mRNA_H-elongata_contig143040.2972.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig143040.2972.1
Unique NamemRNA_H-elongata_contig143040.2972.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig143040.2972.1 vs. uniprot
Match: D7G2Q2_ECTSI (Isocitrate dehydrogenase [NADP] n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2Q2_ECTSI)

HSP 1 Score: 350 bits (899), Expect = 9.360e-118
Identity = 167/184 (90.76%), Postives = 175/184 (95.11%), Query Frame = 1 
Query:   19 LYDGRFKDIFQEIYEDEFQQQFEARGITYTHRLIDDMVAQSLKSAGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLLAPDGKTVESEAAHGTVTRHWREYQKGNKTSTNPVASIFAWTRGLAHRAKLDDNKPLRIFSQNLEKAVIETIEAGHMTKDLAICVHGWNVTQDQYLMTEPFMDEIK 570
            +YDGRFKDIFQEI      +QFEARGITYTHRLIDDMVAQSLKSAGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLLAPDG+TVESEAAHGTVTRHWREYQKGNKTSTNP+ASIFAWTRGL HRAKLDDNKPLR+F+ NLEKAVIET+EAGHMTKDLAICVHGWNVT+DQYLMTE FMDEIK
Sbjct:  259 VYDGRFKDIFQEIXXXXXXEQFEARGITYTHRLIDDMVAQSLKSAGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLLAPDGRTVESEAAHGTVTRHWREYQKGNKTSTNPIASIFAWTRGLQHRAKLDDNKPLRVFTNNLEKAVIETVEAGHMTKDLAICVHGWNVTEDQYLMTEAFMDEIK 442
[Close]
BLAST of mRNA_H-elongata_contig143040.2972.1 vs. uniprot
Match: A0A835YYV7_9STRA (Isocitrate dehydrogenase [NADP] n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYV7_9STRA)

HSP 1 Score: 315 bits (808), Expect = 4.900e-104
Identity = 154/183 (84.15%), Postives = 161/183 (87.98%), Query Frame = 1 
Query:   22 YDGRFKDIFQEIYEDEFQQQFEARGITYTHRLIDDMVAQSLKSAGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLLAPDGKTVESEAAHGTVTRHWREYQKGNKTSTNPVASIFAWTRGLAHRAKLDDNKPLRIFSQNLEKAVIETIEAGHMTKDLAICVHGWNVTQDQYLMTEPFMDEIK 570
            YDGRFKDIF           FE+RGITYTHRLIDDMVAQ+LKSAGGFVWA KNYDGDVQSDIVAQGYGSLGLMTSVL+APDGKTVESEAAHGTVTRHWREYQKG  TSTNPVASIFAWTRGL HRAKLDDNK LR F +N+E+AVIETIEAGHMTKDLAICVHGW VT DQYL T PFMD+IK
Sbjct:  253 YDGRFKDIFXXXXXXXXXXXFESRGITYTHRLIDDMVAQALKSAGGFVWALKNYDGDVQSDIVAQGYGSLGLMTSVLVAPDGKTVESEAAHGTVTRHWREYQKGKPTSTNPVASIFAWTRGLQHRAKLDDNKELRAFCRNMERAVIETIEAGHMTKDLAICVHGWEVTPDQYLNTVPFMDKIK 435
[Close]
BLAST of mRNA_H-elongata_contig143040.2972.1 vs. uniprot
Match: A0A024GKV9_9STRA (Isocitrate dehydrogenase [NADP] n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GKV9_9STRA)

HSP 1 Score: 313 bits (801), Expect = 3.900e-103
Identity = 144/183 (78.69%), Postives = 169/183 (92.35%), Query Frame = 1 
Query:   22 YDGRFKDIFQEIYEDEFQQQFEARGITYTHRLIDDMVAQSLKSAGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLLAPDGKTVESEAAHGTVTRHWREYQKGNKTSTNPVASIFAWTRGLAHRAKLDDNKPLRIFSQNLEKAVIETIEAGHMTKDLAICVHGWNVTQDQYLMTEPFMDEIK 570
