mRNA_H-elongata_contig143143.2978.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig143143.2978.1
Unique NamemRNA_H-elongata_contig143143.2978.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig143143.2978.1 vs. uniprot
Match: D8LG95_ECTSI (Peptidase S1 and S6, chymotrypsin/Hap n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG95_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 6.110e-49
Identity = 90/173 (52.02%), Postives = 112/173 (64.74%), Query Frame = 1
Query:   10 LIRQEGGVIVAEVQADLDGHGVSVVSHEEINIYQSTKSLRIAGEGFKDGVK------------------------------------NVGSLPGPLVLLAANVGDGWVPLGPTVAKAGRKVATVYEDPSVLPNDIEIFRTHSHALMIKGTGFNKLTRPIIDFEPQLDSAQVYV 420
            L   +GG+++AEVQADLD HGV+V  HE +++YQS+KS +I+G GF DG K                                    N  +LPG LVLLAA+ GDGWVPLGPT AKAG KVATV+EDPSV  +D+EI+RTH+H L I+GTGFNK+ RP++DFEP LDS  VYV
Sbjct:  200 LNSDDGGIVIAEVQADLDHHGVTVQGHESLDLYQSSKSFQISGSGFVDGTKVRFANALRGGGTNFTITDSQPELLTLELAEGSKWRKNPSALPGALVLLAADSGDGWVPLGPTQAKAGSKVATVFEDPSVEASDVEIYRTHTHELQIRGTGFNKVVRPVLDFEPALDSTSVYV 372          
BLAST of mRNA_H-elongata_contig143143.2978.1 vs. uniprot
Match: A0A6H5JWG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG4_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.100e-37
Identity = 91/235 (38.72%), Postives = 110/235 (46.81%), Query Frame = 1
Query:   22 EGGVIVAEVQADLDGHGVSVVSHEEINIYQSTKSLRIAGEGFKDGVK------------------------------------------------------------------------NVGSLPGPLVLLAANVGDGWVPLGPTVAKAGRKVATVYEDPSVLPNDIEIFRTHSHALMIKGTGF------------------------------NKLTRPIIDFEPQLDSAQVYV 420
            +GGVI+AEVQADLD HGV+V  HE ++IYQSTK+  I+G GF DG K                                                                        N  +LPG LVLLAA+ GDGWVPLGPT AKAG KVATV+EDPSV  +D+EI+RTH+H L I+GTG                               NK+ RP++DFEP LDS+ VYV
Sbjct:   81 DGGVIIAEVQADLDHHGVTVQGHESLDIYQSTKTFHISGSGFVDGTKVRFANALRGGGTNFTITDSQPELLTLELTEGSKWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNPSALPGVLVLLAADSGDGWVPLGPTQAKAGSKVATVFEDPSVEASDVEIYRTHTHELQIRGTGLLKXGXXXXXXXXXXXXXXXXXXXXXXXXXXNKVFRPVLDFEPVLDSSSVYV 315          
BLAST of mRNA_H-elongata_contig143143.2978.1 vs. uniprot
Match: D7FRK3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRK3_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 4.100e-34
Identity = 77/168 (45.83%), Postives = 99/168 (58.93%), Query Frame = 1
Query:    7 LLIRQE-GGVIVAEVQADLDGHGVSVVSHEEINIYQSTKSLRIAGEGFKDGV------------KNVGSL-----------------------PGPLVLLAANVGDGWVPLGPTVAKAGRKVATVYEDPSVLPNDIEIFRTHSHALMIKGTGFNKLTRPIIDFEPQLD 402
            LL+R++ GGV +AE+QADL+ H +SV +HEE+ +YQS+K L IAG+GF  G             KN   +                       P PL+LLAA+ GDG+VPLG T+AK GRKVAT+YEDP + P+  EI RT +H   + GTGF K  RPII FEP  D
