGCAGAACCTCTCGTAAGTGTCTTTACTATGCTGTGTGCAGGTTG
CACTCCGCAGCCCTTGCTAGCGGTCTTACTCCTTCAAAACCCGGATCCCA
ATAATCCCTTTTCAGGATACACGACTTTCTAGATCGCTTCGGTCTCATCA
ACACGCGGACGGGCGGGAGGCGTCCCCCGTCTTTCCCCGTCCTACCGCCG
TCGGTGCACTTGTGGAATCCGACGCTCGCCGGGCCGGGGCATCCT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig14343:403..3997+

>mRNA_H-elongata_contig14343.2991.1 ID=mRNA_H-elongata_contig14343.2991.1|Name=mRNA_H-elongata_contig14343.2991.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2268bp|location=Sequence derived from alignment at H-elongata_contig14343:403..3997+ (Himanthalia elongata Himel1 dioecious)
GATGCGCTGAAGCCTCTACTCGATCCGAAAGTCAAGGAGGATGCGCTGAA
GCCTCTACTCGATCCGAAAGTCAAGGAGGTGGTCTCTCAAGACCTTGCGA
CCGAAGAGATTCGCCGCGTTCGGCGAAAGGATAGCGATCCATCACGGCCT
TCGTTGCCGTTTCTGCACCAAGCCCGAGCTGCAGATGGAGCACGTTCGGC
GTGGAACGAAAAGCGTGCAGCACTACTGCCGAATGGCGAGGCCCCGCCAC
CACCACGATATCAAGAAAACGGGAAGGATGGCCGCTCGCAGGCAGCAACA
GCGGTGGAAACCAGTGGGGGTGAGCGAGGGGCACCGGGCACCCAGAGTGA
GCCGGGCGCTCCGGCTGCCATAGCCCCTCCCGAGCTTGGAAAGGCTAGGG
AAGGGGAGGGTAAGGAGGGAGAGCGAGCAAGGCTCTCCGGCATCGACACG
AAGCCAAACGGGGTAATCTCGTCGAAGAAACCCGTGGAGCCTCCGCCGTC
GTCAGTGGGAGAACTCGCAGCGTCGGCACTTGCTACACCCACGGCTGAAG
CCATCCCTGGCCGTGGTCTCTCAAGACCTTGCGACCGAAGAGATTCGCCG
CGTTCGGCGAAAGGATAGCGATCCATCACGGCCTTCGTTGCCGTTTCTGC
ACCAAGCCCGAGCTGCAGATGGAGCACGTTCGGCGTGGAACGAAAAGCGT
GCAGCACTACTGCCGAATGGCGAGGCCCCGCCACCACCACGATATCAAGA
AAACGGGAAGGATGGCCGCTCGCAGGCAGCAACAGCGGTGGAAACCAGTG
GGGGTGAGCGAGGGGCACCGGGCACCCAGAGTGAGCCGGGCGCTCCGGCT
GCCATAGCCCCTCCCGAGCTTGGAAAGGCTAGGGAAGGGGAGGGTAAGGA
GGGAGAGCGAGCAAGGCTCTCCGGCATCGACACGAAGCCAAACGGGGTAA
TCTCGTCGAAGAAACCCGTGGAGCCTCCGCCGTCGTCAGTGGGAGAACTC
GCAGCGTCGGCACTTGCTACACCCACGGCTGAAGCCATCCCTGGCCAAGA
CCCGACGTCGCCCGAGCGCGGGATCGGTGCCGGGAGCAGTGATGGCGAGG
CAACAGAGACTACGGGTAACTGCCGCGGTGACGGCAGCAGCTCGAAGCCG
AAGCGACTAGAAGATGAGGAGGACCAGGGACTCTGGCGAAAGGAGGAAAC
CTCAGCGAAGGGGGTCAGCGAGGAGGGTTTGGAGAAAGAGAGGGGAAGGG
GAAAGCGTCAGAAAGGTCCCCGGTGTCCAGAGCACGCGCTGCCGGTGGCG
CGAGCTTTCTTTGACTACGATTCTGTGAGCGCCTTCGAGATGAGGACGCT
GCCCGAGTTTTTCACCGGCCGTAGCGCTTCAAAGACGGCGGAGAAGACCC
GACGTCGCCCGAGCGCGGGATCGGTGCCGGGAGCAGTGATGGCGAGGCAA
CAGAGACTACGGGTAACTGCCGCGGTGACGGCAGCAGCTCGAAGCCGAAG
CGACTAGAAGATGAGGAGGACCAGGGACTCTGGCGAAAGGAGGAAACCTC
AGCGAAGGGGGTCAGCGAGGAGGGTTTGGAGAAAGAGAGGGGAAGGGGAA
AGCGTCAGAAAGGTCCCCGGTGTCCAGAGCACGCGCTGCCGGTGGCGCGA
GCTTTCTTTGACTACGATTCTGTGAGCGCCTTCGAGATGAGGACGCTGCC
CGAGTTTTTCACCGGCCGTAGCGCTTCAAAGACGGCGGAGATGTACATTC
AGTCGCGTAACTACATGGTGCGGTCTTACCAACGCATGCTGGAGACGGAC
AGAAATGGACAGGCCTATATGACGGGGACGGAGTGCCGTCGGAAGCTCGC
TGGTGACGTCTGCTCTATTCTACGATGTACATTCAGTCGCGTAACTACAT
GGTGCGGTCTTACCAACGCATGCTGGAGACGGACAGAAATGGACAGGCCT
ATATGACGGGGACGGAGTGCCGTCGGAAGCTCGCTGGTGACGTCTGCTCT
ATTCTACGGATACACGACTTTCTAGATCGCTTCGGTCTCATCAACACGCG
GACGGGCGGGAGGCGTCCCCCGTCTTTCCCCGTCCTACCGCCGTCGGTGC
ACTTGTGGAATCCGACGCTCGCCGGGCCGGGGCATCCTGATACACGACTT
TCTAGATCGCTTCGGTCTCATCAACACGCGGACGGGCGGGAGGCGTCCCC
CGTCTTTCCCCGTCCTACCGCCGTCGGTGCACTTGTGGAATCCGACGCTC
GCCGGGCCGGGGCATCCT
back to top