            YDGRFKDIF+++Y+DE++ +F+A GI+YTHRLIDDMVAQ+LKS GGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVL+APDGKTVE+EAAHGTVTRHWR+YQKG KTSTNP+ASI+AWTRGLAHR +LD N+ L  F+ +LEKAV++T+EAGHMTKDLAIC+HG NVT DQYL TE FMD++K
Sbjct:  244 YDGRFKDIFEQVYQDEYKAKFDAAGISYTHRLIDDMVAQALKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVAPDGKTVEAEAAHGTVTRHWRQYQKGKKTSTNPIASIYAWTRGLAHRGRLDGNQDLIDFTLDLEKAVVQTVEAGHMTKDLAICIHGSNVTTDQYLYTENFMDKVK 426
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BLAST of mRNA_H-elongata_contig143040.2972.1 vs. uniprot
Match: A0A5D6XSC6_9STRA (Isocitrate dehydrogenase [NADP] n=2 Tax=Pythium TaxID=4797 RepID=A0A5D6XSC6_9STRA)

HSP 1 Score: 309 bits (792), Expect = 3.140e-102
Identity = 144/183 (78.69%), Postives = 166/183 (90.71%), Query Frame = 1 
Query:   22 YDGRFKDIFQEIYEDEFQQQFEARGITYTHRLIDDMVAQSLKSAGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLLAPDGKTVESEAAHGTVTRHWREYQKGNKTSTNPVASIFAWTRGLAHRAKLDDNKPLRIFSQNLEKAVIETIEAGHMTKDLAICVHGWNVTQDQYLMTEPFMDEIK 570
            YDGRFKDIF+E+Y+ EF+ +F+A GI YTHRLIDDMVAQ+LKS GGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVL+APDGKTVE+EAAHGTVTRHWR++QKG KTSTNP+ASI+AWTRGLAHR KLD N+ L  F+ +LE+AVI+T+EAGHMTKDLAIC+HG NVT D YL TE FMD++K
Sbjct:  212 YDGRFKDIFEEVYQSEFKAKFDAAGIAYTHRLIDDMVAQALKSDGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVAPDGKTVEAEAAHGTVTRHWRQFQKGQKTSTNPIASIYAWTRGLAHRGKLDGNQELVDFTLDLERAVIQTVEAGHMTKDLAICIHGSNVTPDHYLYTEDFMDKVK 394
[Close]
BLAST of mRNA_H-elongata_contig143040.2972.1 vs. uniprot
Match: H3G9I7_PHYRM (Isocitrate dehydrogenase [NADP] n=21 Tax=Peronosporaceae TaxID=4777 RepID=H3G9I7_PHYRM)

HSP 1 Score: 307 bits (786), Expect = 4.300e-101
Identity = 145/183 (79.23%), Postives = 164/183 (89.62%), Query Frame = 1 
Query:   22 YDGRFKDIFQEIYEDEFQQQFEARGITYTHRLIDDMVAQSLKSAGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLLAPDGKTVESEAAHGTVTRHWREYQKGNKTSTNPVASIFAWTRGLAHRAKLDDNKPLRIFSQNLEKAVIETIEAGHMTKDLAICVHGWNVTQDQYLMTEPFMDEIK 570
            YDGRFKDIF+E+Y+ EF+ +++A GI YTHRLIDDMVAQ+LKS GGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVL+APDGKTVE+EAAHGTVTRHWR+YQ+G KTSTNP+ASI+AWTRGLAHR KLD N+ L  FS  LE AVI+T+EAGHMTKDLAICVHG NVT D YL TE FMD++K
Sbjct:  229 YDGRFKDIFEEVYQKEFKAKYDAAGIAYTHRLIDDMVAQALKSDGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVAPDGKTVEAEAAHGTVTRHWRQYQQGKKTSTNPIASIYAWTRGLAHRGKLDGNQELIDFSLGLEGAVIKTVEAGHMTKDLAICVHGSNVTPDHYLYTEDFMDKVK 411
[Close]
BLAST of mRNA_H-elongata_contig143040.2972.1 vs. uniprot
Match: A0A5J4YAL2_9CHLO (Isocitrate dehydrogenase [NADP] n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YAL2_9CHLO)

HSP 1 Score: 302 bits (773), Expect = 1.210e-98
