mRNA_H-elongata_contig143032.2971.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig143032.2971.1
Unique NamemRNA_H-elongata_contig143032.2971.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig143032.2971.1 vs. uniprot
Match: A0A5D6Y2V6_9STRA (Beta-mannosidase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2V6_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.170e-20
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    1 QIQQGLCLETAIKRWR------MGVAMGVLYWQLADAWQGPSWSTIEHDGSWKASHYFVKRAFAPTVIA 189
            QIQQGLC ++AI++WR      +G+ MG+LYWQL D WQG SWS+IE  G WK+ HYFVKR FAP +++
Sbjct:  643 QIQQGLCYQSAIRKWRRGKHAALGMTMGILYWQLNDIWQGTSWSSIEFSGRWKSLHYFVKREFAPFMLS 711
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BLAST of mRNA_H-elongata_contig143032.2971.1 vs. uniprot
Match: A0A0A7CLY4_9STRA (Beta-mannosidase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A0A7CLY4_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.030e-19
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 QIQQGLCLETAIKRWRMGVAMGVLYWQLADAWQGPSWSTIEHDGSWKASHYFVKRAFAPTV 183
            QIQQGLC  TAI+ WR     GVLYWQL D W+GPSWS+IE +G WKA H  VKR FAPT+
Sbjct:  627 QIQQGLCYNTAIETWRRQGVQGVLYWQLNDIWEGPSWSSIEFNGKWKALHSMVKRTFAPTL 687
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BLAST of mRNA_H-elongata_contig143032.2971.1 vs. uniprot
Match: A0A662XUA2_9STRA (Beta-mannosidase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XUA2_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 6.690e-19
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    1 QIQQGLCLETAIKRWR------MGVAMGVLYWQLADAWQGPSWSTIEHDGSWKASHYFVKRAFAPTVIA 189
            QIQQ LC +TAI+ WR      +G+ MG+LYWQL D WQG SWS++E+ G WK+ HY  KR FAP +++
Sbjct:  693 QIQQSLCYQTAIRTWRRGKNAKLGMTMGILYWQLNDIWQGSSWSSVEYSGRWKSLHYVAKREFAPLILS 761
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BLAST of mRNA_H-elongata_contig143032.2971.1 vs. uniprot
Match: A0A7S3C656_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3C656_9EUKA)

HSP 1 Score: 82.0 bits (201), Expect = 2.020e-18
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    1 QIQQGLCLETAIKRWRM-----GVAMGVLYWQLADAWQGPSWSTIEHDGSWKASHYFVKRAFAPTVIA 189
            Q+QQ  C ETA   WR         MG+LYWQL D WQGPSWS+IE+DGS K +HY VKR +AP +++
Sbjct:    2 QLQQARCYETAFSTWRRLRSSPAGTMGILYWQLNDVWQGPSWSSIEYDGSAKLTHYAVKRVYAPLLLS 69
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BLAST of mRNA_H-elongata_contig143032.2971.1 vs. uniprot
Match: A0A024GR73_9STRA (Beta-mannosidase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GR73_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 3.180e-18
Identity = 40/69 (57.97%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:    1 QIQQGLCLETAIKRWRMGV------AMGVLYWQLADAWQGPSWSTIEHDGSWKASHYFVKRAFAPTVIA 189
            QIQQ LC ETAI RWR G        MG+LYWQL D W G SWS++EH G WK+  Y +KRA+AP VI+
Sbjct:  642 QIQQALCYETAIHRWRRGKPIHAGHTMGILYWQLDDIWTGISWSSMEHSGRWKSLQYAIKRAYAPIVIS 710
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BLAST of mRNA_H-elongata_contig143032.2971.1 vs. uniprot
Match: F0WW34_9STRA (Beta-mannosidase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WW34_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 4.340e-18
Identity = 39/69 (56.52%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:    1 QIQQGLCLETAIKRWRMG------VAMGVLYWQLADAWQGPSWSTIEHDGSWKASHYFVKRAFAPTVIA 189
            QIQQ LC ETAI +WR G        MG+LYWQL D W G SWS++EH G WK+  Y +KRA+AP VI+
Sbjct:  714 QIQQALCYETAIHKWRRGKRIYAGYTMGILYWQLNDVWTGISWSSMEHSGRWKSLQYAIKRAYAPIVIS 782
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BLAST of mRNA_H-elongata_contig143032.2971.1 vs. uniprot
Match: A0A0D2WQW2_CAPO3 (Beta-mannosidase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WQW2_CAPO3)