Sbjct:  147 LLLREDLGGVTIAEMQADLNRHSLSVETHEEVTMYQSSKVLTIAGQGFNTGNTRFRFGNGLLEGKNFTQIVTPESATFTLEEGSKWRQDAPAWPAPLILLAADAGDGFVPLGATIAKTGRKVATIYEDPRLEPSLQEIGRTLTHDFYLGGTGFTKAFRPIIAFEPLAD 314          
BLAST of mRNA_H-elongata_contig143143.2978.1 vs. uniprot
Match: D7FRJ9_ECTSI (Trypsin domain protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRJ9_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.230e-33
Identity = 78/168 (46.43%), Postives = 102/168 (60.71%), Query Frame = 1
Query:    7 LLIRQE-GGVIVAEVQADLDGHGVSVVSHEEINIYQSTKSLRIAGEGF--------------------------------KDGVK---NVGSLPGPLVLLAANVGDGWVPLGPTVAKAGRKVATVYEDPSVLPNDIEIFRTHSHALMIKGTGFNKLTRPIIDFEPQLD 402
            LL+R++ GGV +AE+QAD+ GH +SV +HEE+ +YQS+K L IAG+GF                                ++G K   +  S P PLVLLAA+ GDG+VPLG T AKAGRKVAT++EDP + P+  EI RT +H L ++GTGF K   PII FEP  D
Sbjct:  147 LLLREDLGGVTIAEMQADMKGHSLSVETHEEVTMYQSSKVLTIAGQGFNSSYTRFRFANSLVEGKNFTQVVTPESATFALEEGSKWRQDAPSWPAPLVLLAADAGDGFVPLGATTAKAGRKVATIFEDPRLEPSLQEIGRTLTHELYLRGTGFTKAFPPIIAFEPLAD 314          
BLAST of mRNA_H-elongata_contig143143.2978.1 vs. uniprot
Match: A0A835YLV2_9STRA (Peptidase S1 and S6, chymotrypsin/Hap n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLV2_9STRA)

HSP 1 Score: 127 bits (318), Expect = 3.320e-31
Identity = 74/158 (46.84%), Postives = 91/158 (57.59%), Query Frame = 1
Query:   28 GVIVAEVQADLDGHGVSVVSHEEINIYQSTKSLRIAGEGFK-DGVK------------------------------------NVGSLPGPLVLLAANVGDGWVPLGPTVAKAGRKVATVYEDPSVLPNDIEIFRTHSHALMIKGTGFNKLTRPIIDFE 390
            G I+AEVQAD +GHGV+V +H E +IYQST +L I G GF  DG +                                    NV +LPG LVLLAA+ G G+V LG T  K+GRKVATVYEDPSV  +++EIFRTH+H L I+G GFN    P+  FE
Sbjct:  210 GRIIAEVQADREGHGVTVETHVEKHIYQSTPTLEIDGVGFNPDGTQLRFANGLRGGGANYTASTVTPTRMTLDLAPGSKWRGNVDNLPGALVLLAADAGAGFVALGATAVKSGRKVATVYEDPSVKASEVEIFRTHTHTLSIQGAGFNDEFSPVFKFE 367          
BLAST of mRNA_H-elongata_contig143143.2978.1 vs. uniprot
Match: A0A7S2SQB8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQB8_9STRA)

HSP 1 Score: 123 bits (308), Expect = 7.330e-30
Identity = 74/167 (44.31%), Postives = 94/167 (56.29%), Query Frame = 1
Query:   25 GGVIVAEVQADLDGHGVSVVSHEEINIYQSTKSLRIAGEGFK---------DGVKNVG----------------------------SLPGPLVLLAANVGDGWVPLGPTVAKAGRKVATVYEDPSVLPNDIEIFRTHSHALMIKGTGFNKLT-RPIIDFEPQLDSAQ 411
            GGV VAEVQADL  HGV+V S  E  IYQS+  L I G+GF          +G++  G                            +LPGPLVLLA + G G+VP+GPT AK GR VATV+EDP+V  N   IF+THSH L IKGTGF + T   ++ F+P L++ +
Sbjct:  214 GGVTVAEVQADLGAHGVTVQSSPEQKIYQSSSELTIRGDGFNSTSNVLRFNNGLRGKGINYTAIEHTSTLMKLNLDGKSKWRANPTNLPGPLVLLAVDAGAGFVPIGPTEAKKGRTVATVFEDPTVTKNLKVIFQTHSHELYIKGTGFTRGTYNTVVTFDPPLENGE 380          
BLAST of mRNA_H-elongata_contig143143.2978.1 vs. uniprot
Match: A0A7S3XT65_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT65_HETAK)

HSP 1 Score: 123 bits (308), Expect = 7.390e-30