Identity = 148/184 (80.43%), Postives = 160/184 (86.96%), Query Frame = 1 
Query:   19 LYDGRFKDIFQEIYEDEFQQQFEARGITYTHRLIDDMVAQSLKSAGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLLAPDGKTVESEAAHGTVTRHWREYQKGNKTSTNPVASIFAWTRGLAHRAKLDDNKPLRIFSQNLEKAVIETIEAGHMTKDLAICVHGWN-VTQDQYLMTEPFMDEI 567
            +YDGRF  IFQE+YE+ +Q +FE  GI Y HRLIDDMVAQ+LKS GGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLL PDG+TVE+EAAHGTVTRHWREYQKGN TSTNPVASIFAWTRGLA R KLDDN+ L  F  +LE+ VIETI+AGHMTKDLAICVHG N VT DQYL T PFMDEI
Sbjct:  257 IYDGRFLQIFQELYENSYQDKFEKLGIWYEHRLIDDMVAQALKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLLCPDGRTVEAEAAHGTVTRHWREYQKGNPTSTNPVASIFAWTRGLAQRGKLDDNQELIDFCTSLEEGVIETIQAGHMTKDLAICVHGTNKVTPDQYLTTTPFMDEI 440
[Close]
BLAST of mRNA_H-elongata_contig143040.2972.1 vs. uniprot
Match: A0A1V9ZD99_9STRA (Isocitrate dehydrogenase (NADP(+)) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZD99_9STRA)

HSP 1 Score: 305 bits (780), Expect = 2.720e-98
Identity = 145/184 (78.80%), Postives = 164/184 (89.13%), Query Frame = 1 
Query:   22 YDGRFKDIFQEIYEDEFQQQFEARGITYTHRLIDDMVAQSLKSAGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLLAPDGKTVESEAAHGTVTRHWREYQKGNKTSTNPVASIFAWTRGLAHRAKLDDNKPLRIFSQNLEKAVIETIEAGHMTKDLAICVHGW-NVTQDQYLMTEPFMDEIK 570
            YDGRFKDIF+E+Y++EF+ +++A GI+YTHRLIDDMVAQ+LKS GGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLLAPDGKTVE+EAAHGTVTRHWREYQKG  TSTNP+AS++AWTRGLAHR KLD N  L  F  + E +VI+T+E GHMTKDLAICVHG  NVT DQYL TEPFMDE+K
Sbjct:  234 YDGRFKDIFEEVYQNEFKSKYDAAGISYTHRLIDDMVAQALKSDGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLLAPDGKTVEAEAAHGTVTRHWREYQKGKATSTNPIASMYAWTRGLAHRGKLDGNDELIKFCNDWEASVIQTVENGHMTKDLAICVHGTTNVTPDQYLTTEPFMDEVK 417
[Close]
BLAST of mRNA_H-elongata_contig143040.2972.1 vs. uniprot
Match: A0A2D4BVN0_PYTIN (Isocitrate dehydrogenase (NADP(+)) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVN0_PYTIN)

HSP 1 Score: 312 bits (799), Expect = 2.150e-97
Identity = 146/183 (79.78%), Postives = 167/183 (91.26%), Query Frame = 1 
Query:   22 YDGRFKDIFQEIYEDEFQQQFEARGITYTHRLIDDMVAQSLKSAGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLLAPDGKTVESEAAHGTVTRHWREYQKGNKTSTNPVASIFAWTRGLAHRAKLDDNKPLRIFSQNLEKAVIETIEAGHMTKDLAICVHGWNVTQDQYLMTEPFMDEIK 570
            YDGRFKDIF+E+Y+ E++ +F+A GI+YTHRLIDDMVAQ+LKS GGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVL+APDGKTVE+EAAHGTVTRHWR+YQKG KTSTNP+ASI+AWTRGLAHR KLD N+ L  FS +LEKAVI+T+EAGHMTKDLAIC+HG NVT D YL TE FMD++K
Sbjct:  778 YDGRFKDIFEEVYQTEYKAKFDAAGISYTHRLIDDMVAQALKSDGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVAPDGKTVEAEAAHGTVTRHWRQYQKGQKTSTNPIASIYAWTRGLAHRGKLDGNQELIDFSLDLEKAVIKTVEAGHMTKDLAICIHGSNVTPDHYLFTEDFMDKVK 960
