mRNA_H-elongata_contig143290.2987.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig143290.2987.1
Unique NamemRNA_H-elongata_contig143290.2987.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143290.2987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143290contigH-elongata_contig143290:716..1150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size437
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929850.225878-CDS-H-elongata_contig143290:715..11501622929850.225878-CDS-H-elongata_contig143290:715..1150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143290 716..1150 +
1691679182.6770782-CDS-H-elongata_contig143290:715..11501691679182.6770782-CDS-H-elongata_contig143290:715..1150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143290 716..1150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143290.2987.1prot_H-elongata_contig143290.2987.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig143290 716..1150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig143290.2987.1

>prot_H-elongata_contig143290.2987.1 ID=prot_H-elongata_contig143290.2987.1|Name=mRNA_H-elongata_contig143290.2987.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
GRTRSETRAAADDALQNELGRTRATELGRAQMALAEDCNDVESLMTIALG
PETAQEAMEMLEEEFERSVTYAAIADAMDTPGESESGIDSPVGLHVGHAE
CAPKSWADVKKSKYAEVWRSAMRAELEGHDQTGTFSGQSVPAGVN
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mRNA from alignment at H-elongata_contig143290:716..1150+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig143290.2987.1 ID=mRNA_H-elongata_contig143290.2987.1|Name=mRNA_H-elongata_contig143290.2987.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=435bp|location=Sequence derived from alignment at H-elongata_contig143290:716..1150+ (Himanthalia elongata Himel1 dioecious)
GGGCGCACGCGGAGCGAGACACGTGCTGCTGCGGATGATGCGCTGCAAAA
TGAGTTGGGGCGGACGCGGGCTACCGAGTTGGGCCGGGCGCAGATGGCAC
TCGCCGAGGATTGCAACGACGTGGAGTCGCTGATGACGATCGCATTGGGG
CCGGAGACAGCACAGGAGGCCATGGAGATGCTCGAGGAGGAGTTCGAGCG
CTCCGTCACGTACGCCGCCATCGCGGACGCCATGGACACCCCAGGGGAGT
CTGAGTCTGGTATTGATTCCCCCGTTGGCTTGCACGTTGGGCACGCCGAG
TGTGCCCCAAAGAGTTGGGCGGACGTGAAAAAGTCCAAGTACGCAGAGGT
TTGGCGTAGTGCGATGCGCGCAGAGTTGGAGGGGCATGATCAGACCGGTA
CGTTTTCCGGTCAAAGTGTCCCAGCAGGTGTAAAT
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Coding sequence (CDS) from alignment at H-elongata_contig143290:716..1150+

>mRNA_H-elongata_contig143290.2987.1 ID=mRNA_H-elongata_contig143290.2987.1|Name=mRNA_H-elongata_contig143290.2987.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig143290:716..1150+ (Himanthalia elongata Himel1 dioecious)
GGGCGCACGCGGAGCGAGACACGTGCTGCTGCGGATGATGCGCTGCAAAA
TGAGTTGGGGCGGACGCGGGCTACCGAGTTGGGCCGGGCGCAGATGGCAC
TCGCCGAGGATTGCAACGACGTGGAGTCGCTGATGACGATCGCATTGGGG
CCGGAGACAGCACAGGAGGCCATGGAGATGCTCGAGGAGGAGTTCGAGCG
CTCCGTCACGTACGCCGCCATCGCGGACGCCATGGACACCCCAGGGGAGT
CTGAGTCTGGTATTGATTCCCCCGTTGGCTTGCACGTTGGGCACGCCGAG
TGTGCCCCAAAGAGTTGGGCGGACGTGAAAAAGTCCAAGTACGCAGAGGT
TTGGCGTAGTGCGATGCGCGCAGAGTTGGAGGGGCATGATCAGACCGGTA
CGTTTTCCGGTCAAAGTGTCCCAGCAGGTGTAAATGGGCGCACGCGGAGC
GAGACACGTGCTGCTGCGGATGATGCGCTGCAAAATGAGTTGGGGCGGAC
GCGGGCTACCGAGTTGGGCCGGGCGCAGATGGCACTCGCCGAGGATTGCA
ACGACGTGGAGTCGCTGATGACGATCGCATTGGGGCCGGAGACAGCACAG
GAGGCCATGGAGATGCTCGAGGAGGAGTTCGAGCGCTCCGTCACGTACGC
CGCCATCGCGGACGCCATGGACACCCCAGGGGAGTCTGAGTCTGGTATTG
ATTCCCCCGTTGGCTTGCACGTTGGGCACGCCGAGTGTGCCCCAAAGAGT
TGGGCGGACGTGAAAAAGTCCAAGTACGCAGAGGTTTGGCGTAGTGCGAT
GCGCGCAGAGTTGGAGGGGCATGATCAGACCGGTACGTTTTCCGGTCAAA
GTGTCCCAGCAGGTGTAAAT
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