Identity = 73/167 (43.71%), Postives = 91/167 (54.49%), Query Frame = 1
Query:   28 GVIVAEVQADLDGHGVSVVSHEEINIYQSTKSLRIAGEGFKD----------------------------------GVK---NVGSLPGPLVLLAANVGDGWVPLGPTVAKAGRKVATVYEDPSVLPNDIEIFRTHSHALMIKGTGFNKLTRPIIDFEPQLDSAQVY 417
            GV VAEVQADLDGHG+ VV+++E  IYQST ++ I G GF                                    GVK   NV  LPGPL +LAA+ G GWV LG T AK GR +ATVYEDP++ P D E+++THSH L + G GF    RP++   P L   + Y
Sbjct:  249 GVRVAEVQADLDGHGIEVVTNKEA-IYQSTPTVMITGSGFNPEGTKLRFYNNLRGSGANYTTIAATPNSLTLQLNPGVKWRENVRQLPGPLTVLAADGGAGWVALGATAAKRGRTIATVYEDPAITPQDTELWQTHSHHLTVTGKGFVMGQRPLLTTTPPLTYGEQY 414          
BLAST of mRNA_H-elongata_contig143143.2978.1 vs. uniprot
Match: A0A7S3XT52_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT52_HETAK)

HSP 1 Score: 123 bits (308), Expect = 7.450e-30
Identity = 73/167 (43.71%), Postives = 91/167 (54.49%), Query Frame = 1
Query:   28 GVIVAEVQADLDGHGVSVVSHEEINIYQSTKSLRIAGEGFKD----------------------------------GVK---NVGSLPGPLVLLAANVGDGWVPLGPTVAKAGRKVATVYEDPSVLPNDIEIFRTHSHALMIKGTGFNKLTRPIIDFEPQLDSAQVY 417
            GV VAEVQADLDGHG+ VV+++E  IYQST ++ I G GF                                    GVK   NV  LPGPL +LAA+ G GWV LG T AK GR +ATVYEDP++ P D E+++THSH L + G GF    RP++   P L   + Y
Sbjct:  249 GVRVAEVQADLDGHGIEVVTNKEA-IYQSTPTVMITGSGFNPEGTKLRFYNNLRGSGANYTTIAATPNSLTLQLNPGVKWRENVRQLPGPLTVLAADGGAGWVALGATAAKRGRTIATVYEDPAITPQDTELWQTHSHHLTVTGKGFVMGQRPLLTTTPPLTYGEQY 414          
BLAST of mRNA_H-elongata_contig143143.2978.1 vs. uniprot
Match: A0A7S2BT53_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BT53_9STRA)

HSP 1 Score: 112 bits (281), Expect = 3.170e-26
Identity = 69/170 (40.59%), Postives = 90/170 (52.94%), Query Frame = 1
Query:   25 GGVIVAEVQADLDGHGVSVVSHEEINIYQSTKSLRIAGEGFKD--------------GVK-----------------------NVGSLPGPLVLLAANVGDGWVPLGPTVAKAGRKVATVYEDPSVLPNDIEIFRTHSHALMIKGTGFNKLTR--PIIDFEPQLDSAQVY 417
            GG++VAEVQADL  HGV+V S  +   YQS  SL I GEGF +              GV                        N  +LPGPLVLLA + G G+VP+GPT AK GR VAT++EDP+V  N   I+RTH+H + + G+GF K  +    I  +P L+  + Y
Sbjct:  214 GGIVVAEVQADLGAHGVTVESTPDEKFYQSQGSLIIIGEGFNETKNTLRFANGLRGKGVNYTTVEHSKTQIKLDLAKKSRWRANPANLPGPLVLLAVDAGAGFVPVGPTEAKKGRTVATIFEDPAVNKNMKTIYRTHTHQIWVTGSGFTKAPQYSTTITMDPPLEVGEDY 383          
BLAST of mRNA_H-elongata_contig143143.2978.1 vs. uniprot
Match: A0A7S2C5N5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C5N5_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.010e-22
Identity = 64/164 (39.02%), Postives = 86/164 (52.44%), Query Frame = 1
Query:   25 GGVIVAEVQADLDGHGVSVVSHEEINIYQSTKSLRIAGEGFK---------DGVKNVG----------------------------SLPGPLVLLAANVGDGWVPLGPTVAKAGRKVATVYEDPSVLPNDIEIFRTHSHALMIKGTGFNKLTR-PIIDFEPQLD 402