[Close]
BLAST of mRNA_H-elongata_contig143040.2972.1 vs. uniprot
Match: E1Z4A2_CHLVA (Isocitrate dehydrogenase [NADP] n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z4A2_CHLVA)

HSP 1 Score: 298 bits (763), Expect = 6.070e-97
Identity = 145/184 (78.80%), Postives = 159/184 (86.41%), Query Frame = 1 
Query:   22 YDGRFKDIFQEIYEDEFQQQFEARGITYTHRLIDDMVAQSLKSAGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLLAPDGKTVESEAAHGTVTRHWREYQKGNKTSTNPVASIFAWTRGLAHRAKLDDNKPLRIFSQNLEKAVIETIEAGHMTKDLAICVHGWN-VTQDQYLMTEPFMDEIK 570
            YDGRF  IF EIY  ++Q QFE  GI Y HRLIDDMVAQ LKS+GGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVL+ PDG+TVE+EAAHGTVTRHWREYQKGN TSTNP+ASIFAWTRGLAHRAKLD N+ L  F  ++E AVI+T+EAGHMTKDLAICVHG   VT DQY+ TEPFMD+IK
Sbjct:  278 YDGRFMQIFDEIYHTKYQTQFENLGIWYEHRLIDDMVAQGLKSSGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVTPDGRTVEAEAAHGTVTRHWREYQKGNPTSTNPIASIFAWTRGLAHRAKLDGNEELLKFCGDMEAAVIKTVEAGHMTKDLAICVHGTTKVTPDQYMYTEPFMDKIK 461
[Close]
BLAST of mRNA_H-elongata_contig143040.2972.1 vs. uniprot
Match: A0A3F2RHS7_9STRA (Isocitrate dehydrogenase (NADP(+)) n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RHS7_9STRA)

HSP 1 Score: 304 bits (779), Expect = 3.420e-96
Identity = 143/183 (78.14%), Postives = 164/183 (89.62%), Query Frame = 1 
Query:   22 YDGRFKDIFQEIYEDEFQQQFEARGITYTHRLIDDMVAQSLKSAGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLLAPDGKTVESEAAHGTVTRHWREYQKGNKTSTNPVASIFAWTRGLAHRAKLDDNKPLRIFSQNLEKAVIETIEAGHMTKDLAICVHGWNVTQDQYLMTEPFMDEIK 570
            YDGRFKDIF+E+Y+ EF+ +++A GI+YTHRLIDDMVAQ+LKS GGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVL+APDGKTVE+EAAHGTVTRHWR+YQ+G KTSTNP+ASI+AWTRGLAHR  LD N+ L  FS  LE AVI+T+EAGHMTKDLAICVHG NVT + YL TE FMD++K
Sbjct:  234 YDGRFKDIFEEVYQAEFKAKYDAAGISYTHRLIDDMVAQALKSDGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVAPDGKTVEAEAAHGTVTRHWRQYQQGKKTSTNPIASIYAWTRGLAHRGSLDGNQELIDFSLGLENAVIKTVEAGHMTKDLAICVHGSNVTPEHYLYTEDFMDKVK 416
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143040.2972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2Q2_ECTSI9.360e-11890.76Isocitrate dehydrogenase [NADP] n=2 Tax=Ectocarpus... [more]
A0A835YYV7_9STRA4.900e-10484.15Isocitrate dehydrogenase [NADP] n=1 Tax=Tribonema ... [more]
A0A024GKV9_9STRA3.900e-10378.69Isocitrate dehydrogenase [NADP] n=2 Tax=Albugo can... [more]
A0A5D6XSC6_9STRA3.140e-10278.69Isocitrate dehydrogenase [NADP] n=2 Tax=Pythium Ta... [more]
H3G9I7_PHYRM4.300e-10179.23Isocitrate dehydrogenase [NADP] n=21 Tax=Peronospo... [more]