HSP 1 Score: 83.6 bits (205), Expect = 2.820e-17
Identity = 39/68 (57.35%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:    1 QIQQGLCLETAIKRWRM-----GVAMGVLYWQLADAWQGPSWSTIEHDGSWKASHYFVKRAFAPTVIA 189
            QIQQ LC ETAI  WR         MGVLYWQL D WQGP+WS+IE  G WK  HY  KR FAP +++
Sbjct:  741 QIQQSLCYETAISNWRRLKGEDAHTMGVLYWQLNDIWQGPTWSSIEWSGRWKMLHYHAKRFFAPFMVS 808
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BLAST of mRNA_H-elongata_contig143032.2971.1 vs. uniprot
Match: A0A6G0W6Z9_9STRA (Glyco_hydro_2 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6Z9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 9.780e-17
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 QIQQGLCLETAIKRWRMGVAMGVLYWQLADAWQGPSWSTIEHDGSWKASHYFVKRAFAP 177
            Q+ Q +C + AI  WR    MG+LYWQL D WQGPSWS+IE++G WK  H   KRAFAP
Sbjct:  632 QLTQAVCYDAAISTWRRWGTMGILYWQLNDVWQGPSWSSIEYNGRWKPLHAIAKRAFAP 690
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BLAST of mRNA_H-elongata_contig143032.2971.1 vs. uniprot
Match: A0A485L5V3_9STRA (Aste57867_16031 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L5V3_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.340e-16
Identity = 34/59 (57.63%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:    1 QIQQGLCLETAIKRWRMGVAMGVLYWQLADAWQGPSWSTIEHDGSWKASHYFVKRAFAP 177
            Q+QQ  C + AI  WR    MG+LYWQL D W+GPSWS+IE+ G WK  H   KRAFAP
Sbjct:  673 QLQQAACYDVAITAWRRAGTMGILYWQLNDVWEGPSWSSIEYGGRWKPLHAVAKRAFAP 731
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BLAST of mRNA_H-elongata_contig143032.2971.1 vs. uniprot
Match: A0A1V9ZFE4_9STRA (Beta-mannosidase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZFE4_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.500e-16
Identity = 37/59 (62.71%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:    1 QIQQGLCLETAIKRWRMGVAMGVLYWQLADAWQGPSWSTIEHDGSWKASHYFVKRAFAP 177
            Q+QQGLC  TAI  WR     GVLYWQL D W GPSWS+IE DG WKA H  V   FAP
Sbjct:  641 QVQQGLCYATAIGTWRRQGVRGVLYWQLNDVWVGPSWSSIEADGRWKALHAMVAAPFAP 699
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143032.2971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5D6Y2V6_9STRA2.170e-2057.97Beta-mannosidase n=1 Tax=Pythium brassicum TaxID=1... [more]
A0A0A7CLY4_9STRA1.030e-1965.57Beta-mannosidase n=1 Tax=Thraustotheca clavata Tax... [more]
A0A662XUA2_9STRA6.690e-1953.62Beta-mannosidase n=2 Tax=Nothophytophthora sp. Chi... [more]
A0A7S3C656_9EUKA2.020e-1854.41Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A024GR73_9STRA3.180e-1857.97Beta-mannosidase n=1 Tax=Albugo candida TaxID=6535... [more]
F0WW34_9STRA4.340e-1856.52Beta-mannosidase n=1 Tax=Albugo laibachii Nc14 Tax... [more]
A0A0D2WQW2_CAPO32.820e-1757.35Beta-mannosidase n=1 Tax=Capsaspora owczarzaki (st... [more]
A0A6G0W6Z9_9STRA9.780e-1757.63Glyco_hydro_2 domain-containing protein n=1 Tax=Ap... [more]
A0A485L5V3_9STRA1.340e-1657.63Aste57867_16031 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9ZFE4_9STRA2.500e-1662.71Beta-mannosidase n=1 Tax=Achlya hypogyna TaxID=120... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143032contigH-elongata_contig143032:126..738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue1.6e-17
Seed eggNOG ortholog36331.EPrPI00000014559
Preferred nameMANBA
KEGG koko:K01192
KEGG Pathwayko00511,ko04142,map00511,map04142