            GG+ +AEVQA+L  HGV+V +      YQ+T SL I G GF          +G++  G                            +LPGPLVLLA + G G+VP+GPT AK GR VAT++E PSV  +   +++THSH L I GTGF + T      F P++D
Sbjct:  214 GGITIAEVQANLGAHGVTVETTANERFYQNTGSLVILGNGFNTSHNTLRFANGLRGKGVNYTTVEHTDTQLRLTLASKSKWRANPANLPGPLVLLAVDAGAGFVPVGPTEAKKGRIVATIFETPSVKKSGKTLYKTHSHQLWIVGTGFTRGTYYSKFTFSPEMD 377          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143143.2978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LG95_ECTSI6.110e-4952.02Peptidase S1 and S6, chymotrypsin/Hap n=1 Tax=Ecto... [more]
A0A6H5JWG4_9PHAE1.100e-3738.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRK3_ECTSI4.100e-3445.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRJ9_ECTSI1.230e-3346.43Trypsin domain protein n=2 Tax=Ectocarpus siliculo... [more]
A0A835YLV2_9STRA3.320e-3146.84Peptidase S1 and S6, chymotrypsin/Hap n=1 Tax=Trib... [more]
A0A7S2SQB8_9STRA7.330e-3044.31Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3XT65_HETAK7.390e-3043.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XT52_HETAK7.450e-3043.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2BT53_9STRA3.170e-2640.59Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2C5N5_9STRA1.010e-2239.02Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143143contigH-elongata_contig143143:145..1261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue9.3e-42
Seed eggNOG ortholog2880.D8LG95
EggNOG OGs2D060@1,2SCYI@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size420
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929849.5032365-CDS-H-elongata_contig143143:144..3061622929849.5032365-CDS-H-elongata_contig143143:144..306Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143143 145..306 +
1691679182.4046202-CDS-H-elongata_contig143143:144..3061691679182.4046202-CDS-H-elongata_contig143143:144..306Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143143 145..306 +
1622929849.5247633-CDS-H-elongata_contig143143:1003..12611622929849.5247633-CDS-H-elongata_contig143143:1003..1261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143143 1004..1261 +
1691679182.414036-CDS-H-elongata_contig143143:1003..12611691679182.414036-CDS-H-elongata_contig143143:1003..1261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143143 1004..1261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143143.2978.1prot_H-elongata_contig143143.2978.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig143143 145..1261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig143143.2978.1

>prot_H-elongata_contig143143.2978.1 ID=prot_H-elongata_contig143143.2978.1|Name=mRNA_H-elongata_contig143143.2978.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp
IFLLIRQEGGVIVAEVQADLDGHGVSVVSHEEINIYQSTKSLRIAGEGFK
DGVKNVGSLPGPLVLLAANVGDGWVPLGPTVAKAGRKVATVYEDPSVLPN
DIEIFRTHSHALMIKGTGFNKLTRPIIDFEPQLDSAQVYV