A0A5J4YAL2_9CHLO1.210e-9880.43Isocitrate dehydrogenase [NADP] n=1 Tax=Trebouxia ... [more]
A0A1V9ZD99_9STRA2.720e-9878.80Isocitrate dehydrogenase (NADP(+)) n=1 Tax=Thraust... [more]
A0A2D4BVN0_PYTIN2.150e-9779.78Isocitrate dehydrogenase (NADP(+)) n=1 Tax=Pythium... [more]
E1Z4A2_CHLVA6.070e-9778.80Isocitrate dehydrogenase [NADP] n=1 Tax=Chlorella ... [more]
A0A3F2RHS7_9STRA3.420e-9678.14Isocitrate dehydrogenase (NADP(+)) n=3 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143040contigH-elongata_contig143040:5..1531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score353.2
Seed ortholog evalue7.9e-95
Seed eggNOG ortholog2880.D7G2Q2
Preferred nameIDP1
KEGG rclassRC00001,RC00084,RC00114,RC00626,RC02801
KEGG koko:K00031
KEGG ReactionR00267,R00268,R01899
KEGG Pathwayko00020,ko00480,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko04146,map00020,map00480,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map04146
KEGG ModuleM00009,M00010,M00173,M00740
GOsGO:0003674,GO:0003824,GO:0004448,GO:0004450,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005777,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006102,GO:0006139,GO:0006520,GO:0006536,GO:0006537,GO:0006629,GO:0006631,GO:0006635,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006740,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009060,GO:0009062,GO:0009064,GO:0009084,GO:0009117,GO:0009295,GO:0009987,GO:0015980,GO:0016042,GO:0016053,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0016999,GO:0017144,GO:0019362,GO:0019395,GO:0019637,GO:0019752,GO:0030258,GO:0031974,GO:0032787,GO:0034440,GO:0034641,GO:0042579,GO:0042645,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046394,GO:0046395,GO:0046483,GO:0046496,GO:0051186,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0072329,GO:0072350,GO:0072524,GO:1901360,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.isocitrate dehydrogenase (NADP ) activity
EggNOG OGsCOG0538@1,KOG1526@2759
EC1.1.1.42
COG Functional cat.C
BiGG ReactioniMM904.YLR174W,iND750.YLR174W
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size597
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143040.2972.1prot_H-elongata_contig143040.2972.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig143040 5..1531 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929848.7069225-CDS-H-elongata_contig143040:4..1751622929848.7069225-CDS-H-elongata_contig143040:4..175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143040 5..175 -
1691679182.0934167-CDS-H-elongata_contig143040:4..1751691679182.0934167-CDS-H-elongata_contig143040:4..175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143040 5..175 -