GOsGO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004553,GO:0004567,GO:0005488,GO:0005537,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005773,GO:0005774,GO:0005775,GO:0005886,GO:0005975,GO:0006464,GO:0006516,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009311,GO:0009313,GO:0009987,GO:0012505,GO:0012506,GO:0015923,GO:0016020,GO:0016052,GO:0016192,GO:0016787,GO:0016798,GO:0019538,GO:0030141,GO:0030163,GO:0030246,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031974,GO:0031982,GO:0032940,GO:0035577,GO:0036094,GO:0036211,GO:0036230,GO:0042119,GO:0042582,GO:0043170,GO:0043202,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044267,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048029,GO:0050896,GO:0051179,GO:0051234,GO:0070013,GO:0071704,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0098852,GO:0099503,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.Beta-mannosidase. Source PGD
EggNOG OGs1MCYK@121069,COG3250@1,KOG2230@2759
EC3.2.1.25
COG Functional cat.G
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929848.6380472-CDS-H-elongata_contig143032:125..2661622929848.6380472-CDS-H-elongata_contig143032:125..266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143032 126..266 +
1691679182.0692651-CDS-H-elongata_contig143032:125..2661691679182.0692651-CDS-H-elongata_contig143032:125..266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143032 126..266 +
1622929848.6538625-CDS-H-elongata_contig143032:690..7381622929848.6538625-CDS-H-elongata_contig143032:690..738Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143032 691..738 +
1691679182.0819623-CDS-H-elongata_contig143032:690..7381691679182.0819623-CDS-H-elongata_contig143032:690..738Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143032 691..738 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143032.2971.1prot_H-elongata_contig143032.2971.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig143032 126..738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig143032.2971.1

>prot_H-elongata_contig143032.2971.1 ID=prot_H-elongata_contig143032.2971.1|Name=mRNA_H-elongata_contig143032.2971.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
QIQQGLCLETAIKRWRMGVAMGVLYWQLADAWQGPSWSTIEHDGSWKASH
YFVKRAFAPTVIA
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mRNA from alignment at H-elongata_contig143032:126..738+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig143032.2971.1 ID=mRNA_H-elongata_contig143032.2971.1|Name=mRNA_H-elongata_contig143032.2971.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=613bp|location=Sequence derived from alignment at H-elongata_contig143032:126..738+ (Himanthalia elongata Himel1 dioecious)
CAGATCCAGCAAGGCCTCTGCTTGGAGACCGCGATAAAGAGGTGGAGGAT
GGGCGTGGCCATGGGCGTGCTGTATTGGCAGCTAGCGGACGCCTGGCAGG
GGCCGAGCTGGAGCACTATCGAGCACGACGGCTCTTGGAAGGTGCCCGAT
GGTCCGGTTCCTTTTCCCCTCGCGCTTTTCTCCTCTCGGTTTTTGGATCG
GTCCGAAGATCGGTTCTCGGGATGCGTATATTGAGAAGCGGTTTGATGGC
TGTAGTGACAGCTGACAGACGCCGAAAAGGGCCAATCTAGATTACTATCG
AGCACGACGGCGCTTGGGGGGTATCACACCGGAACGAAACGGTGTCGTTT
GCGTTTCTTGGGTCGGTCCTCGGATCAGTTCTCATCCTTGTGAAACGTAG
CCTGGCCTATGAAAACCCGGTATCATCTATCGCTCCCTTCTGGCATTGTT
GAGATGCGTGGTGGTCTATACCCGTGAGGATACCACATACGTTTAACAAA
AGTACACCTCCCACCCCTTCACCTAACGATCGATCGATCGATTGATACAT
TTTTTGCCTCTTCAGGCTTCCCACTACTTCGTGAAGCGCGCGTTCGCTCC
TACAGTGATAGCG
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Coding sequence (CDS) from alignment at H-elongata_contig143032:126..738+

>mRNA_H-elongata_contig143032.2971.1 ID=mRNA_H-elongata_contig143032.2971.1|Name=mRNA_H-elongata_contig143032.2971.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig143032:126..738+ (Himanthalia elongata Himel1 dioecious)
CAGATCCAGCAAGGCCTCTGCTTGGAGACCGCGATAAAGAGGTGGAGGAT
GGGCGTGGCCATGGGCGTGCTGTATTGGCAGCTAGCGGACGCCTGGCAGG
GGCCGAGCTGGAGCACTATCGAGCACGACGGCTCTTGGAAGCAGATCCAG
CAAGGCCTCTGCTTGGAGACCGCGATAAAGAGGTGGAGGATGGGCGTGGC
CATGGGCGTGCTGTATTGGCAGCTAGCGGACGCCTGGCAGGGGCCGAGCT
GGAGCACTATCGAGCACGACGGCTCTTGGAAGGCTTCCCACTACTTCGTG
AAGCGCGCGTTCGCTCCTACAGTGATAGCGGCTTCCCACTACTTCGTGAA
GCGCGCGTTCGCTCCTACAGTGATAGCG
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