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mRNA from alignment at H-elongata_contig143143:145..1261+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig143143.2978.1 ID=mRNA_H-elongata_contig143143.2978.1|Name=mRNA_H-elongata_contig143143.2978.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1117bp|location=Sequence derived from alignment at H-elongata_contig143143:145..1261+ (Himanthalia elongata Himel1 dioecious)
ATTTTTTTATTGATACGACAGGAAGGAGGCGTCATCGTAGCCGAGGTTCA AGCTGACTTGGACGGGCACGGCGTCTCCGTAGTCTCGCACGAAGAGATCA ACATATACCAGTCTACGAAATCACTTCGTATCGCAGGCGAAGGCTTTAAG GACGGTGTCAAGGTGACTAACTAATAGTAATAATAGTAGTTAAACATTCG TATTCCTATAATCGGAATAATTGCTACTGTACTGCTGCTGTGATTTTTAT CCGATATTGAAACCTCAATAGATGTCGTAGATCTCGTTATGGATGCTCTG AGAACGCTCGAAAAGGACTAAATAATATTTACTATATATTTGTTAAATTA AATAGTACTGTACTGTAAATAGTCATGTTGGGGAAAACATCCATCTGACT TAAATCGCTGGAGGTCGTGTAAGCTGTGTACGTGATTGTGATTAATGGTG ATTGTTCTTGGCAGGTGCGATTTGCTAATGCTCTTCGGGGAGGAGGAACC AACTTCACCATCTCCGACACGCAGCCCAATGCCATCAACCTACAACTAAC CGAGACCAGCAAGTGGCGCAGGGTGAGGATATCGTAGCATACCGCCTCCA TATCTCTAGACACTCACTAGTAAGATGCCTACCGACTGCGGGACTGTCAT CTCTCGACTGATCCGCACTAACATCAATATACTGGAGAGATCATTACTCA ATACACTAATCATCAATACCGCACACGCGTTTGTTTATCGGATGTGCTTA GCCGTCCATCTCCCACGGCTATAGCCCCATAGCATTCCCTGGCTGCGATC GATCGTGATATTCAATTCCCTTACCCTGACCATTACCTTCGATCGTTGAT CTCTATCAGAACGTGGGATCCCTCCCGGGCCCTCTAGTATTGCTGGCGGC TAATGTCGGAGACGGATGGGTGCCCCTAGGACCTACCGTTGCGAAGGCCG GCCGAAAGGTAGCTACGGTTTACGAAGACCCTTCCGTTCTCCCCAACGAT ATAGAGATCTTCCGCACTCATAGCCATGCGCTGATGATCAAGGGCACCGG TTTCAACAAGCTAACGCGCCCCATCATTGACTTCGAGCCTCAGCTGGATT CGGCCCAAGTGTACGTG
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Coding sequence (CDS) from alignment at H-elongata_contig143143:145..1261+

>mRNA_H-elongata_contig143143.2978.1 ID=mRNA_H-elongata_contig143143.2978.1|Name=mRNA_H-elongata_contig143143.2978.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig143143:145..1261+ (Himanthalia elongata Himel1 dioecious)
ATTTTTTTATTGATACGACAGGAAGGAGGCGTCATCGTAGCCGAGGTTCA
AGCTGACTTGGACGGGCACGGCGTCTCCGTAGTCTCGCACGAAGAGATCA
ACATATACCAGTCTACGAAATCACTTCGTATCGCAGGCGAAGGCTTTAAG
GACGGTGTCAAGATTTTTTTATTGATACGACAGGAAGGAGGCGTCATCGT
AGCCGAGGTTCAAGCTGACTTGGACGGGCACGGCGTCTCCGTAGTCTCGC
ACGAAGAGATCAACATATACCAGTCTACGAAATCACTTCGTATCGCAGGC
GAAGGCTTTAAGGACGGTGTCAAGAACGTGGGATCCCTCCCGGGCCCTCT
AGTATTGCTGGCGGCTAATGTCGGAGACGGATGGGTGCCCCTAGGACCTA
CCGTTGCGAAGGCCGGCCGAAAGGTAGCTACGGTTTACGAAGACCCTTCC
GTTCTCCCCAACGATATAGAGATCTTCCGCACTCATAGCCATGCGCTGAT
GATCAAGGGCACCGGTTTCAACAAGCTAACGCGCCCCATCATTGACTTCG
AGCCTCAGCTGGATTCGGCCCAAGTGTACGTGAACGTGGGATCCCTCCCG
GGCCCTCTAGTATTGCTGGCGGCTAATGTCGGAGACGGATGGGTGCCCCT
AGGACCTACCGTTGCGAAGGCCGGCCGAAAGGTAGCTACGGTTTACGAAG
ACCCTTCCGTTCTCCCCAACGATATAGAGATCTTCCGCACTCATAGCCAT
GCGCTGATGATCAAGGGCACCGGTTTCAACAAGCTAACGCGCCCCATCAT
TGACTTCGAGCCTCAGCTGGATTCGGCCCAAGTGTACGTG
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