1622929848.723639-CDS-H-elongata_contig143040:613..7601622929848.723639-CDS-H-elongata_contig143040:613..760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143040 614..760 -
1691679182.1036322-CDS-H-elongata_contig143040:613..7601691679182.1036322-CDS-H-elongata_contig143040:613..760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143040 614..760 -
1622929848.7625475-CDS-H-elongata_contig143040:948..10731622929848.7625475-CDS-H-elongata_contig143040:948..1073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143040 949..1073 -
1691679182.110965-CDS-H-elongata_contig143040:948..10731691679182.110965-CDS-H-elongata_contig143040:948..1073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143040 949..1073 -
1622929848.7836874-CDS-H-elongata_contig143040:1377..15311622929848.7836874-CDS-H-elongata_contig143040:1377..1531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143040 1378..1531 -
1691679182.1199112-CDS-H-elongata_contig143040:1377..15311691679182.1199112-CDS-H-elongata_contig143040:1377..1531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143040 1378..1531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig143040.2972.1

>prot_H-elongata_contig143040.2972.1 ID=prot_H-elongata_contig143040.2972.1|Name=mRNA_H-elongata_contig143040.2972.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=199bp
MWHNAQLYDGRFKDIFQEIYEDEFQQQFEARGITYTHRLIDDMVAQSLKS
AGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLLAPDGKTVESEAAHGT
VTRHWREYQKGNKTSTNPVASIFAWTRGLAHRAKLDDNKPLRIFSQNLEK
AVIETIEAGHMTKDLAICVHGWNVTQDQYLMTEPFMDEIKVSRVTSHV*
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mRNA from alignment at H-elongata_contig143040:5..1531-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig143040.2972.1 ID=mRNA_H-elongata_contig143040.2972.1|Name=mRNA_H-elongata_contig143040.2972.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1527bp|location=Sequence derived from alignment at H-elongata_contig143040:5..1531- (Himanthalia elongata Himel1 dioecious)
ATGTGGCACAACGCACAGCTCTACGACGGACGCTTCAAGGACATATTCCA
GGAGATCTACGAAGATGAATTCCAGCAGCAGTTTGAGGCACGAGGCATCA
CCTACACGCACCGCCTCATCGACGATATGGTGGCGCAGAGCCTCAAGTCC
GCCGGTGAGAGGATAGATCGAGCAGAACGGTCTTTTAGATAAACAGGCCG
TTGGAGCTCTCATCCGATAACGAAAACGGTTGCAGCTTTCATCCGAGCGA
TTCATCTTCTGCTCTTATTAATAGTCCGATAACGATAACAACAAGCACAT
GGCTCGTGAAAAAAACACCGCCTTTTTTTTAAGTGGGGGGTTGTTGAATG
GATGGAGATGGAGAGGAAATATATGCTCGATTGCGTCTTCCATGGACAAT
ACACACACACGCGGCGCTTGTAGACTTTACTCTTTTTGAAAACAAAACGA
CGAAACAGGTGGGTTCGTTTGGGCGTGCAAGAACTACGACGGGGATGTGC
AGTCCGACATCGTCGCGCAGGGTTACGGGTCGCTCGGCCTCATGACGAGC
GTGCTCTTGGCCCCGGACGGGAAGACGGTGGAGGTGGGTTTACACCAAAG
TTGTATTCCCCCCCTAAGAGGAAAACAGGGGATATTTTGCCAGCATAAGT
ATATGCTGGTACAGCGTTAGAGAGACATAATGACGATCGCATGACGCTTC
GCATCTCGTTTCGCCGGGGTTACACGCGGCTGTCGGCGTTTTGTTCGCGG
GGGGGGGTATATCGCGCGCAGTCCGAGGCAGCGCACGGGACGGTGACGAG
GCACTGGCGCGAGTATCAGAAGGGTAACAAGACATCGACCAACCCTGTTG
CTTCCATCTTTGCGTGGACGCGCGGCCTGGCCCACCGGGCGAAGCTGGAC
GATAACAAGCCTCTCCGGGTGAGAGACAGAAATAGAGAATACTTGTTGCA
AATAGATCGATCGGTGTGTGTAACGTTTCCTAATTGTTGACTACTCCCTC
CGAACCCTTTCCGAGTCTACGCATGCACCTTCCTGGATTAGTGGGATGGT
GATGACGTCATGATGGGGGATGGGTGTGTAGTCGAGCACTCCCTTTCCTT
TCGGTTTGTATGTTTCCTATTGTCGTGGCCACCTTGGCCTTTATGGGGTT
TGTTGATATCTCAACATTTCCGTATTTCGTAAAGTGGTGGGACGAGGTCT
TCCTTTTGCTAAAATGCGTTAATCTGCCGCTTAGGGCTGAAACTGTGAAA
CGTTATGTGTTCTGTAGGGGGATCCAACAGCCCAAGCTGCTCACTGTTGT
CGCCATTACGCACCTTACCGTGTACTGGTATCATTTTGTACAAATTGATC
ACCCAGATTTTCTCGCAGAACCTCGAGAAGGCGGTGATCGAGACAATAGA
AGCGGGACACATGACGAAGGACCTGGCCATCTGTGTTCACGGCTGGAACG
TGACCCAGGACCAATACCTCATGACAGAGCCCTTCATGGACGAGATCAAG
GTCAGTCGCGTGACGTCTCATGTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig143040:5..1531-

>mRNA_H-elongata_contig143040.2972.1 ID=mRNA_H-elongata_contig143040.2972.1|Name=mRNA_H-elongata_contig143040.2972.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1194bp|location=Sequence derived from alignment at H-elongata_contig143040:5..1531- (Himanthalia elongata Himel1 dioecious)
ATGTGGCACAACGCACAGCTCTACGACGGACGCTTCAAGGACATATTCCA
GGAGATCTACGAAGATGAATTCCAGCAGCAGTTTGAGGCACGAGGCATCA
CCTACACGCACCGCCTCATCGACGATATGGTGGCGCAGAGCCTCAAGTCC
GCCGATGTGGCACAACGCACAGCTCTACGACGGACGCTTCAAGGACATAT
TCCAGGAGATCTACGAAGATGAATTCCAGCAGCAGTTTGAGGCACGAGGC
ATCACCTACACGCACCGCCTCATCGACGATATGGTGGCGCAGAGCCTCAA
GTCCGCCGGTGGGTTCGTTTGGGCGTGCAAGAACTACGACGGGGATGTGC
AGTCCGACATCGTCGCGCAGGGTTACGGGTCGCTCGGCCTCATGACGAGC
GTGCTCTTGGCCCCGGACGGGAAGACGGTGGAGGTGGGTTCGTTTGGGCG
TGCAAGAACTACGACGGGGATGTGCAGTCCGACATCGTCGCGCAGGGTTA
CGGGTCGCTCGGCCTCATGACGAGCGTGCTCTTGGCCCCGGACGGGAAGA
CGGTGGAGTCCGAGGCAGCGCACGGGACGGTGACGAGGCACTGGCGCGAG
TATCAGAAGGGTAACAAGACATCGACCAACCCTGTTGCTTCCATCTTTGC
GTGGACGCGCGGCCTGGCCCACCGGGCGAAGCTGGACGATAACAAGCCTC
TCCGGTCCGAGGCAGCGCACGGGACGGTGACGAGGCACTGGCGCGAGTAT
CAGAAGGGTAACAAGACATCGACCAACCCTGTTGCTTCCATCTTTGCGTG
GACGCGCGGCCTGGCCCACCGGGCGAAGCTGGACGATAACAAGCCTCTCC
GGATTTTCTCGCAGAACCTCGAGAAGGCGGTGATCGAGACAATAGAAGCG
GGACACATGACGAAGGACCTGGCCATCTGTGTTCACGGCTGGAACGTGAC
CCAGGACCAATACCTCATGACAGAGCCCTTCATGGACGAGATCAAGGTCA
GTCGCGTGACGTCTCATGTGTGAATTTTCTCGCAGAACCTCGAGAAGGCG
GTGATCGAGACAATAGAAGCGGGACACATGACGAAGGACCTGGCCATCTG
TGTTCACGGCTGGAACGTGACCCAGGACCAATACCTCATGACAGAGCCCT
TCATGGACGAGATCAAGGTCAGTCGCGTGACGTCTCATGTGTGA
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